data_8Y8Z
#
_model_server_result.job_id            NxTke8hpaBbhF9FYhivumA 
_model_server_result.datetime_utc      '2024-11-14 07:47:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8y8z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    8Y8Z 
#
_exptl.entry_id    8Y8Z 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              277.403 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-methyl-3-(1-tetracyclo[6.6.2.0^{2,7}.0^{9,14}]hexadeca-2(7),3,5,9,11,13-hexaenyl)propan-1-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Y8Z 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Y8Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 71 A GLY 71 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc2 A O VAL 74 A VAL 74 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc3 A OG SER 419 A SER 419 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? 
metalc ? metalc4 B O VAL 74 E VAL 74 1_555 G NA NA . E NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc5 B OD2 ASP 418 E ASP 418 1_555 G NA NA . E NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
#
_chem_comp.formula           'C20 H23 N' 
_chem_comp.formula_weight    277.403 
_chem_comp.id                A1LX3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-methyl-3-(1-tetracyclo[6.6.2.0^{2,7}.0^{9,14}]hexadeca-2(7),3,5,9,11,13-hexaenyl)propan-1-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Maprotiline 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C15 A1LX3 doub 1 n y 
C10 C09 A1LX3 sing 2 n n 
C10 C11 A1LX3 sing 3 n y 
C13 C12 A1LX3 sing 4 n y 
C13 C14 A1LX3 doub 5 n y 
C15 C06 A1LX3 sing 6 n n 
C15 C14 A1LX3 sing 7 n y 
C17 C16 A1LX3 doub 8 n y 
C17 C18 A1LX3 sing 9 n y 
C20 C21 A1LX3 doub 10 n y 
C20 C19 A1LX3 sing 11 n y 
C21 C06 A1LX3 sing 12 n n 
C21 C16 A1LX3 sing 13 n y 
C01 N02 A1LX3 sing 14 n n 
C03 C04 A1LX3 sing 15 n n 
C03 N02 A1LX3 sing 16 n n 
C04 C05 A1LX3 sing 17 n n 
C05 C06 A1LX3 sing 18 n n 
C06 C07 A1LX3 sing 19 n n 
C08 C09 A1LX3 sing 20 n n 
C09 C16 A1LX3 sing 21 n n 
C11 C12 A1LX3 doub 22 n y 
C18 C19 A1LX3 doub 23 n y 
C13 H1 A1LX3 sing 24 n n 
C17 H2 A1LX3 sing 25 n n 
C20 H3 A1LX3 sing 26 n n 
C01 H4 A1LX3 sing 27 n n 
C01 H5 A1LX3 sing 28 n n 
C01 H6 A1LX3 sing 29 n n 
C03 H7 A1LX3 sing 30 n n 
C03 H8 A1LX3 sing 31 n n 
C04 H9 A1LX3 sing 32 n n 
C04 H10 A1LX3 sing 33 n n 
C05 H11 A1LX3 sing 34 n n 
C05 H12 A1LX3 sing 35 n n 
C07 H13 A1LX3 sing 36 n n 
C07 H14 A1LX3 sing 37 n n 
C08 H16 A1LX3 sing 38 n n 
C08 H17 A1LX3 sing 39 n n 
C09 H19 A1LX3 sing 40 n n 
C11 H20 A1LX3 sing 41 n n 
C12 H21 A1LX3 sing 42 n n 
C14 H22 A1LX3 sing 43 n n 
C18 H23 A1LX3 sing 44 n n 
C19 H24 A1LX3 sing 45 n n 
N02 H25 A1LX3 sing 46 n n 
C08 C07 A1LX3 sing 47 n n 
#
_atom_sites.entry_id                     8Y8Z 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1LX3 A 1 701 716 A1LX3 LIG . 
D 3 NA A 1 702 8 NA NA . 
E 4 CL A 1 703 1 CL CL . 
F 2 A1LX3 E 1 701 716 A1LX3 LIG . 
G 3 NA E 1 702 9 NA NA . 
H 4 CL E 1 703 2 CL CL . 
I 5 HOH A 1 801 2 HOH HOH . 
I 5 HOH A 2 802 3 HOH HOH . 
J 5 HOH E 1 801 6 HOH HOH . 
J 5 HOH E 2 802 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1LX3 . . . F 2 108.372 136.14 124.108 1 30 ? C10 A1LX3 701 E 1 
HETATM 2 C C13 A1LX3 . . . F 2 106.291 137.275 122.729 1 30 ? C13 A1LX3 701 E 1 
HETATM 3 C C15 A1LX3 . . . F 2 108.575 137.318 123.6 1 30 ? C15 A1LX3 701 E 1 
HETATM 4 C C17 A1LX3 . . . F 2 111.885 134.852 124.251 1 30 ? C17 A1LX3 701 E 1 
HETATM 5 C C20 A1LX3 . . . F 2 112.217 137.286 123.213 1 30 ? C20 A1LX3 701 E 1 
HETATM 6 C C21 A1LX3 . . . F 2 110.952 136.931 123.792 1 30 ? C21 A1LX3 701 E 1 
HETATM 7 C C01 A1LX3 . . . F 2 107.481 142.788 123.33 1 30 ? C01 A1LX3 701 E 1 
HETATM 8 C C03 A1LX3 . . . F 2 109.507 141.613 123.251 1 30 ? C03 A1LX3 701 E 1 
HETATM 9 C C04 A1LX3 . . . F 2 110.223 140.405 123.844 1 30 ? C04 A1LX3 701 E 1 
HETATM 10 C C05 A1LX3 . . . F 2 110.095 139.165 122.967 1 30 ? C05 A1LX3 701 E 1 
HETATM 11 C C06 A1LX3 . . . F 2 109.851 137.917 123.801 1 30 ? C06 A1LX3 701 E 1 
HETATM 12 C C07 A1LX3 . . . F 2 109.738 138.221 125.306 1 30 ? C07 A1LX3 701 E 1 
HETATM 13 C C08 A1LX3 . . . F 2 109.518 136.51 126.038 1 30 ? C08 A1LX3 701 E 1 
HETATM 14 C C09 A1LX3 . . . F 2 109.454 135.53 124.848 1 30 ? C09 A1LX3 701 E 1 
HETATM 15 C C11 A1LX3 . . . F 2 107.061 135.536 123.884 1 30 ? C11 A1LX3 701 E 1 
HETATM 16 C C12 A1LX3 . . . F 2 106.093 136.13 123.22 1 30 ? C12 A1LX3 701 E 1 
HETATM 17 C C14 A1LX3 . . . F 2 107.452 137.902 122.869 1 30 ? C14 A1LX3 701 E 1 
HETATM 18 C C16 A1LX3 . . . F 2 110.768 135.788 124.281 1 30 ? C16 A1LX3 701 E 1 
HETATM 19 C C18 A1LX3 . . . F 2 113.086 135.206 123.707 1 30 ? C18 A1LX3 701 E 1 
HETATM 20 C C19 A1LX3 . . . F 2 113.23 136.414 123.196 1 30 ? C19 A1LX3 701 E 1 
HETATM 21 N N02 A1LX3 . . . F 2 108.068 141.468 123.327 1 30 ? N02 A1LX3 701 E 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           211 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#