data_8Y92
#
_model_server_result.job_id            03hQibSyWRktLuIoqxpnSA 
_model_server_result.datetime_utc      '2024-11-14 08:13:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8y92 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    8Y92 
#
_exptl.entry_id    8Y92 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              255.355 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R)-N-methyl-3-(2-methylphenoxy)-3-phenyl-propan-1-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Y92 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Y92 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O GLY 71 B GLY 71 1_555 F NA NA . B NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 B OD2 ASP 418 B ASP 418 1_555 F NA NA . B NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? 
#
_chem_comp.formula           'C17 H21 N O' 
_chem_comp.formula_weight    255.355 
_chem_comp.id                A1LX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R)-N-methyl-3-(2-methylphenoxy)-3-phenyl-propan-1-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Atomoxetine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C17 A1LX4 doub 1 n y 
C16 C15 A1LX4 sing 2 n y 
C17 C18 A1LX4 sing 3 n y 
C15 C14 A1LX4 doub 4 n y 
C18 C19 A1LX4 doub 5 n y 
C14 C19 A1LX4 sing 6 n y 
C14 C09 A1LX4 sing 7 n n 
C13 N12 A1LX4 sing 8 n n 
C10 C09 A1LX4 sing 9 n n 
C10 C11 A1LX4 sing 10 n n 
C09 O08 A1LX4 sing 11 n n 
C06 C05 A1LX4 doub 12 n y 
C06 C07 A1LX4 sing 13 n y 
N12 C11 A1LX4 sing 14 n n 
C05 C04 A1LX4 sing 15 n y 
O08 C07 A1LX4 sing 16 n n 
C07 C02 A1LX4 doub 17 n y 
C04 C03 A1LX4 doub 18 n y 
C02 C03 A1LX4 sing 19 n y 
C02 C01 A1LX4 sing 20 n n 
C10 H1 A1LX4 sing 21 n n 
C10 H2 A1LX4 sing 22 n n 
N12 H4 A1LX4 sing 23 n n 
C13 H5 A1LX4 sing 24 n n 
C13 H6 A1LX4 sing 25 n n 
C13 H7 A1LX4 sing 26 n n 
C15 H8 A1LX4 sing 27 n n 
C17 H9 A1LX4 sing 28 n n 
C01 H10 A1LX4 sing 29 n n 
C01 H11 A1LX4 sing 30 n n 
C01 H12 A1LX4 sing 31 n n 
C03 H13 A1LX4 sing 32 n n 
C04 H14 A1LX4 sing 33 n n 
C05 H15 A1LX4 sing 34 n n 
C06 H16 A1LX4 sing 35 n n 
C09 H17 A1LX4 sing 36 n n 
C11 H18 A1LX4 sing 37 n n 
C11 H19 A1LX4 sing 38 n n 
C16 H20 A1LX4 sing 39 n n 
C18 H21 A1LX4 sing 40 n n 
C19 H22 A1LX4 sing 41 n n 
#
_atom_sites.entry_id                     8Y92 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1LX4 A 1 701 701 A1LX4 LIG . 
D 3 CL A 1 702 5 CL CL . 
E 2 A1LX4 B 1 701 701 A1LX4 LIG . 
F 4 NA B 1 702 4 NA NA . 
G 3 CL B 1 703 6 CL CL . 
H 5 HOH A 1 801 4 HOH HOH . 
H 5 HOH A 2 802 3 HOH HOH . 
H 5 HOH A 3 803 1 HOH HOH . 
I 5 HOH B 1 801 5 HOH HOH . 
I 5 HOH B 2 802 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1LX4 . . . E 2 121.844 140.532 113.642 1 30 ? C10 A1LX4 701 B 1 
HETATM 2 N N12 A1LX4 . . . E 2 121.645 142.604 114.835 1 30 ? N12 A1LX4 701 B 1 
HETATM 3 C C13 A1LX4 . . . E 2 121.597 143.287 113.569 1 30 ? C13 A1LX4 701 B 1 
HETATM 4 C C15 A1LX4 . . . E 2 118.853 138.929 113.103 1 30 ? C15 A1LX4 701 B 1 
HETATM 5 C C17 A1LX4 . . . E 2 117.963 138.917 110.894 1 30 ? C17 A1LX4 701 B 1 
HETATM 6 C C01 A1LX4 . . . E 2 119.533 137.126 116.659 1 30 ? C01 A1LX4 701 B 1 
HETATM 7 C C02 A1LX4 . . . E 2 120.673 136.51 115.877 1 30 ? C02 A1LX4 701 B 1 
HETATM 8 C C03 A1LX4 . . . E 2 120.981 135.186 116.066 1 30 ? C03 A1LX4 701 B 1 
HETATM 9 C C04 A1LX4 . . . E 2 122.017 134.621 115.364 1 30 ? C04 A1LX4 701 B 1 
HETATM 10 C C05 A1LX4 . . . E 2 122.742 135.375 114.467 1 30 ? C05 A1LX4 701 B 1 
HETATM 11 C C06 A1LX4 . . . E 2 122.429 136.706 114.283 1 30 ? C06 A1LX4 701 B 1 
HETATM 12 C C07 A1LX4 . . . E 2 121.392 137.274 114.991 1 30 ? C07 A1LX4 701 B 1 
HETATM 13 O O08 A1LX4 . . . E 2 121.064 138.615 114.8 1 30 ? O08 A1LX4 701 B 1 
HETATM 14 C C09 A1LX4 . . . E 2 121.363 139.092 113.525 1 30 ? C09 A1LX4 701 B 1 
HETATM 15 C C11 A1LX4 . . . E 2 121.024 141.325 114.64 1 30 ? C11 A1LX4 701 B 1 
HETATM 16 C C14 A1LX4 . . . E 2 120.141 139.031 112.606 1 30 ? C14 A1LX4 701 B 1 
HETATM 17 C C16 A1LX4 . . . E 2 117.767 138.873 112.255 1 30 ? C16 A1LX4 701 B 1 
HETATM 18 C C18 A1LX4 . . . E 2 119.244 139.018 110.396 1 30 ? C18 A1LX4 701 B 1 
HETATM 19 C C19 A1LX4 . . . E 2 120.33 139.071 111.244 1 30 ? C19 A1LX4 701 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#