data_8YAN # _model_server_result.job_id HsJb9H7YRWsy0j3bZaEp1w _model_server_result.datetime_utc '2024-10-19 03:36:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yan # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8YAN # _exptl.entry_id 8YAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 269.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N},~{N}-dimethyl-2-[(1-methyl-9~{H}-pyrido[3,4-b]indol-7-yl)oxy]ethanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8YAN _cell.length_a 116.39 _cell.length_b 116.39 _cell.length_c 57.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' U 12 A U 12 1_555 A P N 13 A N 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale2 A O3' N 14 A N 14 1_555 A P N 15 A N 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale3 A O3' N 15 A N 15 1_555 A P C 16 A C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 1 1_555 A N1 G 20 A G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 1 A C 1 1_555 A O6 G 20 A G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 1 A C 1 1_555 A N2 G 20 A G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 U 2 A U 2 1_555 A N1 A 19 A A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 U 2 A U 2 1_555 A N6 A 19 A A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 G 3 A G 3 1_555 A N3 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 G 3 A G 3 1_555 A O2 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 G 3 A G 3 1_555 A N4 C 18 A C 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 G 4 A G 4 1_555 A N3 C 17 A C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 G 4 A G 4 1_555 A O2 C 17 A C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 G 4 A G 4 1_555 A N4 C 17 A C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 G 5 A G 5 1_555 A N3 C 16 A C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 G 5 A G 5 1_555 A O2 C 16 A C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 G 5 A G 5 1_555 A N4 C 16 A C 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_10_PAIR hydrog15 A N2 G 5 A G 5 1_555 A N1 A 27 A A 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_10_PAIR hydrog16 A N3 G 5 A G 5 1_555 A N6 A 27 A A 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog17 A N3 U 6 A U 6 1_555 A N7 A 28 A A 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog18 A O4 U 6 A U 6 1_555 A N6 A 28 A A 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog19 A N4 C 7 A C 7 1_555 A N7 G 11 A G 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog20 A O2 C 7 A C 7 1_555 A N6 A 29 A A 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-C MISPAIR' hydrog21 A O2 C 7 A C 7 1_555 A N4 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_10_PAIR hydrog22 A N2 G 8 A G 8 1_555 A N1 A 31 A A 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_10_PAIR hydrog23 A N3 G 8 A G 8 1_555 A N6 A 31 A A 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 C 9 A C 9 1_555 A N1 G 33 A G 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 C 9 A C 9 1_555 A O6 G 33 A G 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 C 9 A C 9 1_555 A N2 G 33 A G 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog27 A N3 A 10 A A 10 1_555 A N6 A 32 A A 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 G 11 A G 11 1_555 A N3 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 G 11 A G 11 1_555 A O2 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 G 11 A G 11 1_555 A N4 C 30 A C 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog31 A O2 C 16 A C 16 1_555 A N6 A 28 A A 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog32 A O2 C 17 A C 17 1_555 A N6 A 26 A A 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C16 H19 N3 O' _chem_comp.formula_weight 269.342 _chem_comp.id A1LYL _chem_comp.mon_nstd_flag . _chem_comp.name ~{N},~{N}-dimethyl-2-[(1-methyl-9~{H}-pyrido[3,4-b]indol-7-yl)oxy]ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 A1LYL sing 40 n n C03 C02 A1LYL doub 41 n y C04 C03 A1LYL sing 42 n y C07 C06 A1LYL doub 43 n y C08 C07 A1LYL sing 44 n y C10 O09 A1LYL sing 45 n n C11 C10 A1LYL sing 46 n n N12 C11 A1LYL sing 47 n n C13 N12 A1LYL sing 48 n n C14 N12 A1LYL sing 49 n n O09 C08 A1LYL sing 50 n n C15 C08 A1LYL doub 51 n y C06 C05 A1LYL sing 52 n y C16 C05 A1LYL doub 53 n y N17 C16 A1LYL sing 54 n y C05 C04 A1LYL sing 55 n y C18 C04 A1LYL doub 56 n y C19 C18 A1LYL sing 57 n y N20 C19 A1LYL doub 58 n y C02 N20 A1LYL sing 59 n y C03 N17 A1LYL sing 60 n y C15 C16 A1LYL sing 61 n y C10 H102 A1LYL sing 62 n n C10 H101 A1LYL sing 63 n n C13 H132 A1LYL sing 64 n n C13 H131 A1LYL sing 65 n n C13 H133 A1LYL sing 66 n n C15 H151 A1LYL sing 67 n n C01 H013 A1LYL sing 68 n n C01 H011 A1LYL sing 69 n n C01 H012 A1LYL sing 70 n n C06 H061 A1LYL sing 71 n n C07 H071 A1LYL sing 72 n n C11 H112 A1LYL sing 73 n n C11 H111 A1LYL sing 74 n n C14 H141 A1LYL sing 75 n n C14 H142 A1LYL sing 76 n n C14 H143 A1LYL sing 77 n n C18 H181 A1LYL sing 78 n n C19 H191 A1LYL sing 79 n n N17 H171 A1LYL sing 80 n n # _atom_sites.entry_id 8YAN _atom_sites.fract_transf_matrix[1][1] 0.008592 _atom_sites.fract_transf_matrix[1][2] 0.00496 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1LYL A 1 101 1 A1LYL LIG . C 3 HOH A 1 201 4 HOH HOH . C 3 HOH A 2 202 1 HOH HOH . C 3 HOH A 3 203 2 HOH HOH . C 3 HOH A 4 204 5 HOH HOH . C 3 HOH A 5 205 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1LYL . . . B 2 55.053 -17.378 -2.505 1 93.33 ? C10 A1LYL 101 A 1 HETATM 2 N N12 A1LYL . . . B 2 56.157 -19.178 -1.247 1 109.81 ? N12 A1LYL 101 A 1 HETATM 3 C C13 A1LYL . . . B 2 55.167 -19.425 -0.213 1 95.3 ? C13 A1LYL 101 A 1 HETATM 4 C C15 A1LYL . . . B 2 53.477 -16.127 -4.3 1 64.46 ? C15 A1LYL 101 A 1 HETATM 5 C C01 A1LYL . . . B 2 52.882 -13.362 -9.139 1 72.47 ? C01 A1LYL 101 A 1 HETATM 6 C C02 A1LYL . . . B 2 51.679 -13.661 -8.244 1 64.64 ? C02 A1LYL 101 A 1 HETATM 7 C C03 A1LYL . . . B 2 51.887 -14.366 -7.028 1 60.16 ? C03 A1LYL 101 A 1 HETATM 8 C C04 A1LYL . . . B 2 50.797 -14.632 -6.229 1 53.05 ? C04 A1LYL 101 A 1 HETATM 9 C C05 A1LYL . . . B 2 51.315 -15.353 -5.072 1 52.86 ? C05 A1LYL 101 A 1 HETATM 10 C C06 A1LYL . . . B 2 50.718 -15.895 -3.909 1 65.35 ? C06 A1LYL 101 A 1 HETATM 11 C C07 A1LYL . . . B 2 51.511 -16.548 -2.96 1 66.5 ? C07 A1LYL 101 A 1 HETATM 12 C C08 A1LYL . . . B 2 52.892 -16.664 -3.157 1 72.77 ? C08 A1LYL 101 A 1 HETATM 13 C C11 A1LYL . . . B 2 55.489 -18.847 -2.496 1 109.89 ? C11 A1LYL 101 A 1 HETATM 14 C C14 A1LYL . . . B 2 56.977 -20.363 -1.436 1 111.51 ? C14 A1LYL 101 A 1 HETATM 15 C C16 A1LYL . . . B 2 52.673 -15.465 -5.266 1 58.92 ? C16 A1LYL 101 A 1 HETATM 16 C C18 A1LYL . . . B 2 49.524 -14.187 -6.662 1 59.99 ? C18 A1LYL 101 A 1 HETATM 17 C C19 A1LYL . . . B 2 49.405 -13.501 -7.871 1 69.26 ? C19 A1LYL 101 A 1 HETATM 18 N N17 A1LYL . . . B 2 53.004 -14.869 -6.442 1 62.19 ? N17 A1LYL 101 A 1 HETATM 19 N N20 A1LYL . . . B 2 50.478 -13.258 -8.622 1 74.36 ? N20 A1LYL 101 A 1 HETATM 20 O O09 A1LYL . . . B 2 53.684 -17.319 -2.196 1 83.31 ? O09 A1LYL 101 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #