data_8Y5B # _model_server_result.job_id VfuELkO4NQK-ivpjA5q4fg _model_server_result.datetime_utc '2024-11-27 11:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8Y5B # _exptl.entry_id 8Y5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 328.472 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{R})-1-[10-[3-(dimethylamino)propyl]phenothiazin-2-yl]ethanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Y5B _cell.length_a 100.889 _cell.length_b 100.889 _cell.length_c 48.194 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 N2 O S' _chem_comp.formula_weight 328.472 _chem_comp.id A1D5Z _chem_comp.mon_nstd_flag . _chem_comp.name (1~{R})-1-[10-[3-(dimethylamino)propyl]phenothiazin-2-yl]ethanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C08 A1D5Z doub 1 n y C09 C11 A1D5Z sing 2 n y C08 C10 A1D5Z sing 3 n y C11 C20 A1D5Z doub 4 n y C10 C18 A1D5Z doub 5 n y C20 C18 A1D5Z sing 6 n y C20 N03 A1D5Z sing 7 n n C18 S01 A1D5Z sing 8 n n C15 N03 A1D5Z sing 9 n n C15 C17 A1D5Z sing 10 n n C16 C17 A1D5Z sing 11 n n C16 N04 A1D5Z sing 12 n n N03 C21 A1D5Z sing 13 n n C06 N04 A1D5Z sing 14 n n N04 C05 A1D5Z sing 15 n n S01 C19 A1D5Z sing 16 n n C21 C19 A1D5Z doub 17 n y C21 C14 A1D5Z sing 18 n y C19 C12 A1D5Z sing 19 n y C14 C22 A1D5Z doub 20 n y C12 C13 A1D5Z doub 21 n y C22 C13 A1D5Z sing 22 n y C22 C23 A1D5Z sing 23 n n C23 C07 A1D5Z sing 24 n n C23 O02 A1D5Z sing 25 n n C10 H101 A1D5Z sing 26 n n C11 H111 A1D5Z sing 27 n n C13 H131 A1D5Z sing 28 n n C14 H141 A1D5Z sing 29 n n C17 H172 A1D5Z sing 30 n n C17 H171 A1D5Z sing 31 n n C23 H231 A1D5Z sing 32 n n C05 H051 A1D5Z sing 33 n n C05 H053 A1D5Z sing 34 n n C05 H052 A1D5Z sing 35 n n C06 H063 A1D5Z sing 36 n n C06 H062 A1D5Z sing 37 n n C06 H061 A1D5Z sing 38 n n C07 H072 A1D5Z sing 39 n n C07 H071 A1D5Z sing 40 n n C07 H073 A1D5Z sing 41 n n C08 H081 A1D5Z sing 42 n n C09 H091 A1D5Z sing 43 n n C12 H121 A1D5Z sing 44 n n C15 H151 A1D5Z sing 45 n n C15 H152 A1D5Z sing 46 n n C16 H162 A1D5Z sing 47 n n C16 H161 A1D5Z sing 48 n n O02 H021 A1D5Z sing 49 n n # _atom_sites.entry_id 8Y5B _atom_sites.fract_transf_matrix[1][1] 0.009912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1D5Z A 1 201 201 A1D5Z CMB . C 3 HOH A 1 301 130 HOH HOH . C 3 HOH A 2 302 144 HOH HOH . C 3 HOH A 3 303 155 HOH HOH . C 3 HOH A 4 304 71 HOH HOH . C 3 HOH A 5 305 142 HOH HOH . C 3 HOH A 6 306 44 HOH HOH . C 3 HOH A 7 307 148 HOH HOH . C 3 HOH A 8 308 82 HOH HOH . C 3 HOH A 9 309 50 HOH HOH . C 3 HOH A 10 310 109 HOH HOH . C 3 HOH A 11 311 162 HOH HOH . C 3 HOH A 12 312 52 HOH HOH . C 3 HOH A 13 313 32 HOH HOH . C 3 HOH A 14 314 77 HOH HOH . C 3 HOH A 15 315 118 HOH HOH . C 3 HOH A 16 316 