data_8YBQ # _model_server_result.job_id xQZ_Np-vZn-BywkORe4Bjg _model_server_result.datetime_utc '2025-07-16 14:22:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ybq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 8YBQ # _exptl.entry_id 8YBQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 104.171 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLINE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YBQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YBQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C5 H14 N O 1' _chem_comp.formula_weight 104.171 _chem_comp.id CHT _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLINE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 CHT sing 70 n n C4 O6 CHT sing 71 n n C4 HC41 CHT sing 72 n n C4 HC42 CHT sing 73 n n C5 N1 CHT sing 74 n n C5 HC51 CHT sing 75 n n C5 HC52 CHT sing 76 n n C6 N1 CHT sing 77 n n C6 H61 CHT sing 78 n n C6 H62 CHT sing 79 n n C6 H63 CHT sing 80 n n C7 N1 CHT sing 81 n n C7 H71 CHT sing 82 n n C7 H72 CHT sing 83 n n C7 H73 CHT sing 84 n n C8 N1 CHT sing 85 n n C8 H81 CHT sing 86 n n C8 H82 CHT sing 87 n n C8 H83 CHT sing 88 n n O6 HO6 CHT sing 89 n n # _atom_sites.entry_id 8YBQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CHT A 1 701 701 CHT CHT . E 2 CHT B 1 701 701 CHT CHT . F 2 CHT C 1 701 701 CHT CHT . G 3 HOH A 1 801 13 HOH HOH . G 3 HOH A 2 802 9 HOH HOH . G 3 HOH A 3 803 3 HOH HOH . G 3 HOH A 4 804 8 HOH HOH . G 3 HOH A 5 805 43 HOH HOH . G 3 HOH A 6 806 6 HOH HOH . G 3 HOH A 7 807 7 HOH HOH . G 3 HOH A 8 808 4 HOH HOH . G 3 HOH A 9 809 15 HOH HOH . G 3 HOH A 10 810 18 HOH HOH . G 3 HOH A 11 811 34 HOH HOH . G 3 HOH A 12 812 5 HOH HOH . G 3 HOH A 13 813 1 HOH HOH . G 3 HOH A 14 814 16 HOH HOH . G 3 HOH A 15 815 35 HOH HOH . G 3 HOH A 16 816 23 HOH HOH . G 3 HOH A 17 817 21 HOH HOH . G 3 HOH A 18 818 11 HOH HOH . G 3 HOH A 19 819 47 HOH HOH . G 3 HOH A 20 820 22 HOH HOH . G 3 HOH A 21 821 41 HOH HOH . G 3 HOH A 22 822 12 HOH HOH . G 3 HOH A 23 823 2 HOH HOH . G 3 HOH A 24 824 46 HOH HOH . H 3 HOH B 1 801 17 HOH HOH . H 3 HOH B 2 802 48 HOH HOH . H 3 HOH B 3 803 50 HOH HOH . H 3 HOH B 4 804 29 HOH HOH . H 3 HOH B 5 805 39 HOH HOH . H 3 HOH B 6 806 53 HOH HOH . H 3 HOH B 7 807 20 HOH HOH . H 3 HOH B 8 808 33 HOH HOH . H 3 HOH B 9 809 42 HOH HOH . H 3 HOH B 10 810 32 HOH HOH . H 3 HOH B 11 811 27 HOH HOH . H 3 HOH B 12 812 30 HOH HOH . H 3 HOH B 13 813 31 HOH HOH . H 3 HOH B 14 814 36 HOH HOH . H 3 HOH B 15 815 19 HOH HOH . H 3 HOH B 16 816 37 HOH HOH . H 3 HOH B 17 817 38 HOH HOH . H 3 HOH B 18 818 24 HOH HOH . H 3 HOH B 19 819 26 HOH HOH . H 3 HOH B 20 820 45 HOH HOH . H 3 HOH B 21 821 10 HOH HOH . H 3 HOH B 22 822 28 HOH HOH . H 3 HOH B 23 823 40 HOH HOH . H 3 HOH B 24 824 25 HOH HOH . H 3 HOH B 25 825 52 HOH HOH . H 3 HOH B 26 826 44 HOH HOH . H 3 HOH B 27 827 51 HOH HOH . I 3 HOH C 1 801 59 HOH HOH . I 3 HOH C 2 802 56 HOH HOH . I 3 HOH C 3 803 66 HOH HOH . I 3 HOH C 4 804 55 HOH HOH . I 3 HOH C 5 805 58 HOH HOH . I 3 HOH C 6 806 64 HOH HOH . I 3 HOH C 7 807 63 HOH HOH . I 3 HOH C 8 808 62 HOH HOH . I 3 HOH C 9 809 54 HOH HOH . I 3 HOH C 10 810 14 HOH HOH . I 3 HOH C 11 811 61 HOH HOH . I 3 HOH C 12 812 57 HOH HOH . I 3 HOH C 13 813 49 HOH HOH . I 3 HOH C 14 814 65 HOH HOH . I 3 HOH C 15 815 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 CHT . . . F 2 157.779 182.298 145.474 1 29.53 ? C4 CHT 701 C 1 HETATM 2 C C5 CHT . . . F 2 159.204 181.754 145.475 1 29.53 ? C5 CHT 701 C 1 HETATM 3 C C6 CHT . . . F 2 159.774 183.39 143.857 1 29.53 ? C6 CHT 701 C 1 HETATM 4 C C7 CHT . . . F 2 159.187 181.201 143.16 1 29.53 ? C7 CHT 701 C 1 HETATM 5 C C8 CHT . . . F 2 161.221 181.561 144.296 1 29.53 ? C8 CHT 701 C 1 HETATM 6 O O6 CHT . . . F 2 157.273 182.247 146.776 1 29.53 ? O6 CHT 701 C 1 HETATM 7 N N1 CHT . . . F 2 159.841 181.98 144.193 1 29.53 ? N1 CHT 701 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #