data_8Y93 # _model_server_result.job_id 7qXje-Y150jRY6P4Ijx50Q _model_server_result.datetime_utc '2024-12-22 01:42:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8y93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8Y93 # _exptl.entry_id 8Y93 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 277.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Amitriptyline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Y93 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Y93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 71 A GLY 71 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A O VAL 74 A VAL 74 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc3 A O LEU 415 A LEU 415 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? # _chem_comp.formula 'C20 H23 N' _chem_comp.formula_weight 277.403 _chem_comp.id TP0 _chem_comp.mon_nstd_flag . _chem_comp.name Amitriptyline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N,N-dimethylpropan-1-amine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C14 TP0 sing 304 n n N1 C19 TP0 sing 305 n n N1 C20 TP0 sing 306 n n C3 C6 TP0 sing 307 n n C3 C7 TP0 sing 308 n n C3 C8 TP0 doub 309 n n C4 C6 TP0 doub 310 n y C4 C10 TP0 sing 311 n y C4 C21 TP0 sing 312 n n C5 C7 TP0 doub 313 n y C5 C11 TP0 sing 314 n y C5 C22 TP0 sing 315 n n C6 C12 TP0 sing 316 n y C7 C13 TP0 sing 317 n y C8 C29 TP0 sing 318 n n C10 C15 TP0 doub 319 n y C11 C16 TP0 doub 320 n y C12 C17 TP0 doub 321 n y C13 C18 TP0 doub 322 n y C14 C29 TP0 sing 323 n n C15 C17 TP0 sing 324 n y C16 C18 TP0 sing 325 n y C21 C22 TP0 sing 326 n n C8 H8 TP0 sing 327 n n C10 H10 TP0 sing 328 n n C11 H11 TP0 sing 329 n n C12 H12 TP0 sing 330 n n C13 H13 TP0 sing 331 n n C14 H14 TP0 sing 332 n n C14 H14A TP0 sing 333 n n C15 H15 TP0 sing 334 n n C16 H16 TP0 sing 335 n n C17 H17 TP0 sing 336 n n C18 H18 TP0 sing 337 n n C19 H19 TP0 sing 338 n n C19 H19A TP0 sing 339 n n C19 H19B TP0 sing 340 n n C20 H20 TP0 sing 341 n n C20 H20A TP0 sing 342 n n C20 H20B TP0 sing 343 n n C21 H21 TP0 sing 344 n n C21 H21A TP0 sing 345 n n C22 H22 TP0 sing 346 n n C22 H22A TP0 sing 347 n n C29 H29 TP0 sing 348 n n C29 H29A TP0 sing 349 n n # _atom_sites.entry_id 8Y93 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TP0 A 1 701 716 TP0 TP0 . D 3 NA A 1 702 7 NA NA . E 4 CL A 1 703 1 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 TP0 . . . C 2 117.821 113.927 92.521 1 30 ? N1 TP0 701 A 1 HETATM 2 C C3 TP0 . . . C 2 117.445 114.667 97.126 1 30 ? C3 TP0 701 A 1 HETATM 3 C C4 TP0 . . . C 2 117.733 117.17 97.244 1 30 ? C4 TP0 701 A 1 HETATM 4 C C5 TP0 . . . C 2 118.694 114.962 99.375 1 30 ? C5 TP0 701 A 1 HETATM 5 C C6 TP0 . . . C 2 116.924 116.121 96.949 1 30 ? C6 TP0 701 A 1 HETATM 6 C C7 TP0 . . . C 2 117.956 114.219 98.499 1 30 ? C7 TP0 701 A 1 HETATM 7 C C8 TP0 . . . C 2 117.44 113.682 96.21 1 30 ? C8 TP0 701 A 1 HETATM 8 C C10 TP0 . . . C 2 117.312 118.511 97.137 1 30 ? C10 TP0 701 A 1 HETATM 9 C C11 TP0 . . . C 2 119.043 114.396 100.622 1 30 ? C11 TP0 701 A 1 HETATM 10 C C12 TP0 . . . C 2 115.589 116.377 96.541 1 30 ? C12 TP0 701 A 1 HETATM 11 C C13 TP0 . . . C 2 117.56 112.916 98.857 1 30 ? C13 TP0 701 A 1 HETATM 12 C C14 TP0 . . . C 2 117.983 114.47 93.84 1 30 ? C14 TP0 701 A 1 HETATM 13 C C15 TP0 . . . C 2 116.012 118.759 96.721 1 30 ? C15 TP0 701 A 1 HETATM 14 C C16 TP0 . . . C 2 118.674 113.11 100.963 1 30 ? C16 TP0 701 A 1 HETATM 15 C C17 TP0 . . . C 2 115.154 117.695 96.422 1 30 ? C17 TP0 701 A 1 HETATM 16 C C18 TP0 . . . C 2 117.92 112.37 100.076 1 30 ? C18 TP0 701 A 1 HETATM 17 C C19 TP0 . . . C 2 117.009 114.813 91.72 1 30 ? C19 TP0 701 A 1 HETATM 18 C C20 TP0 . . . C 2 116.973 112.84 92.832 1 30 ? C20 TP0 701 A 1 HETATM 19 C C21 TP0 . . . C 2 119.184 116.946 97.708 1 30 ? C21 TP0 701 A 1 HETATM 20 C C22 TP0 . . . C 2 119.182 116.405 99.132 1 30 ? C22 TP0 701 A 1 HETATM 21 C C29 TP0 . . . C 2 116.962 113.771 94.744 1 30 ? C29 TP0 701 A 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #