data_8YAJ
#
_model_server_result.job_id            DUBXdNkOK-jD3WtDmCrQBQ 
_model_server_result.datetime_utc      '2024-11-28 08:51:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yaj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    8YAJ 
#
_exptl.entry_id    8YAJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              302.368 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YAJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YAJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C8 H18 N2 O6 S2' 
_chem_comp.formula_weight    302.368 
_chem_comp.id                PIN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PIPES;1,4-PIPERAZINEDIETHANESULFONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PIN sing 360 n n 
C1 S1 PIN sing 361 n n 
C1 H11 PIN sing 362 n n 
C1 H12 PIN sing 363 n n 
C2 N1 PIN sing 364 n n 
C2 H21 PIN sing 365 n n 
C2 H22 PIN sing 366 n n 
N1 C3 PIN sing 367 n n 
N1 C4 PIN sing 368 n n 
C3 C4' PIN sing 369 n n 
C3 H31 PIN sing 370 n n 
C3 H32 PIN sing 371 n n 
C4 C3' PIN sing 372 n n 
C4 H41 PIN sing 373 n n 
C4 H42 PIN sing 374 n n 
C1' C2' PIN sing 375 n n 
C1' S1' PIN sing 376 n n 
C1' "H1'1" PIN sing 377 n n 
C1' "H1'2" PIN sing 378 n n 
C2' N1' PIN sing 379 n n 
C2' "H2'1" PIN sing 380 n n 
C2' "H2'2" PIN sing 381 n n 
N1' C3' PIN sing 382 n n 
N1' C4' PIN sing 383 n n 
C3' "H3'1" PIN sing 384 n n 
C3' "H3'2" PIN sing 385 n n 
C4' "H4'1" PIN sing 386 n n 
C4' "H4'2" PIN sing 387 n n 
S1 O1 PIN doub 388 n n 
S1 O2 PIN doub 389 n n 
S1 O3 PIN sing 390 n n 
S1' O1' PIN doub 391 n n 
S1' O2' PIN doub 392 n n 
S1' O3' PIN sing 393 n n 
O3 HO3 PIN sing 394 n n 
O3' HO3' PIN sing 395 n n 
#
_atom_sites.entry_id                     8YAJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GTP B 1 501 501 GTP GTP . 
H 5 PIN C 1 301 201 PIN PIN . 
I 6 G2P D 1 501 501 G2P G2P . 
J 4 GTP E 1 501 501 GTP GTP . 
K 6 G2P F 1 501 501 G2P G2P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIN . . . H 5 187.445 242.45 241.697 1 145.64 ? C1 PIN 301 C 1 
HETATM 2 C C2 PIN . . . H 5 186.053 242.96 241.381 1 145.64 ? C2 PIN 301 C 1 
HETATM 3 N N1 PIN . . . H 5 185.934 243.338 239.94 1 145.64 ? N1 PIN 301 C 1 
HETATM 4 C C3 PIN . . . H 5 186.799 244.505 239.654 1 145.64 ? C3 PIN 301 C 1 
HETATM 5 C C4 PIN . . . H 5 184.545 243.705 239.604 1 145.64 ? C4 PIN 301 C 1 
HETATM 6 C C1' PIN . . . H 5 184.699 247.364 237.137 1 145.64 ? C1' PIN 301 C 1 
HETATM 7 C C2' PIN . . . H 5 184.831 246.338 238.242 1 145.64 ? C2' PIN 301 C 1 
HETATM 8 N N1' PIN . . . H 5 185.331 245.046 237.693 1 145.64 ? N1' PIN 301 C 1 
HETATM 9 C C3' PIN . . . H 5 184.447 243.918 238.11 1 145.64 ? C3' PIN 301 C 1 
HETATM 10 C C4' PIN . . . H 5 186.747 244.824 238.146 1 145.64 ? C4' PIN 301 C 1 
HETATM 11 S S1 PIN . . . H 5 187.6 240.728 241.297 1 145.64 ? S1 PIN 301 C 1 
HETATM 12 S S1' PIN . . . H 5 183.488 248.588 237.553 1 145.64 ? S1' PIN 301 C 1 
HETATM 13 O O1 PIN . . . H 5 187.739 240.691 239.872 1 145.64 ? O1 PIN 301 C 1 
HETATM 14 O O2 PIN . . . H 5 186.395 240.12 241.772 1 145.64 ? O2 PIN 301 C 1 
HETATM 15 O O3 PIN . . . H 5 188.777 240.317 242.006 1 145.64 ? O3 PIN 301 C 1 
HETATM 16 O O1' PIN . . . H 5 182.302 247.846 237.852 1 145.64 ? O1' PIN 301 C 1 
HETATM 17 O O2' PIN . . . H 5 183.38 249.412 236.387 1 145.64 ? O2' PIN 301 C 1 
HETATM 18 O O3' PIN . . . H 5 184.051 249.26 238.69 1 145.64 ? O3' PIN 301 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#