data_8Y4W # _model_server_result.job_id 6j1W1ZpTU30EBp2gLCI0zQ _model_server_result.datetime_utc '2025-03-22 05:32:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":705}' # _entry.id 8Y4W # _exptl.entry_id 8Y4W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Y4W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 50 B CYS 50 1_555 B SG CYS 53 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O SER 342 A SER 295 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 A O SER 345 A SER 298 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc3 A OE1 GLU 359 A GLU 312 1_555 E NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc4 A O THR 377 A THR 330 1_555 E NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc5 A O GLY 384 A GLY 337 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 A O VAL 387 A VAL 340 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 A O PRO 389 A PRO 342 1_555 C NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc8 A O GLY 564 A GLY 517 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc9 A O MET 565 A MET 518 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc10 A O GLY 605 A GLY 558 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc11 A O THR 608 A THR 561 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.851 ? metalc ? metalc12 A OG1 THR 608 A THR 561 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc13 A O MET 611 A MET 564 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 275 n n C1 C6 PTY sing 276 n n C1 HC11 PTY sing 277 n n C1 HC12 PTY sing 278 n n C2 C3 PTY sing 279 n n C2 N1 PTY sing 280 n n C2 HC21 PTY sing 281 n n C2 HC22 PTY sing 282 n n C3 O11 PTY sing 283 n n C3 HC31 PTY sing 284 n n C3 HC32 PTY sing 285 n n O4 C30 PTY sing 286 n n C5 C6 PTY sing 287 n n C5 O14 PTY sing 288 n n C5 HC51 PTY sing 289 n n C5 HC52 PTY sing 290 n n C6 O7 PTY sing 291 n n C6 HC6 PTY sing 292 n n O7 C8 PTY sing 293 n n C8 O10 PTY doub 294 n n C8 C11 PTY sing 295 n n C11 C12 PTY sing 296 n n C11 H111 PTY sing 297 n n C11 H112 PTY sing 298 n n C12 C13 PTY sing 299 n n C12 H121 PTY sing 300 n n C12 H122 PTY sing 301 n n C13 C14 PTY sing 302 n n C13 H131 PTY sing 303 n n C13 H132 PTY sing 304 n n C14 C15 PTY sing 305 n n C14 H141 PTY sing 306 n n C14 H142 PTY sing 307 n n C15 C16 PTY sing 308 n n C15 H151 PTY sing 309 n n C15 H152 PTY sing 310 n n C16 C17 PTY sing 311 n n C16 H161 PTY sing 312 n n C16 H162 PTY sing 313 n n C17 C18 PTY sing 314 n n C17 H171 PTY sing 315 n n C17 H172 PTY sing 316 n n C18 C19 PTY sing 317 n n C18 H181 PTY sing 318 n n C18 H182 PTY sing 319 n n C19 C20 PTY sing 320 n n C19 H191 PTY sing 321 n n C19 H192 PTY sing 322 n n C20 C21 PTY sing 323 n n C20 H201 PTY sing 324 n n C20 H202 PTY sing 325 n n C21 C22 PTY sing 326 n n C21 H211 PTY sing 327 n n C21 H212 PTY sing 328 n n C22 C23 PTY sing 329 n n C22 H221 PTY sing 330 n n C22 H222 PTY sing 331 n n C23 C24 PTY sing 332 n n C23 H231 PTY sing 333 n n C23 H232 PTY sing 334 n n C24 C25 PTY sing 335 n n C24 H241 PTY sing 336 n n C24 H242 PTY sing 337 n n C25 C26 PTY sing 338 n n C25 H251 PTY sing 339 n n C25 H252 PTY sing 340 n n C26 C27 PTY sing 341 n n C26 H261 PTY sing 342 n n C26 H262 PTY sing 343 n n C27 C28 PTY sing 344 n n C27 H271 PTY sing 345 n n C27 H272 PTY sing 346 n n C28 C29 PTY sing 347 n n C28 H281 PTY sing 348 n n C28 H282 PTY sing 349 n n C29 H291 PTY sing 350 n n C29 H292 PTY sing 351 n n C29 H293 PTY sing 352 n n C30 C31 PTY sing 353 n n C30 O30 PTY doub 354 n n C31 C32 PTY sing 355 n n C31 H311 PTY sing 356 n n C31 H312 PTY sing 357 n n C32 C33 PTY sing 358 n n C32 H321 PTY sing 359 n n C32 H322 PTY sing 360 n n C33 C34 PTY sing 361 n n C33 H331 PTY sing 362 n n C33 H332 PTY sing 363 n n C34 C35 PTY sing 364 n n C34 H341 PTY sing 365 n n C34 H342 PTY sing 366 n n C35 C36 PTY sing 367 n n C35 H351 PTY sing 368 n n C35 H352 PTY sing 369 n n C36 C37 PTY sing 370 n n C36 H361 PTY sing 371 n n C36 H362 PTY sing 372 n n C37 C38 PTY sing 373 n n C37 H371 PTY sing 374 n n C37 H372 PTY sing 375 n n C38 C39 PTY sing 376 n n C38 H381 PTY sing 377 n n C38 H382 PTY sing 378 n n C39 C40 PTY sing 379 n n C39 H391 PTY sing 380 n n C39 H392 PTY sing 381 n n C40 C41 PTY sing 382 n n C40 H401 PTY sing 383 n n C40 H402 PTY sing 384 n n C41 C42 PTY sing 385 n n C41 H411 PTY sing 386 n n C41 H412 PTY sing 387 n n C42 C43 PTY sing 388 n n C42 H421 PTY sing 389 n n C42 H422 PTY sing 390 n n C43 C44 PTY sing 391 n n C43 H431 PTY sing 392 n n C43 H432 PTY sing 393 n n C44 H441 PTY sing 394 n n C44 H442 PTY sing 395 n n C44 H443 PTY sing 396 n n P1 O11 PTY sing 397 n n P1 O12 PTY sing 398 n n P1 O13 PTY doub 399 n n P1 O14 PTY sing 400 n n O12 H12O PTY sing 401 n n N1 HN11 PTY sing 402 n n N1 HN12 PTY sing 403 n n # _atom_sites.entry_id 8Y4W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 701 1 NA NA . D 3 NA A 1 702 2 NA NA . E 3 NA A 1 703 3 NA NA . F 4 PTY A 1 704 1 PTY PTY . G 4 PTY A 1 705 2 PTY PTY . H 5 SLB A 1 706 1 SLB SLB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . G 4 218.809 202.88 206.769 1 74.23 ? C1 PTY 705 A 1 HETATM 2 C C2 PTY . . . G 4 223.048 201.837 200.709 1 84.52 ? C2 PTY 705 A 1 HETATM 3 C C3 PTY . . . G 4 223.232 202.593 202.004 1 93.21 ? C3 PTY 705 A 1 HETATM 4 O O4 PTY . . . G 4 217.685 203.301 207.541 1 70.79 ? O4 PTY 705 A 1 HETATM 5 C C5 PTY . . . G 4 219.921 204.444 205.151 1 73.51 ? C5 PTY 705 A 1 HETATM 6 C C6 PTY . . . G 4 219.732 204.069 206.608 1 71.62 ? C6 PTY 705 A 1 HETATM 7 O O7 PTY . . . G 4 220.971 203.712 207.232 1 73.4 ? O7 PTY 705 A 1 HETATM 8 C C8 PTY . . . G 4 221.885 204.64 207.514 1 69.17 ? C8 PTY 705 A 1 HETATM 9 O O10 PTY . . . G 4 223.054 204.509 207.261 1 72.94 ? O10 PTY 705 A 1 HETATM 10 C C11 PTY . . . G 4 221.283 205.844 208.18 1 61.79 ? C11 PTY 705 A 1 HETATM 11 C C12 PTY . . . G 4 221.811 206.078 209.583 1 64.48 ? C12 PTY 705 A 1 HETATM 12 C C13 PTY . . . G 4 222.877 207.162 209.63 1 55.39 ? C13 PTY 705 A 1 HETATM 13 C C14 PTY . . . G 4 223.65 207.122 210.939 1 58.52 ? C14 PTY 705 A 1 HETATM 14 C C15 PTY . . . G 4 224.333 205.786 211.195 1 61.75 ? C15 PTY 705 A 1 HETATM 15 C C16 PTY . . . G 4 224.851 205.656 212.621 1 66.66 ? C16 PTY 705 A 1 HETATM 16 C C17 PTY . . . G 4 225.504 204.316 212.922 1 74.04 ? C17 PTY 705 A 1 HETATM 17 C C18 PTY . . . G 4 226.853 204.473 213.611 1 73.15 ? C18 PTY 705 A 1 HETATM 18 C C19 PTY . . . G 4 227.913 205.141 212.747 1 71.9 ? C19 PTY 705 A 1 HETATM 19 C C20 PTY . . . G 4 229.255 205.274 213.456 1 74.71 ? C20 PTY 705 A 1 HETATM 20 C C21 PTY . . . G 4 229.338 206.462 214.405 1 72.79 ? C21 PTY 705 A 1 HETATM 21 C C22 PTY . . . G 4 229.294 206.061 215.874 1 65.23 ? C22 PTY 705 A 1 HETATM 22 C C23 PTY . . . G 4 228.503 207.034 216.736 1 57.23 ? C23 PTY 705 A 1 HETATM 23 C C24 PTY . . . G 4 227.141 207.364 216.14 1 58.23 ? C24 PTY 705 A 1 HETATM 24 C C25 PTY . . . G 4 226.205 208.061 217.114 1 50.48 ? C25 PTY 705 A 1 HETATM 25 C C26 PTY . . . G 4 226.813 209.315 217.727 1 48.26 ? C26 PTY 705 A 1 HETATM 26 C C27 PTY . . . G 4 227.031 210.443 216.728 1 54.86 ? C27 PTY 705 A 1 HETATM 27 C C28 PTY . . . G 4 228.072 211.458 217.185 1 50.4 ? C28 PTY 705 A 1 HETATM 28 C C29 PTY . . . G 4 227.946 211.797 218.662 1 45.87 ? C29 PTY 705 A 1 HETATM 29 C C30 PTY . . . G 4 217.368 202.592 208.622 1 72.4 ? C30 PTY 705 A 1 HETATM 30 C C31 PTY . . . G 4 218.263 202.918 209.785 1 66.52 ? C31 PTY 705 A 1 HETATM 31 O O30 PTY . . . G 4 216.469 201.791 208.639 1 69.11 ? O30 PTY 705 A 1 HETATM 32 C C32 PTY . . . G 4 218.082 204.331 210.312 1 60.71 ? C32 PTY 705 A 1 HETATM 33 C C33 PTY . . . G 4 218.976 204.623 211.51 1 58.4 ? C33 PTY 705 A 1 HETATM 34 C C34 PTY . . . G 4 218.982 206.101 211.874 1 65.64 ? C34 PTY 705 A 1 HETATM 35 C C35 PTY . . . G 4 220 206.468 212.946 1 63.32 ? C35 PTY 705 A 1 HETATM 36 C C36 PTY . . . G 4 220.445 207.923 212.865 1 59.24 ? C36 PTY 705 A 1 HETATM 37 C C37 PTY . . . G 4 221.483 208.308 213.909 1 55.88 ? C37 PTY 705 A 1 HETATM 38 C C38 PTY . . . G 4 222.235 209.585 213.557 1 52.1 ? C38 PTY 705 A 1 HETATM 39 C C39 PTY . . . G 4 223.224 210.023 214.63 1 51.12 ? C39 PTY 705 A 1 HETATM 40 C C40 PTY . . . G 4 222.595 210.894 215.711 1 53.02 ? C40 PTY 705 A 1 HETATM 41 C C41 PTY . . . G 4 223.311 210.807 217.052 1 52.66 ? C41 PTY 705 A 1 HETATM 42 C C42 PTY . . . G 4 223.011 209.521 217.814 1 54.64 ? C42 PTY 705 A 1 HETATM 43 C C43 PTY . . . G 4 221.54 209.34 218.171 1 55.31 ? C43 PTY 705 A 1 HETATM 44 C C44 PTY . . . G 4 221.186 207.894 218.494 1 48.59 ? C44 PTY 705 A 1 HETATM 45 P P1 PTY . . . G 4 221.836 204.319 203.403 1 88.78 ? P1 PTY 705 A 1 HETATM 46 O O11 PTY . . . G 4 221.958 202.942 202.525 1 92.12 ? O11 PTY 705 A 1 HETATM 47 O O12 PTY . . . G 4 223.154 204.682 204.01 1 72.95 ? O12 PTY 705 A 1 HETATM 48 O O13 PTY . . . G 4 221.056 205.362 202.669 1 72.22 ? O13 PTY 705 A 1 HETATM 49 O O14 PTY . . . G 4 220.872 203.612 204.533 1 84.44 ? O14 PTY 705 A 1 HETATM 50 N N1 PTY . . . G 4 222.957 202.743 199.577 1 76.55 ? N1 PTY 705 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 50 #