data_8YBH # _model_server_result.job_id bCJnw1P9KfLLzLVRwTVTVg _model_server_result.datetime_utc '2024-11-25 15:14:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ybh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8YBH # _exptl.entry_id 8YBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YBH _cell.length_a 77.21 _cell.length_b 77.21 _cell.length_c 37.949 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 24 1_555 A SG CYS 127 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 30 A CYS 48 1_555 A SG CYS 115 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 64 A CYS 82 1_555 A SG CYS 80 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 76 A CYS 94 1_555 A SG CYS 94 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 A O SER 60 A SER 78 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A O CYS 64 A CYS 82 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 A OG SER 72 A SER 90 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc4 A O ARG 73 A ARG 91 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc5 D NA NA . A NA 203 1_555 E O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc6 D NA NA . A NA 203 1_555 E O HOH . A HOH 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8YBH _atom_sites.fract_transf_matrix[1][1] 0.012952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 220 CL CL . C 2 CL A 1 202 221 CL CL . D 3 NA A 1 203 223 NA NA . E 4 HOH A 1 301 157 HOH HOH . E 4 HOH A 2 302 93 HOH HOH . E 4 HOH A 3 303 96 HOH HOH . E 4 HOH A 4 304 62 HOH HOH . E 4 HOH A 5 305 10 HOH HOH . E 4 HOH A 6 306 33 HOH HOH . E 4 HOH A 7 307 67 HOH HOH . E 4 HOH A 8 308 69 HOH HOH . E 4 HOH A 9 309 74 HOH HOH . E 4 HOH A 10 310 153 HOH HOH . E 4 HOH A 11 311 84 HOH HOH . E 4 HOH A 12 312 80 HOH HOH . E 4 HOH A 13 313 4 HOH HOH . E 4 HOH A 14 314 1 HOH HOH . E 4 HOH A 15 315 55 HOH HOH . E 4 HOH A 16 316 134 HOH HOH . E 4 HOH A 17 317 161 HOH HOH . E 4 HOH A 18 318 70 HOH HOH . E 4 HOH A 19 319 85 HOH HOH . E 4 HOH A 20 320 77 HOH HOH . E 4 HOH A 21 321 72 HOH HOH . E 4 HOH A 22 322 2 HOH HOH . E 4 HOH A 23 323 12 HOH HOH . E 4 HOH A 24 324 114 HOH HOH . E 4 HOH A 25 325 59 HOH HOH . E 4 HOH A 26 326 75 HOH HOH . E 4 HOH A 27 327 150 HOH HOH . E 4 HOH A 28 328 14 HOH HOH . E 4 HOH A 29 329 144 HOH HOH . E 4 HOH A 30 330 3 HOH HOH . E 4 HOH A 31 331 29 HOH HOH . E 4 HOH A 32 332 86 HOH HOH . E 4 HOH A 33 333 61 HOH HOH . E 4 HOH A 34 334 47 HOH HOH . E 4 HOH A 35 335 7 HOH HOH . E 4 HOH A 36 336 103 HOH HOH . E 4 HOH A 37 337 118 HOH HOH . E 4 HOH A 38 338 100 HOH HOH . E 4 HOH A 39 339 22 HOH HOH . E 4 HOH A 40 340 113 HOH HOH . E 4 HOH A 41 341 5 HOH HOH . E 4 HOH A 42 342 17 HOH HOH . E 4 HOH A 43 343 8 HOH HOH . E 4 HOH A 44 344 21 HOH HOH . E 4 HOH A 45 345 176 HOH HOH . E 4 HOH A 46 346 143 HOH HOH . E 4 HOH A 47 347 9 HOH HOH . E 4 HOH A 48 348 108 HOH HOH . E 4 HOH A 49 349 56 HOH HOH . E 4 HOH A 50 350 32 HOH HOH . E 4 HOH A 51 351 49 HOH HOH . E 4 HOH A 52 352 60 HOH HOH . E 4 HOH A 53 353 27 HOH HOH . E 4 HOH A 54 354 6 HOH HOH . E 4 HOH A 55 355 66 HOH HOH . E 4 HOH A 56 356 50 HOH HOH . E 4 HOH A 57 357 163 HOH HOH . E 4 HOH A 58 358 82 HOH HOH . E 4 HOH A 59 359 120 HOH HOH . E 4 HOH A 60 360 81 HOH HOH . E 4 HOH A 61 361 26 HOH HOH . E 4 HOH A 62 362 16 HOH HOH . E 4 HOH A 63 363 79 HOH HOH . E 4 HOH A 64 364 94 HOH HOH . E 4 HOH A 65 365 110 HOH HOH . E 4 HOH A 66 366 73 HOH HOH . E 4 HOH A 67 367 175 HOH HOH . E 4 HOH A 68 368 167 HOH HOH . E 4 HOH A 69 369 13 HOH HOH . E 4 HOH A 70 370 44 HOH HOH . E 4 HOH A 71 371 23 HOH HOH . E 4 HOH A 72 372 18 HOH HOH . E 4 HOH A 73 373 15 HOH HOH . E 4 HOH A 74 374 11 HOH HOH . E 4 HOH A 75 375 146 HOH HOH . E 4 HOH A 76 376 83 HOH HOH . E 4 HOH A 77 377 124 HOH HOH . E 4 HOH A 78 378 101 HOH HOH . E 4 HOH A 79 379 78 HOH HOH . E 4 HOH A 80 380 46 HOH HOH . E 4 HOH A 81 381 19 HOH HOH . E 4 HOH A 82 382 54 HOH HOH . E 4 HOH A 83 383 28 HOH HOH . E 4 HOH A 84 384 105 HOH HOH . E 4 HOH A 85 385 104 HOH HOH . E 4 HOH A 86 386 24 HOH HOH . E 4 HOH A 87 387 34 HOH HOH . E 4 HOH A 88 388 65 HOH HOH . E 4 HOH A 89 389 95 HOH HOH . E 4 HOH A 90 390 31 HOH HOH . E 4 HOH A 91 391 42 HOH HOH . E 4 HOH A 92 392 45 HOH HOH . E 4 HOH A 93 393 92 HOH HOH . E 4 HOH A 94 394 177 HOH HOH . E 4 HOH A 95 395 109 HOH HOH . E 4 HOH A 96 396 35 HOH HOH . E 4 HOH A 97 397 115 HOH HOH . E 4 HOH A 98 398 25 HOH HOH . E 4 HOH A 99 399 125 HOH HOH . E 4 HOH A 100 400 147 HOH HOH . E 4 HOH A 101 401 52 HOH HOH . E 4 HOH A 102 402 30 HOH HOH . E 4 HOH A 103 403 112 HOH HOH . E 4 HOH A 104 404 111 HOH HOH . E 4 HOH A 105 405 37 HOH HOH . E 4 HOH A 106 406 91 HOH HOH . E 4 HOH A 107 407 38 HOH HOH . E 4 HOH A 108 408 138 HOH HOH . E 4 HOH A 109 409 127 HOH HOH . E 4 HOH A 110 410 51 HOH HOH . E 4 HOH A 111 411 40 HOH HOH . E 4 HOH A 112 412 137 HOH HOH . E 4 HOH A 113 413 164 HOH HOH . E 4 HOH A 114 414 107 HOH HOH . E 4 HOH A 115 415 170 HOH HOH . E 4 HOH A 116 416 165 HOH HOH . E 4 HOH A 117 417 20 HOH HOH . E 4 HOH A 118 418 145 HOH HOH . E 4 HOH A 119 419 162 HOH HOH . E 4 HOH A 120 420 155 HOH HOH . E 4 HOH A 121 421 179 HOH HOH . E 4 HOH A 122 422 173 HOH HOH . E 4 HOH A 123 423 36 HOH HOH . E 4 HOH A 124 424 116 HOH HOH . E 4 HOH A 125 425 171 HOH HOH . E 4 HOH A 126 426 130 HOH HOH . E 4 HOH A 127 427 88 HOH HOH . E 4 HOH A 128 428 98 HOH HOH . E 4 HOH A 129 429 43 HOH HOH . E 4 HOH A 130 430 106 HOH HOH . E 4 HOH A 131 431 168 HOH HOH . E 4 HOH A 132 432 172 HOH HOH . E 4 HOH A 133 433 90 HOH HOH . E 4 HOH A 134 434 149 HOH HOH . E 4 HOH A 135 435 126 HOH HOH . E 4 HOH A 136 436 39 HOH HOH . E 4 HOH A 137 437 166 HOH HOH . E 4 HOH A 138 438 140 HOH HOH . E 4 HOH A 139 439 128 HOH HOH . E 4 HOH A 140 440 97 HOH HOH . E 4 HOH A 141 441 181 HOH HOH . E 4 HOH A 142 442 152 HOH HOH . E 4 HOH A 143 443 99 HOH HOH . E 4 HOH A 144 444 119 HOH HOH . E 4 HOH A 145 445 63 HOH HOH . E 4 HOH A 146 446 133 HOH HOH . E 4 HOH A 147 447 136 HOH HOH . E 4 HOH A 148 448 129 HOH HOH . E 4 HOH A 149 449 180 HOH HOH . E 4 HOH A 150 450 76 HOH HOH . E 4 HOH A 151 451 141 HOH HOH . E 4 HOH A 152 452 48 HOH HOH . E 4 HOH A 153 453 142 HOH HOH . E 4 HOH A 154 454 64 HOH HOH . E 4 HOH A 155 455 58 HOH HOH . E 4 HOH A 156 456 139 HOH HOH . E 4 HOH A 157 457 117 HOH HOH . E 4 HOH A 158 458 135 HOH HOH . E 4 HOH A 159 459 132 HOH HOH . E 4 HOH A 160 460 148 HOH HOH . E 4 HOH A 161 461 123 HOH HOH . E 4 HOH A 162 462 178 HOH HOH . E 4 HOH A 163 463 121 HOH HOH . E 4 HOH A 164 464 158 HOH HOH . E 4 HOH A 165 465 131 HOH HOH . E 4 HOH A 166 466 102 HOH HOH . E 4 HOH A 167 467 57 HOH HOH . E 4 HOH A 168 468 53 HOH HOH . E 4 HOH A 169 469 41 HOH HOH . E 4 HOH A 170 470 89 HOH HOH . E 4 HOH A 171 471 68 HOH HOH . E 4 HOH A 172 472 169 HOH HOH . E 4 HOH A 173 473 151 HOH HOH . E 4 HOH A 174 474 159 HOH HOH . E 4 HOH A 175 475 71 HOH HOH . E 4 HOH A 176 476 160 HOH HOH . E 4 HOH A 177 477 154 HOH HOH . E 4 HOH A 178 478 87 HOH HOH . E 4 HOH A 179 479 156 HOH HOH . E 4 HOH A 180 480 122 HOH HOH . E 4 HOH A 181 481 174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.199 _atom_site.Cartn_y 7.223 _atom_site.Cartn_z -12.815 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #