data_8YAL
#
_model_server_result.job_id            J2s-yhk4Sy97qiWrUh5BYQ 
_model_server_result.datetime_utc      '2024-11-28 06:48:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yal 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":501}' 
#
_entry.id    8YAL 
#
_exptl.entry_id    8YAL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              521.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YAL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YAL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 K N N 
#
_chem_comp.formula           'C11 H18 N5 O13 P3' 
_chem_comp.formula_weight    521.208 
_chem_comp.id                G2P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G G2P sing 174 n n 
PG O2G G2P doub 175 n n 
PG O3G G2P sing 176 n n 
PG O3B G2P sing 177 n n 
O3B PB G2P sing 178 n n 
PB O1B G2P sing 179 n n 
PB O2B G2P doub 180 n n 
PB C3A G2P sing 181 n n 
C3A PA G2P sing 182 n n 
C3A H3A1 G2P sing 183 n n 
C3A H3A2 G2P sing 184 n n 
PA O1A G2P sing 185 n n 
PA O2A G2P doub 186 n n 
PA O5' G2P sing 187 n n 
O5' C5' G2P sing 188 n n 
C5' C4' G2P sing 189 n n 
C5' "H5'1" G2P sing 190 n n 
C5' "H5'2" G2P sing 191 n n 
C4' O4' G2P sing 192 n n 
C4' C3' G2P sing 193 n n 
C4' H4' G2P sing 194 n n 
O4' C1' G2P sing 195 n n 
C3' O3' G2P sing 196 n n 
C3' C2' G2P sing 197 n n 
C3' H3' G2P sing 198 n n 
O3' HA G2P sing 199 n n 
C2' O2' G2P sing 200 n n 
C2' C1' G2P sing 201 n n 
C2' H2' G2P sing 202 n n 
O2' HB G2P sing 203 n n 
C1' N9 G2P sing 204 n n 
C1' H1' G2P sing 205 n n 
N9 C8 G2P sing 206 n y 
N9 C4 G2P sing 207 n y 
C8 N7 G2P doub 208 n y 
C8 H8 G2P sing 209 n n 
N7 C5 G2P sing 210 n y 
C5 C6 G2P sing 211 n y 
C5 C4 G2P doub 212 n y 
C6 O6 G2P doub 213 n n 
C6 N1 G2P sing 214 n y 
N1 C2 G2P sing 215 n y 
N1 H1 G2P sing 216 n n 
C2 N2 G2P sing 217 n n 
C2 N3 G2P doub 218 n y 
N2 H2N1 G2P sing 219 n n 
N2 H2N2 G2P sing 220 n n 
N3 C4 G2P sing 221 n y 
HO1 O1G G2P sing 222 n n 
HO2 O3G G2P sing 223 n n 
HO3 O1A G2P sing 224 n n 
HO4 O1B G2P sing 225 n n 
#
_atom_sites.entry_id                     8YAL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GTP B 1 501 501 GTP GTP . 
H 5 ACO C 1 301 201 ACO ACO . 
I 6 G2P D 1 501 501 G2P G2P . 
J 4 GTP E 1 501 501 GTP GTP . 
K 6 G2P F 1 501 501 G2P G2P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG G2P . . . K 6 136.47 239.601 230.763 1 47.82 ? PG G2P 501 F 1 
HETATM 2 O O1G G2P . . . K 6 135.104 239.226 230.334 1 47.82 ? O1G G2P 501 F 1 
HETATM 3 O O2G G2P . . . K 6 137.013 240.722 229.961 1 47.82 ? O2G G2P 501 F 1 
HETATM 4 O O3G G2P . . . K 6 137.408 238.432 230.84 1 47.82 ? O3G G2P 501 F 1 
HETATM 5 O O3B G2P . . . K 6 136.277 240.157 232.228 1 47.82 ? O3B G2P 501 F 1 
HETATM 6 P PB G2P . . . K 6 137.377 240.675 233.209 1 47.82 ? PB G2P 501 F 1 
HETATM 7 O O1B G2P . . . K 6 138.571 239.807 232.991 1 47.82 ? O1B G2P 501 F 1 
HETATM 8 O O2B G2P . . . K 6 136.838 240.752 234.596 1 47.82 ? O2B G2P 501 F 1 
HETATM 9 C C3A G2P . . . K 6 137.785 242.34 232.715 1 47.82 ? C3A G2P 501 F 1 
HETATM 10 P PA G2P . . . K 6 139.257 242.799 233.602 1 47.82 ? PA G2P 501 F 1 
HETATM 11 O O1A G2P . . . K 6 139.478 241.792 234.675 1 47.82 ? O1A G2P 501 F 1 
HETATM 12 O O2A G2P . . . K 6 140.36 242.908 232.605 1 47.82 ? O2A G2P 501 F 1 
HETATM 13 O O5' G2P . . . K 6 138.92 244.182 234.262 1 47.82 ? O5' G2P 501 F 1 
HETATM 14 C C5' G2P . . . K 6 138.977 245.401 233.509 1 47.82 ? C5' G2P 501 F 1 
HETATM 15 C C4' G2P . . . K 6 139.616 246.46 234.368 1 47.82 ? C4' G2P 501 F 1 
HETATM 16 O O4' G2P . . . K 6 140.651 245.844 235.176 1 47.82 ? O4' G2P 501 F 1 
HETATM 17 C C3' G2P . . . K 6 140.335 247.583 233.617 1 47.82 ? C3' G2P 501 F 1 
HETATM 18 O O3' G2P . . . K 6 140.363 248.729 234.452 1 47.82 ? O3' G2P 501 F 1 
HETATM 19 C C2' G2P . . . K 6 141.767 247.061 233.59 1 47.82 ? C2' G2P 501 F 1 
HETATM 20 O O2' G2P . . . K 6 142.686 248.103 233.372 1 47.82 ? O2' G2P 501 F 1 
HETATM 21 C C1' G2P . . . K 6 141.846 246.563 235.017 1 47.82 ? C1' G2P 501 F 1 
HETATM 22 N N9 G2P . . . K 6 142.957 245.663 235.266 1 47.82 ? N9 G2P 501 F 1 
HETATM 23 C C8 G2P . . . K 6 143.382 244.659 234.441 1 47.82 ? C8 G2P 501 F 1 
HETATM 24 N N7 G2P . . . K 6 144.404 244 234.921 1 47.82 ? N7 G2P 501 F 1 
HETATM 25 C C5 G2P . . . K 6 144.678 244.629 236.126 1 47.82 ? C5 G2P 501 F 1 
HETATM 26 C C6 G2P . . . K 6 145.681 244.359 237.079 1 47.82 ? C6 G2P 501 F 1 
HETATM 27 O O6 G2P . . . K 6 146.552 243.484 237.045 1 47.82 ? O6 G2P 501 F 1 
HETATM 28 N N1 G2P . . . K 6 145.609 245.234 238.155 1 47.82 ? N1 G2P 501 F 1 
HETATM 29 C C2 G2P . . . K 6 144.694 246.238 238.301 1 47.82 ? C2 G2P 501 F 1 
HETATM 30 N N2 G2P . . . K 6 144.794 246.979 239.411 1 47.82 ? N2 G2P 501 F 1 
HETATM 31 N N3 G2P . . . K 6 143.744 246.494 237.409 1 47.82 ? N3 G2P 501 F 1 
HETATM 32 C C4 G2P . . . K 6 143.798 245.656 236.35 1 47.82 ? C4 G2P 501 F 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#