data_8YAR
#
_model_server_result.job_id            Fcygqpbxdk7g9419SSGxKA 
_model_server_result.datetime_utc      '2024-11-28 08:52:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yar 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    8YAR 
#
_exptl.entry_id    8YAR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YAR 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YAR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 272 n n 
PG O2G GTP sing 273 n n 
PG O3G GTP sing 274 n n 
PG O3B GTP sing 275 n n 
O2G HOG2 GTP sing 276 n n 
O3G HOG3 GTP sing 277 n n 
O3B PB GTP sing 278 n n 
PB O1B GTP doub 279 n n 
PB O2B GTP sing 280 n n 
PB O3A GTP sing 281 n n 
O2B HOB2 GTP sing 282 n n 
O3A PA GTP sing 283 n n 
PA O1A GTP doub 284 n n 
PA O2A GTP sing 285 n n 
PA O5' GTP sing 286 n n 
O2A HOA2 GTP sing 287 n n 
O5' C5' GTP sing 288 n n 
C5' C4' GTP sing 289 n n 
C5' H5' GTP sing 290 n n 
C5' "H5''" GTP sing 291 n n 
C4' O4' GTP sing 292 n n 
C4' C3' GTP sing 293 n n 
C4' H4' GTP sing 294 n n 
O4' C1' GTP sing 295 n n 
C3' O3' GTP sing 296 n n 
C3' C2' GTP sing 297 n n 
C3' H3' GTP sing 298 n n 
O3' HO3' GTP sing 299 n n 
C2' O2' GTP sing 300 n n 
C2' C1' GTP sing 301 n n 
C2' H2' GTP sing 302 n n 
O2' HO2' GTP sing 303 n n 
C1' N9 GTP sing 304 n n 
C1' H1' GTP sing 305 n n 
N9 C8 GTP sing 306 n y 
N9 C4 GTP sing 307 n y 
C8 N7 GTP doub 308 n y 
C8 H8 GTP sing 309 n n 
N7 C5 GTP sing 310 n y 
C5 C6 GTP sing 311 n n 
C5 C4 GTP doub 312 n y 
C6 O6 GTP doub 313 n n 
C6 N1 GTP sing 314 n n 
N1 C2 GTP sing 315 n n 
N1 HN1 GTP sing 316 n n 
C2 N2 GTP sing 317 n n 
C2 N3 GTP doub 318 n n 
N2 HN21 GTP sing 319 n n 
N2 HN22 GTP sing 320 n n 
N3 C4 GTP sing 321 n n 
#
_atom_sites.entry_id                     8YAR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GTP B 1 501 501 GTP GTP . 
H 5 ACO C 1 301 201 ACO ACO . 
I 6 G2P D 1 501 501 G2P G2P . 
J 4 GTP E 1 501 501 GTP GTP . 
K 6 G2P F 1 501 501 G2P G2P . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . J 4 138.364 238.407 189.509 1 122.14 ? PG GTP 501 E 1 
HETATM 2 O O1G GTP . . . J 4 137.51 238.426 188.279 1 122.14 ? O1G GTP 501 E 1 
HETATM 3 O O2G GTP . . . J 4 138.971 237.062 189.776 1 122.14 ? O2G GTP 501 E 1 
HETATM 4 O O3G GTP . . . J 4 139.376 239.509 189.53 1 122.14 ? O3G GTP 501 E 1 
HETATM 5 O O3B GTP . . . J 4 137.366 238.716 190.713 1 122.14 ? O3B GTP 501 E 1 
HETATM 6 P PB GTP . . . J 4 136.297 239.895 190.776 1 122.14 ? PB GTP 501 E 1 
HETATM 7 O O1B GTP . . . J 4 135.426 239.814 189.572 1 122.14 ? O1B GTP 501 E 1 
HETATM 8 O O2B GTP . . . J 4 135.681 239.926 192.123 1 122.14 ? O2B GTP 501 E 1 
HETATM 9 O O3A GTP . . . J 4 137.249 241.166 190.663 1 122.14 ? O3A GTP 501 E 1 
HETATM 10 P PA GTP . . . J 4 138.106 241.957 191.754 1 122.14 ? PA GTP 501 E 1 
HETATM 11 O O1A GTP . . . J 4 137.448 241.826 193.08 1 122.14 ? O1A GTP 501 E 1 
HETATM 12 O O2A GTP . . . J 4 139.541 241.58 191.64 1 122.14 ? O2A GTP 501 E 1 
HETATM 13 O O5' GTP . . . J 4 137.889 243.439 191.198 1 122.14 ? O5' GTP 501 E 1 
HETATM 14 C C5' GTP . . . J 4 138.956 244.403 191.238 1 122.14 ? C5' GTP 501 E 1 
HETATM 15 C C4' GTP . . . J 4 138.875 245.168 192.53 1 122.14 ? C4' GTP 501 E 1 
HETATM 16 O O4' GTP . . . J 4 139.824 244.58 193.453 1 122.14 ? O4' GTP 501 E 1 
HETATM 17 C C3' GTP . . . J 4 139.276 246.643 192.44 1 122.14 ? C3' GTP 501 E 1 
HETATM 18 O O3' GTP . . . J 4 138.655 247.4 193.467 1 122.14 ? O3' GTP 501 E 1 
HETATM 19 C C2' GTP . . . J 4 140.779 246.55 192.683 1 122.14 ? C2' GTP 501 E 1 
HETATM 20 O O2' GTP . . . J 4 141.374 247.774 193.049 1 122.14 ? O2' GTP 501 E 1 
HETATM 21 C C1' GTP . . . J 4 140.777 245.546 193.824 1 122.14 ? C1' GTP 501 E 1 
HETATM 22 N N9 GTP . . . J 4 142.053 244.877 194.008 1 122.14 ? N9 GTP 501 E 1 
HETATM 23 C C8 GTP . . . J 4 142.577 243.885 193.223 1 122.14 ? C8 GTP 501 E 1 
HETATM 24 N N7 GTP . . . J 4 143.742 243.46 193.642 1 122.14 ? N7 GTP 501 E 1 
HETATM 25 C C5 GTP . . . J 4 143.984 244.204 194.785 1 122.14 ? C5 GTP 501 E 1 
HETATM 26 C C6 GTP . . . J 4 145.086 244.171 195.665 1 122.14 ? C6 GTP 501 E 1 
HETATM 27 O O6 GTP . . . J 4 146.092 243.456 195.606 1 122.14 ? O6 GTP 501 E 1 
HETATM 28 N N1 GTP . . . J 4 144.932 245.088 196.698 1 122.14 ? N1 GTP 501 E 1 
HETATM 29 C C2 GTP . . . J 4 143.861 245.925 196.865 1 122.14 ? C2 GTP 501 E 1 
HETATM 30 N N2 GTP . . . J 4 143.899 246.733 197.929 1 122.14 ? N2 GTP 501 E 1 
HETATM 31 N N3 GTP . . . J 4 142.822 245.965 196.036 1 122.14 ? N3 GTP 501 E 1 
HETATM 32 C C4 GTP . . . J 4 142.953 245.079 195.023 1 122.14 ? C4 GTP 501 E 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#