data_8Y9F
#
_model_server_result.job_id            aIjvclG-InJtJ6fQ4OfHlg 
_model_server_result.datetime_utc      '2024-11-28 08:49:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8y9f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    8Y9F 
#
_exptl.entry_id    8Y9F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Y9F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Y9F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 39 B ASP 39 1_555 A N ALY 40 B ALY 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C ALY 40 B ALY 40 1_555 A N SER 41 B SER 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 209 n n 
PG O2G GTP sing 210 n n 
PG O3G GTP sing 211 n n 
PG O3B GTP sing 212 n n 
O2G HOG2 GTP sing 213 n n 
O3G HOG3 GTP sing 214 n n 
O3B PB GTP sing 215 n n 
PB O1B GTP doub 216 n n 
PB O2B GTP sing 217 n n 
PB O3A GTP sing 218 n n 
O2B HOB2 GTP sing 219 n n 
O3A PA GTP sing 220 n n 
PA O1A GTP doub 221 n n 
PA O2A GTP sing 222 n n 
PA O5' GTP sing 223 n n 
O2A HOA2 GTP sing 224 n n 
O5' C5' GTP sing 225 n n 
C5' C4' GTP sing 226 n n 
C5' H5' GTP sing 227 n n 
C5' "H5''" GTP sing 228 n n 
C4' O4' GTP sing 229 n n 
C4' C3' GTP sing 230 n n 
C4' H4' GTP sing 231 n n 
O4' C1' GTP sing 232 n n 
C3' O3' GTP sing 233 n n 
C3' C2' GTP sing 234 n n 
C3' H3' GTP sing 235 n n 
O3' HO3' GTP sing 236 n n 
C2' O2' GTP sing 237 n n 
C2' C1' GTP sing 238 n n 
C2' H2' GTP sing 239 n n 
O2' HO2' GTP sing 240 n n 
C1' N9 GTP sing 241 n n 
C1' H1' GTP sing 242 n n 
N9 C8 GTP sing 243 n y 
N9 C4 GTP sing 244 n y 
C8 N7 GTP doub 245 n y 
C8 H8 GTP sing 246 n n 
N7 C5 GTP sing 247 n y 
C5 C6 GTP sing 248 n n 
C5 C4 GTP doub 249 n y 
C6 O6 GTP doub 250 n n 
C6 N1 GTP sing 251 n n 
N1 C2 GTP sing 252 n n 
N1 HN1 GTP sing 253 n n 
C2 N2 GTP sing 254 n n 
C2 N3 GTP doub 255 n n 
N2 HN21 GTP sing 256 n n 
N2 HN22 GTP sing 257 n n 
N3 C4 GTP sing 258 n n 
#
_atom_sites.entry_id                     8Y9F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP B 1 501 603 GTP GTP . 
H 6 G2P D 1 601 601 G2P G2P . 
I 5 GTP E 1 501 604 GTP GTP . 
J 6 G2P F 1 601 601 G2P G2P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . G 5 174.208 282.498 198.873 1 69.4 ? PG GTP 501 B 1 
HETATM 2 O O1G GTP . . . G 5 173.702 281.186 199.36 1 69.4 ? O1G GTP 501 B 1 
HETATM 3 O O2G GTP . . . G 5 173.17 283.305 198.183 1 69.4 ? O2G GTP 501 B 1 
HETATM 4 O O3G GTP . . . G 5 175.448 282.357 198.066 1 69.4 ? O3G GTP 501 B 1 
HETATM 5 O O3B GTP . . . G 5 174.58 283.353 200.161 1 69.4 ? O3B GTP 501 B 1 
HETATM 6 P PB GTP . . . G 5 175.632 283.035 201.311 1 69.4 ? PB GTP 501 B 1 
HETATM 7 O O1B GTP . . . G 5 175.926 281.588 201.291 1 69.4 ? O1B GTP 501 B 1 
HETATM 8 O O2B GTP . . . G 5 175.213 283.674 202.572 1 69.4 ? O2B GTP 501 B 1 
HETATM 9 O O3A GTP . . . G 5 176.92 283.803 200.803 1 69.4 ? O3A GTP 501 B 1 
HETATM 10 P PA GTP . . . G 5 178.329 283.188 201.172 1 69.4 ? PA GTP 501 B 1 
HETATM 11 O O1A GTP . . . G 5 178.276 282.911 202.628 1 69.4 ? O1A GTP 501 B 1 
HETATM 12 O O2A GTP . . . G 5 178.622 282.068 200.236 1 69.4 ? O2A GTP 501 B 1 
HETATM 13 O O5' GTP . . . G 5 179.33 284.398 200.881 1 69.4 ? O5' GTP 501 B 1 
HETATM 14 C C5' GTP . . . G 5 179.469 285.462 201.84 1 69.4 ? C5' GTP 501 B 1 
HETATM 15 C C4' GTP . . . G 5 180.779 285.306 202.567 1 69.4 ? C4' GTP 501 B 1 
HETATM 16 O O4' GTP . . . G 5 180.868 283.97 203.108 1 69.4 ? O4' GTP 501 B 1 
HETATM 17 C C3' GTP . . . G 5 182.056 285.485 201.738 1 69.4 ? C3' GTP 501 B 1 
HETATM 18 O O3' GTP . . . G 5 182.809 286.558 202.281 1 69.4 ? O3' GTP 501 B 1 
HETATM 19 C C2' GTP . . . G 5 182.794 284.153 201.911 1 69.4 ? C2' GTP 501 B 1 
HETATM 20 O O2' GTP . . . G 5 184.191 284.291 202.008 1 69.4 ? O2' GTP 501 B 1 
HETATM 21 C C1' GTP . . . G 5 182.227 283.668 203.23 1 69.4 ? C1' GTP 501 B 1 
HETATM 22 N N9 GTP . . . G 5 182.343 282.237 203.427 1 69.4 ? N9 GTP 501 B 1 
HETATM 23 C C8 GTP . . . G 5 181.749 281.258 202.683 1 69.4 ? C8 GTP 501 B 1 
HETATM 24 N N7 GTP . . . G 5 182.015 280.054 203.118 1 69.4 ? N7 GTP 501 B 1 
HETATM 25 C C5 GTP . . . G 5 182.824 280.26 204.223 1 69.4 ? C5 GTP 501 B 1 
HETATM 26 C C6 GTP . . . G 5 183.418 279.328 205.1 1 69.4 ? C6 GTP 501 B 1 
HETATM 27 O O6 GTP . . . G 5 183.34 278.096 205.083 1 69.4 ? O6 GTP 501 B 1 
HETATM 28 N N1 GTP . . . G 5 184.164 279.964 206.081 1 69.4 ? N1 GTP 501 B 1 
HETATM 29 C C2 GTP . . . G 5 184.316 281.316 206.211 1 69.4 ? C2 GTP 501 B 1 
HETATM 30 N N2 GTP . . . G 5 185.077 281.735 207.228 1 69.4 ? N2 GTP 501 B 1 
HETATM 31 N N3 GTP . . . G 5 183.755 282.2 205.392 1 69.4 ? N3 GTP 501 B 1 
HETATM 32 C C4 GTP . . . G 5 183.028 281.6 204.425 1 69.4 ? C4 GTP 501 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#