data_8Y59 # _model_server_result.job_id IcV05K_p-aElWqPrlcNPAg _model_server_result.datetime_utc '2025-02-18 23:50:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 8Y59 # _exptl.entry_id 8Y59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.472 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (1~{S})-1-[10-[3-(dimethylamino)propyl]phenothiazin-2-yl]ethanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Y59 _cell.length_a 100.908 _cell.length_b 100.908 _cell.length_c 49.955 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 N2 O S' _chem_comp.formula_weight 328.472 _chem_comp.id A1D5Y _chem_comp.mon_nstd_flag . _chem_comp.name (1~{S})-1-[10-[3-(dimethylamino)propyl]phenothiazin-2-yl]ethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C08 A1D5Y doub 1 n y C09 C11 A1D5Y sing 2 n y C08 C10 A1D5Y sing 3 n y C11 C20 A1D5Y doub 4 n y C10 C18 A1D5Y doub 5 n y C18 C20 A1D5Y sing 6 n y C18 S01 A1D5Y sing 7 n n C20 N03 A1D5Y sing 8 n n C05 N04 A1D5Y sing 9 n n N03 C15 A1D5Y sing 10 n n N03 C21 A1D5Y sing 11 n n C15 C17 A1D5Y sing 12 n n S01 C19 A1D5Y sing 13 n n C17 C16 A1D5Y sing 14 n n C16 N04 A1D5Y sing 15 n n N04 C06 A1D5Y sing 16 n n C21 C19 A1D5Y doub 17 n y C21 C14 A1D5Y sing 18 n y C19 C12 A1D5Y sing 19 n y C14 C22 A1D5Y doub 20 n y C12 C13 A1D5Y doub 21 n y C22 C13 A1D5Y sing 22 n y C22 C23 A1D5Y sing 23 n n O02 C23 A1D5Y sing 24 n n C23 C07 A1D5Y sing 25 n n C05 H052 A1D5Y sing 26 n n C05 H051 A1D5Y sing 27 n n C05 H053 A1D5Y sing 28 n n C06 H062 A1D5Y sing 29 n n C06 H061 A1D5Y sing 30 n n C06 H063 A1D5Y sing 31 n n C07 H071 A1D5Y sing 32 n n C07 H073 A1D5Y sing 33 n n C07 H072 A1D5Y sing 34 n n C08 H081 A1D5Y sing 35 n n C09 H091 A1D5Y sing 36 n n C10 H101 A1D5Y sing 37 n n C11 H111 A1D5Y sing 38 n n C12 H121 A1D5Y sing 39 n n C13 H131 A1D5Y sing 40 n n C14 H141 A1D5Y sing 41 n n C15 H151 A1D5Y sing 42 n n C15 H152 A1D5Y sing 43 n n C16 H161 A1D5Y sing 44 n n C16 H162 A1D5Y sing 45 n n C17 H171 A1D5Y sing 46 n n C17 H172 A1D5Y sing 47 n n C23 H231 A1D5Y sing 48 n n O02 H021 A1D5Y sing 49 n n # _atom_sites.entry_id 8Y59 _atom_sites.fract_transf_matrix[1][1] 0.00991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020018 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1D5Y A 1 300 300 A1D5Y CMA . C 3 HOH A 1 401 134 HOH HOH . C 3 HOH A 2 402 96 HOH HOH . C 3 HOH A 3 403 119 HOH HOH . C 3 HOH A 4 404 32 HOH HOH . C 3 HOH A 5 405 124 HOH HOH . C 3 HOH A 6 406 30 HOH HOH . C 3 HOH A 7 407 57 HOH HOH . C 3 HOH A 8 408 20 HOH HOH . C 3 HOH A 9 409 118 HOH HOH . C 3 HOH A 10 410 28 HOH HOH . C 3 HOH A 11 411 7 HOH HOH . C 3 HOH A 12 412 25 HOH HOH . C 3 HOH A 13 413 3 HOH HOH . C 3 HOH A 14 414 56 HOH HOH . C 3 HOH A 15 415 9 HOH HOH . C 3 HOH A 16 416 37 HOH HOH . C 3 HOH A 17 417 6 HOH HOH . C 3 HOH A 18 418 88 HOH HOH . C 3 HOH A 19 419 97 HOH HOH . C 3 HOH A 20 420 39 HOH HOH . C 3 HOH A 21 421 49 HOH HOH . C 3 HOH A 22 422 83 HOH HOH . C 3 HOH A 23 423 63 HOH HOH . C 3 HOH A 24 424 44 HOH HOH . C 3 HOH A 25 425 4 HOH HOH . C 3 HOH A 26 426 13 HOH HOH . C 3 HOH A 27 427 14 HOH HOH . C 3 HOH A 28 428 2 HOH HOH . C 3 HOH A 29 429 82 HOH HOH . C 3 HOH A 30 430 40 HOH HOH . C 3 HOH A 31 431 65 HOH HOH . C 3 HOH A 32 432 21 HOH HOH . C 3 HOH A 33 433 67 HOH HOH . C 3 HOH A 34 434 64 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 147 HOH HOH . C 3 HOH A 37 437 45 HOH HOH . C 3 HOH A 38 438 104 HOH HOH . C 3 HOH A 39 439 54 HOH HOH . C 3 HOH A 40 440 53 HOH HOH . C 3 HOH A 41 441 52 HOH HOH . C 3 HOH A 42 442 103 HOH HOH . C 3 HOH A 43 443 74 HOH HOH . C 3 HOH A 44 444 50 HOH HOH . C 3 HOH A 45 445 72 HOH HOH . C 3 HOH A 46 446 42 HOH HOH . C 3 HOH A 47 447 140 HOH HOH . C 3 HOH A 48 448 48 HOH HOH . C 3 HOH A 49 449 58 HOH HOH . C 3 HOH A 50 450 26 HOH HOH . C 3 HOH A 51 451 12 HOH HOH . C 3 HOH A 52 452 66 HOH HOH . C 3 HOH A 53 453 31 HOH HOH . C 3 HOH A 54 454 24 HOH HOH . C 3 HOH A 55 455 89 HOH HOH . C 3 HOH A 56 456 99 HOH HOH . C 3 HOH A 57 457 87 HOH HOH . C 3 HOH A 58 458 55 HOH HOH . C 3 HOH A 59 459 70 HOH HOH . C 3 HOH A 60 460 11 HOH HOH . C 3 HOH A 61 461 27 HOH HOH . C 3 HOH A 62 462 22 HOH HOH . C 3 HOH A 63 463 75 HOH HOH . C 3 HOH A 64 464 73 HOH HOH . C 3 HOH A 65 465 60 HOH HOH . C 3 HOH A 66 466 76 HOH HOH . C 3 HOH A 67 467 141 HOH HOH . C 3 HOH A 68 468 8 HOH HOH . C 3 HOH A 69 469 115 HOH HOH . C 3 HOH A 70 470 138 HOH HOH . C 3 HOH A 71 471 33 HOH HOH . C 3 HOH A 72 472 110 HOH HOH . C 3 HOH A 73 473 91 HOH HOH . C 3 HOH A 74 474 98 HOH HOH . C 3 HOH A 75 475 81 HOH HOH . C 3 HOH A 76 476 17 HOH HOH . C 3 HOH A 77 477 71 HOH HOH . C 3 HOH A 78 478 116 HOH HOH . C 3 HOH A 79 479 18 HOH HOH . C 3 HOH A 80 480 38 HOH HOH . C 3 HOH A 81 481 139 HOH HOH . C 3 HOH A 82 482 127 HOH HOH . C 3 HOH A 83 483 94 HOH HOH . C 3 HOH A 84 484 46 HOH HOH . C 3 HOH A 85 485 51 HOH HOH . C 3 HOH A 86 486 10 HOH HOH . C 3 HOH A 87 487 136 HOH HOH . C 3 HOH A 88 488 62 HOH HOH . C 3 HOH A 89 489 34 HOH HOH . C 3 HOH A 90 490 132 HOH HOH . C 3 HOH A 91 491 84 HOH HOH . C 3 HOH A 92 492 16 HOH HOH . C 3 HOH A 93 493 130 HOH HOH . C 3 HOH A 94 494 92 HOH HOH . C 3 HOH A 95 495 112 HOH HOH . C 3 HOH A 96 496 68 HOH HOH . C 3 HOH A 97 497 41 HOH HOH . C 3 HOH A 98 498 126 HOH HOH . C 3 HOH A 99 499 36 HOH HOH . C 3 HOH A 100 500 123 HOH HOH . C 3 HOH A 101 501 15 HOH HOH . C 3 HOH A 102 502 19 HOH HOH . C 3 HOH A 103 503 61 HOH HOH . C 3 HOH A 104 504 43 HOH HOH . C 3 HOH A 105 505 108 HOH HOH . C 3 HOH A 106 506 93 HOH HOH . C 3 HOH A 107 507 105 HOH HOH . C 3 HOH A 108 508 146 HOH HOH . C 3 HOH A 109 509 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C05 A1D5Y . . . B 2 -24.989 24.96 7.307 1 60.56 ? C05 A1D5Y 300 A 1 HETATM 2 C C06 A1D5Y . . . B 2 -24.495 24.864 9.624 1 42.32 ? C06 A1D5Y 300 A 1 HETATM 3 C C07 A1D5Y . . . B 2 -21.614 24.458 12.416 1 48.29 ? C07 A1D5Y 300 A 1 HETATM 4 C C08 A1D5Y . . . B 2 -17.378 24.389 3.81 1 40.35 ? C08 A1D5Y 300 A 1 HETATM 5 C C09 A1D5Y . . . B 2 -18.606 25.049 3.801 1 41.96 ? C09 A1D5Y 300 A 1 HETATM 6 C C10 A1D5Y . . . B 2 -16.955 23.818 4.996 1 40.15 ? C10 A1D5Y 300 A 1 HETATM 7 C C11 A1D5Y . . . B 2 -19.381 25.132 4.951 1 42.38 ? C11 A1D5Y 300 A 1 HETATM 8 C C12 A1D5Y . . . B 2 -17.512 23.461 10.228 1 41.14 ? C12 A1D5Y 300 A 1 HETATM 9 C C13 A1D5Y . . . B 2 -18.179 23.879 11.379 1 40.94 ? C13 A1D5Y 300 A 1 HETATM 10 C C14 A1D5Y . . . B 2 -19.827 24.874 9.914 1 39.67 ? C14 A1D5Y 300 A 1 HETATM 11 C C15 A1D5Y . . . B 2 -20.744 25.71 7.406 1 54 ? C15 A1D5Y 300 A 1 HETATM 12 C C16 A1D5Y . . . B 2 -23.138 26.173 8.161 1 54.4 ? C16 A1D5Y 300 A 1 HETATM 13 C C17 A1D5Y . . . B 2 -22.116 25.114 7.66 1 45.54 ? C17 A1D5Y 300 A 1 HETATM 14 C C18 A1D5Y . . . B 2 -17.72 23.924 6.152 1 46.25 ? C18 A1D5Y 300 A 1 HETATM 15 C C19 A1D5Y . . . B 2 -17.989 23.737 8.947 1 50.02 ? C19 A1D5Y 300 A 1 HETATM 16 C C20 A1D5Y . . . B 2 -18.967 24.578 6.185 1 43.71 ? C20 A1D5Y 300 A 1 HETATM 17 C C21 A1D5Y . . . B 2 -19.175 24.461 8.717 1 42.06 ? C21 A1D5Y 300 A 1 HETATM 18 C C22 A1D5Y . . . B 2 -19.376 24.605 11.223 1 37.48 ? C22 A1D5Y 300 A 1 HETATM 19 C C23 A1D5Y . . . B 2 -20.211 25.129 12.394 1 37.65 ? C23 A1D5Y 300 A 1 HETATM 20 N N03 A1D5Y . . . B 2 -19.695 24.688 7.397 