26 HOH HOH . C 3 HOH A 17 317 127 HOH HOH . C 3 HOH A 18 318 37 HOH HOH . C 3 HOH A 19 319 59 HOH HOH . C 3 HOH A 20 320 42 HOH HOH . C 3 HOH A 21 321 53 HOH HOH . C 3 HOH A 22 322 18 HOH HOH . C 3 HOH A 23 323 4 HOH HOH . C 3 HOH A 24 324 48 HOH HOH . C 3 HOH A 25 325 125 HOH HOH . C 3 HOH A 26 326 15 HOH HOH . C 3 HOH A 27 327 62 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 21 HOH HOH . C 3 HOH A 30 330 6 HOH HOH . C 3 HOH A 31 331 73 HOH HOH . C 3 HOH A 32 332 5 HOH HOH . C 3 HOH A 33 333 164 HOH HOH . C 3 HOH A 34 334 12 HOH HOH . C 3 HOH A 35 335 14 HOH HOH . C 3 HOH A 36 336 99 HOH HOH . C 3 HOH A 37 337 30 HOH HOH . C 3 HOH A 38 338 74 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 61 HOH HOH . C 3 HOH A 41 341 107 HOH HOH . C 3 HOH A 42 342 115 HOH HOH . C 3 HOH A 43 343 86 HOH HOH . C 3 HOH A 44 344 156 HOH HOH . C 3 HOH A 45 345 108 HOH HOH . C 3 HOH A 46 346 89 HOH HOH . C 3 HOH A 47 347 85 HOH HOH . C 3 HOH A 48 348 60 HOH HOH . C 3 HOH A 49 349 90 HOH HOH . C 3 HOH A 50 350 17 HOH HOH . C 3 HOH A 51 351 23 HOH HOH . C 3 HOH A 52 352 159 HOH HOH . C 3 HOH A 53 353 25 HOH HOH . C 3 HOH A 54 354 1 HOH HOH . C 3 HOH A 55 355 150 HOH HOH . C 3 HOH A 56 356 49 HOH HOH . C 3 HOH A 57 357 132 HOH HOH . C 3 HOH A 58 358 31 HOH HOH . C 3 HOH A 59 359 10 HOH HOH . C 3 HOH A 60 360 79 HOH HOH . C 3 HOH A 61 361 51 HOH HOH . C 3 HOH A 62 362 34 HOH HOH . C 3 HOH A 63 363 19 HOH HOH . C 3 HOH A 64 364 8 HOH HOH . C 3 HOH A 65 365 43 HOH HOH . C 3 HOH A 66 366 76 HOH HOH . C 3 HOH A 67 367 123 HOH HOH . C 3 HOH A 68 368 95 HOH HOH . C 3 HOH A 69 369 163 HOH HOH . C 3 HOH A 70 370 63 HOH HOH . C 3 HOH A 71 371 152 HOH HOH . C 3 HOH A 72 372 46 HOH HOH . C 3 HOH A 73 373 83 HOH HOH . C 3 HOH A 74 374 110 HOH HOH . C 3 HOH A 75 375 122 HOH HOH . C 3 HOH A 76 376 54 HOH HOH . C 3 HOH A 77 377 24 HOH HOH . C 3 HOH A 78 378 96 HOH HOH . C 3 HOH A 79 379 36 HOH HOH . C 3 HOH A 80 380 100 HOH HOH . C 3 HOH A 81 381 160 HOH HOH . C 3 HOH A 82 382 141 HOH HOH . C 3 HOH A 83 383 139 HOH HOH . C 3 HOH A 84 384 3 HOH HOH . C 3 HOH A 85 385 93 HOH HOH . C 3 HOH A 86 386 33 HOH HOH . C 3 HOH A 87 387 128 HOH HOH . C 3 HOH A 88 388 78 HOH HOH . C 3 HOH A 89 389 40 HOH HOH . C 3 HOH A 90 390 2 HOH HOH . C 3 HOH A 91 391 55 HOH HOH . C 3 HOH A 92 392 153 HOH HOH . C 3 HOH A 93 393 84 HOH HOH . C 3 HOH A 94 394 88 HOH HOH . C 3 HOH A 95 395 16 HOH HOH . C 3 HOH A 96 396 147 HOH HOH . C 3 HOH A 97 397 151 HOH HOH . C 3 HOH A 98 398 91 HOH HOH . C 3 HOH A 99 399 98 HOH HOH . C 3 HOH A 100 400 166 HOH HOH . C 3 HOH A 101 401 87 HOH HOH . C 3 HOH A 102 402 35 HOH HOH . C 3 HOH A 103 403 47 HOH HOH . C 3 HOH A 104 404 64 HOH HOH . C 3 HOH A 105 405 165 HOH HOH . C 3 HOH A 106 406 106 HOH HOH . C 3 HOH A 107 407 45 HOH HOH . C 3 HOH A 108 408 27 HOH HOH . C 3 HOH A 109 409 22 HOH HOH . C 3 HOH A 110 410 57 HOH HOH . C 3 HOH A 111 411 116 HOH HOH . C 3 HOH A 112 412 92 HOH HOH . C 3 HOH A 113 413 69 HOH HOH . C 3 HOH A 114 414 29 HOH HOH . C 3 HOH A 115 415 80 HOH HOH . C 3 HOH A 116 416 131 HOH HOH . C 3 HOH A 117 417 117 HOH HOH . C 3 HOH A 118 418 119 HOH HOH . C 3 HOH A 119 419 67 HOH HOH . C 3 HOH A 120 420 126 HOH HOH . C 3 HOH A 121 421 7 HOH HOH . C 3 HOH A 122 422 158 HOH HOH . C 3 HOH A 123 423 161 HOH HOH . C 3 HOH A 124 424 70 HOH HOH . C 3 HOH A 125 425 135 HOH HOH . C 3 HOH A 126 426 140 HOH HOH . C 3 HOH A 127 427 143 HOH HOH . C 3 HOH A 128 428 94 HOH HOH . C 3 HOH A 129 429 124 HOH HOH . C 3 HOH A 130 430 41 HOH HOH . C 3 HOH A 131 431 105 HOH HOH . C 3 HOH A 132 432 134 HOH HOH . C 3 HOH A 133 433 9 HOH HOH . C 3 HOH A 134 434 38 HOH HOH . C 3 HOH A 135 435 113 HOH HOH . C 3 HOH A 136 436 11 HOH HOH . C 3 HOH A 137 437 120 HOH HOH . C 3 HOH A 138 438 56 HOH HOH . C 3 HOH A 139 439 75 HOH HOH . C 3 HOH A 140 440 149 HOH HOH . C 3 HOH A 141 441 72 HOH HOH . C 3 HOH A 142 442 20 HOH HOH . C 3 HOH A 143 443 97 HOH HOH . C 3 HOH A 144 444 154 HOH HOH . C 3 HOH A 145 445 136 HOH HOH . C 3 HOH A 146 446 114 HOH HOH . C 3 HOH A 147 447 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1D5Z . . . B 2 -16.901 23.635 4.674 1 27.14 ? C10 A1D5Z 201 A 1 HETATM 2 C C11 A1D5Z . . . B 2 -19.231 25.13 4.149 1 29.21 ? C11 A1D5Z 201 A 1 HETATM 3 C C13 A1D5Z . . . B 2 -18.732 24.956 10.509 1 35.28 ? C13 A1D5Z 201 A 1 HETATM 4 C C14 A1D5Z . . . B 2 -20.216 25.619 8.72 1 33.23 ? C14 A1D5Z 201 A 1 HETATM 5 C C17 A1D5Z . . . B 2 -22.441 24.008 6.806 1 37.1 ? C17 A1D5Z 201 A 1 HETATM 6 C C18 A1D5Z . . . B 2 -17.883 23.773 5.647 1 30.55 ? C18 A1D5Z 201 A 1 HETATM 7 C C21 A1D5Z . . . B 2 -19.565 24.77 7.799 1 32.61 ? C21 A1D5Z 201 A 1 HETATM 8 C C22 A1D5Z . . . B 2 -19.821 25.72 10.066 1 34.68 ? C22 A1D5Z 201 A 1 HETATM 9 C C23 A1D5Z . . . B 2 -20.605 26.664 11.009 1 40.82 ? C23 A1D5Z 201 A 1 HETATM 10 C C05 A1D5Z . . . B 2 -24.375 21.764 7.271 1 48.04 ? C05 A1D5Z 201 A 1 HETATM 11 C C06 A1D5Z . . . B 2 -22.705 20.053 6.535 1 44.73 ? C06 A1D5Z 201 A 1 HETATM 12 C C07 A1D5Z . . . B 2 -22.113 26.327 11.131 1 49.47 ? C07 A1D5Z 201 A 1 HETATM 13 C C08 A1D5Z . . . B 2 -17.079 24.256 3.446 1 27.83 ? C08 A1D5Z 201 A 1 HETATM 14 C C09 A1D5Z . . . B 2 -18.231 24.994 3.183 1 28.39 ? C09 A1D5Z 201 A 1 HETATM 15 C C12 A1D5Z . . . B 2 -18.037 24.118 9.622 1 31.51 ? C12 A1D5Z 201 A 1 HETATM 16 C C15 A1D5Z . . . B 2 -21.404 24.973 6.159 1 31.92 ? C15 A1D5Z 201 A 1 HETATM 17 C C16 A1D5Z . . . B 2 -22.252 22.573 6.258 1 37.24 ? C16 A1D5Z 201 A 1 HETATM 18 C C19 A1D5Z . . . B 2 -18.458 24.032 8.283 1 31.45 ? C19 A1D5Z 201 A 1 HETATM 19 C C20 A1D5Z . . . B 2 -19.061 24.519 5.415 1 31.08 ? C20 A1D5Z 201 A 1 HETATM 20 N N03 A1D5Z . . . B 2 -20.01 24.619 6.451 1 33.39 ? N03 A1D5Z 201 A 1 HETATM 21 N N04 A1D5Z . . . B 2 -22.904 21.451 7.072 1 42.81 ? N04 A1D5Z 201 A 1 HETATM 22 O O02 A1D5Z . . . B 2 -19.963 26.579 12.269 1 42.85 ? O02 A1D5Z 201 A 1 HETATM 23 S S01 A1D5Z . . . B 2 -17.631 22.934 7.179 1 31.35 ? S01 A1D5Z 201 A 1 HETATM 24 H H101 A1D5Z . . . B 2 -16.007 23.043 4.885 1 32.58 ? H101 A1D5Z 201 A 1 HETATM 25 H H111 A1D5Z . . . B 2 -20.121 25.706 3.904 1 35.07 ? H111 A1D5Z 201 A 1 HETATM 26 H H131 A1D5Z . . . B 2 -18.43 25.019 11.556 1 42.35 ? H131 A1D5Z 201 A 1 HETATM 27 H H141 A1D5Z . . . B 2 -21.062 26.234 8.406 1 39.88 ? H141 A1D5Z 201 A 1 HETATM 28 H H172 A1D5Z . . . B 2 -23.462 24.369 6.592 1 44.54 ? H172 A1D5Z 201 A 1 HETATM 29 H H171 A1D5Z . . . B 2 -22.32 24.02 7.902 1 44.54 ? H171 A1D5Z 201 A 1 HETATM 30 H H231 A1D5Z . . . B 2 -20.648 27.706 10.623 1 49 ? H231 A1D5Z 201 A 1 HETATM 31 H H051 A1D5Z . . . B 2 -24.477 22.695 7.841 1 57.66 ? H051 A1D5Z 201 A 1 HETATM 32 H H053 A1D5Z . . . B 2 -24.853 20.946 7.821 1 57.66 ? H053 A1D5Z 201 A 1 HETATM 33 H H052 A1D5Z . . . B 2 -24.861 21.88 6.295 1 57.66 ? H052 A1D5Z 201 A 1 HETATM 34 H H063 A1D5Z . . . B 2 -21.63 19.85 6.45 1 53.69 ? H063 A1D5Z 201 A 1 HETATM 35 H H062 A1D5Z . . . B 2 -23.177 19.977 5.546 1 53.69 ? H062 A1D5Z 201 A 1 HETATM 36 H H061 A1D5Z . . . B 2 -23.167 19.334 7.224 1 53.69 ? H061 A1D5Z 201 A 1 HETATM 37 H H072 A1D5Z . . . B 2 -22.263 25.258 11.355 1 59.38 ? H072 A1D5Z 201 A 1 HETATM 38 H H071 A1D5Z . . . B 2 -22.647 26.552 10.193 1 59.38 ? H071 A1D5Z 201 A 1 HETATM 39 H H073 A1D5Z . . . B 2 -22.586 26.91 11.937 1 59.38 ? H073 A1D5Z 201 A 1 HETATM 40 H H081 A1D5Z . . . B 2 -16.304 24.162 2.682 1 33.4 ? H081 A1D5Z 201 A 1 HETATM 41 H H091 A1D5Z . . . B 2 -18.365 25.477 2.213 1 34.08 ? H091 A1D5Z 201 A 1 HETATM 42 H H121 A1D5Z . . . B 2 -17.175 23.535 9.958 1 37.83 ? H121 A1D5Z 201 A 1 HETATM 43 H H151 A1D5Z . . . B 2 -21.545 24.989 5.067 1 38.31 ? H151 A1D5Z 201 A 1 HETATM 44 H H152 A1D5Z . . . B 2 -21.59 26.001 6.507 1 38.31 ? H152 A1D5Z 201 A 1 HETATM 45 H H162 A1D5Z . . . B 2 -21.186 22.301 6.205 1 44.69 ? H162 A1D5Z 201 A 1 HETATM 46 H H161 A1D5Z . . . B 2 -22.673 22.47 5.246 1 44.69 ? H161 A1D5Z 201 A 1 HETATM 47 H H021 A1D5Z . . . B 2 -20.342 25.802 12.724 1 51.43 ? H021 A1D5Z 201 A 1 HETATM 48 H H041 A1D5Z . . . B 2 -22.407 21.419 7.972 1 51.38 ? H041 A1D5Z 201 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #