data_8YF1
#
_model_server_result.job_id            XxgA7DKAYZJerqVxj4wmMQ 
_model_server_result.datetime_utc      '2025-04-30 23:59:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yf1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    8YF1 
#
_exptl.entry_id    8YF1 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              212.289 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2-[(4R)-2-oxidanylidene-4-propyl-pyrrolidin-1-yl]butanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YF1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8YF1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
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_chem_comp.formula           'C11 H20 N2 O2' 
_chem_comp.formula_weight    212.289 
_chem_comp.id                VLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2-[(4R)-2-oxidanylidene-4-propyl-pyrrolidin-1-yl]butanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C9 VLX doub 374 n n 
C11 C8 VLX sing 375 n n 
C8 C5 VLX sing 376 n n 
C9 N2 VLX sing 377 n n 
C9 C5 VLX sing 378 n n 
C5 N1 VLX sing 379 n n 
C7 C10 VLX sing 380 n n 
C7 C4 VLX sing 381 n n 
C2 N1 VLX sing 382 n n 
C2 C1 VLX sing 383 n n 
N1 C6 VLX sing 384 n n 
C4 C1 VLX sing 385 n n 
C1 C3 VLX sing 386 n n 
C6 C3 VLX sing 387 n n 
C6 O1 VLX doub 388 n n 
C10 H1 VLX sing 389 n n 
C10 H2 VLX sing 390 n n 
C10 H3 VLX sing 391 n n 
C7 H4 VLX sing 392 n n 
C7 H5 VLX sing 393 n n 
C5 H6 VLX sing 394 n n 
C4 H7 VLX sing 395 n n 
C4 H8 VLX sing 396 n n 
C3 H9 VLX sing 397 n n 
C3 H10 VLX sing 398 n n 
C2 H11 VLX sing 399 n n 
C2 H12 VLX sing 400 n n 
C1 H13 VLX sing 401 n n 
C11 H14 VLX sing 402 n n 
C11 H15 VLX sing 403 n n 
C11 H16 VLX sing 404 n n 
C8 H17 VLX sing 405 n n 
C8 H18 VLX sing 406 n n 
N2 H19 VLX sing 407 n n 
N2 H20 VLX sing 408 n n 
#
_atom_sites.entry_id                     8YF1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VLX B 1 801 1 VLX BRI . 
D 2 VLX A 1 801 1 VLX BRI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 VLX . . . D 2 131.48 123.762 108.739 1 58.71 ? C10 VLX 801 A 1 
HETATM 2 C C7 VLX . . . D 2 132.105 123.317 110.054 1 58.71 ? C7 VLX 801 A 1 
HETATM 3 C C5 VLX . . . D 2 130.945 129.458 110.718 1 58.71 ? C5 VLX 801 A 1 
HETATM 4 C C4 VLX . . . D 2 131.959 124.414 111.135 1 58.71 ? C4 VLX 801 A 1 
HETATM 5 C C3 VLX . . . D 2 133.221 126.369 110.279 1 58.71 ? C3 VLX 801 A 1 
HETATM 6 C C2 VLX . . . D 2 131.123 126.882 111.314 1 58.71 ? C2 VLX 801 A 1 
HETATM 7 C C1 VLX . . . D 2 131.832 125.793 110.453 1 58.71 ? C1 VLX 801 A 1 
HETATM 8 C C6 VLX . . . D 2 132.934 127.782 110.058 1 58.71 ? C6 VLX 801 A 1 
HETATM 9 C C11 VLX . . . D 2 129.619 130.939 109.122 1 58.71 ? C11 VLX 801 A 1 
HETATM 10 C C8 VLX . . . D 2 129.788 129.519 109.688 1 58.71 ? C8 VLX 801 A 1 
HETATM 11 C C9 VLX . . . D 2 130.48 129.924 112.111 1 58.71 ? C9 VLX 801 A 1 
HETATM 12 N N1 VLX . . . D 2 131.608 128.113 110.718 1 58.71 ? N1 VLX 801 A 1 
HETATM 13 N N2 VLX . . . D 2 129.137 129.597 112.583 1 58.71 ? N2 VLX 801 A 1 
HETATM 14 O O1 VLX . . . D 2 133.641 128.513 109.458 1 58.71 ? O1 VLX 801 A 1 
HETATM 15 O O2 VLX . . . D 2 131.202 130.576 112.788 1 58.71 ? O2 VLX 801 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#