1 50.7 ? N03 A1D5Y 300 A 1 HETATM 21 N N04 A1D5Y . . . B 2 -24.464 25.661 8.433 1 64.38 ? N04 A1D5Y 300 A 1 HETATM 22 O O02 A1D5Y . . . B 2 -20.261 26.55 12.244 1 43.66 ? O02 A1D5Y 300 A 1 HETATM 23 S S01 A1D5Y . . . B 2 -17.068 23.121 7.587 1 64.29 ? S01 A1D5Y 300 A 1 HETATM 24 H H052 A1D5Y . . . B 2 -24.951 25.605 6.415 1 72.7 ? H052 A1D5Y 300 A 1 HETATM 25 H H051 A1D5Y . . . B 2 -26.034 24.673 7.5 1 72.7 ? H051 A1D5Y 300 A 1 HETATM 26 H H053 A1D5Y . . . B 2 -24.394 24.053 7.121 1 72.7 ? H053 A1D5Y 300 A 1 HETATM 27 H H062 A1D5Y . . . B 2 -25.533 24.585 9.864 1 50.81 ? H062 A1D5Y 300 A 1 HETATM 28 H H061 A1D5Y . . . B 2 -24.072 25.431 10.469 1 50.81 ? H061 A1D5Y 300 A 1 HETATM 29 H H063 A1D5Y . . . B 2 -23.903 23.946 9.479 1 50.81 ? H063 A1D5Y 300 A 1 HETATM 30 H H071 A1D5Y . . . B 2 -21.525 23.363 12.478 1 57.98 ? H071 A1D5Y 300 A 1 HETATM 31 H H073 A1D5Y . . . B 2 -22.181 24.701 11.505 1 57.98 ? H073 A1D5Y 300 A 1 HETATM 32 H H072 A1D5Y . . . B 2 -22.2 24.8 13.281 1 57.98 ? H072 A1D5Y 300 A 1 HETATM 33 H H081 A1D5Y . . . B 2 -16.762 24.322 2.909 1 48.45 ? H081 A1D5Y 300 A 1 HETATM 34 H H091 A1D5Y . . . B 2 -18.975 25.511 2.882 1 50.38 ? H091 A1D5Y 300 A 1 HETATM 35 H H101 A1D5Y . . . B 2 -16.01 23.273 5.041 1 48.21 ? H101 A1D5Y 300 A 1 HETATM 36 H H111 A1D5Y . . . B 2 -20.337 25.645 4.882 1 50.88 ? H111 A1D5Y 300 A 1 HETATM 37 H H121 A1D5Y . . . B 2 -16.58 22.897 10.32 1 49.39 ? H121 A1D5Y 300 A 1 HETATM 38 H H131 A1D5Y . . . B 2 -17.792 23.653 12.375 1 49.15 ? H131 A1D5Y 300 A 1 HETATM 39 H H141 A1D5Y . . . B 2 -20.751 25.445 9.834 1 47.62 ? H141 A1D5Y 300 A 1 HETATM 40 H H151 A1D5Y . . . B 2 -20.726 26.246 6.443 1 64.83 ? H151 A1D5Y 300 A 1 HETATM 41 H H152 A1D5Y . . . B 2 -20.5 26.463 8.172 1 64.83 ? H152 A1D5Y 300 A 1 HETATM 42 H H161 A1D5Y . . . B 2 -23.224 26.984 7.417 1 65.31 ? H161 A1D5Y 300 A 1 HETATM 43 H H162 A1D5Y . . . B 2 -22.754 26.651 9.079 1 65.31 ? H162 A1D5Y 300 A 1 HETATM 44 H H171 A1D5Y . . . B 2 -22.022 24.301 8.395 1 54.67 ? H171 A1D5Y 300 A 1 HETATM 45 H H172 A1D5Y . . . B 2 -22.48 24.646 6.734 1 54.67 ? H172 A1D5Y 300 A 1 HETATM 46 H H231 A1D5Y . . . B 2 -19.817 24.881 13.401 1 45.21 ? H231 A1D5Y 300 A 1 HETATM 47 H H021 A1D5Y . . . B 2 -21.095 26.752 11.797 1 52.41 ? H021 A1D5Y 300 A 1 HETATM 48 H H041 A1D5Y . . . B 2 -25.075 26.444 8.62 1 77.28 ? H041 A1D5Y 300 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #