data_8YF4
#
_model_server_result.job_id            37TlDJvTRwdK9gwk70ZAMg 
_model_server_result.datetime_utc      '2024-12-22 09:16:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yf4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    8YF4 
#
_exptl.entry_id    8YF4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YF4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YF4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 189 A CYS 415 1_555 A SG CYS 214 A CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 189 B CYS 415 1_555 B SG CYS 214 B CYS 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 374 n n 
CBA CAB Y01 sing 375 n n 
CBA CAN Y01 sing 376 n n 
CAN CAJ Y01 sing 377 n n 
CAJ CAO Y01 sing 378 n n 
CAO CBB Y01 sing 379 n n 
CBB CAC Y01 sing 380 n n 
CBB CBE Y01 sing 381 n n 
CBE CAP Y01 sing 382 n n 
CBE CBI Y01 sing 383 n n 
CAP CAQ Y01 sing 384 n n 
CAQ CBG Y01 sing 385 n n 
CBG CBI Y01 sing 386 n n 
CBG CBD Y01 sing 387 n n 
CBI CAE Y01 sing 388 n n 
CBI CAU Y01 sing 389 n n 
CAU CAS Y01 sing 390 n n 
CAS CBF Y01 sing 391 n n 
CBF CBD Y01 sing 392 n n 
CBF CBH Y01 sing 393 n n 
CBD CAK Y01 sing 394 n n 
CAK CAI Y01 sing 395 n n 
CAI CAZ Y01 doub 396 n n 
CAZ CAV Y01 sing 397 n n 
CAZ CBH Y01 sing 398 n n 
CAV CBC Y01 sing 399 n n 
CBH CAD Y01 sing 400 n n 
CBH CAT Y01 sing 401 n n 
CAT CAR Y01 sing 402 n n 
CAR CBC Y01 sing 403 n n 
CBC OAW Y01 sing 404 n n 
OAW CAY Y01 sing 405 n n 
CAY OAG Y01 doub 406 n n 
CAY CAM Y01 sing 407 n n 
CAM CAL Y01 sing 408 n n 
CAL CAX Y01 sing 409 n n 
CAX OAH Y01 sing 410 n n 
CAX OAF Y01 doub 411 n n 
CAA HAA1 Y01 sing 412 n n 
CAA HAA2 Y01 sing 413 n n 
CAA HAA3 Y01 sing 414 n n 
CBA HBA Y01 sing 415 n n 
CAB HAB1 Y01 sing 416 n n 
CAB HAB2 Y01 sing 417 n n 
CAB HAB3 Y01 sing 418 n n 
CAN HAN1 Y01 sing 419 n n 
CAN HAN2 Y01 sing 420 n n 
CAJ HAJ1 Y01 sing 421 n n 
CAJ HAJ2 Y01 sing 422 n n 
CAO HAO1 Y01 sing 423 n n 
CAO HAO2 Y01 sing 424 n n 
CBB HBB Y01 sing 425 n n 
CAC HAC1 Y01 sing 426 n n 
CAC HAC2 Y01 sing 427 n n 
CAC HAC3 Y01 sing 428 n n 
CBE HBE Y01 sing 429 n n 
CAP HAP1 Y01 sing 430 n n 
CAP HAP2 Y01 sing 431 n n 
CAQ HAQ1 Y01 sing 432 n n 
CAQ HAQ2 Y01 sing 433 n n 
CBG HBG Y01 sing 434 n n 
CBD HBD Y01 sing 435 n n 
CAE HAE1 Y01 sing 436 n n 
CAE HAE2 Y01 sing 437 n n 
CAE HAE3 Y01 sing 438 n n 
CAU HAU1 Y01 sing 439 n n 
CAU HAU2 Y01 sing 440 n n 
CAS HAS1 Y01 sing 441 n n 
CAS HAS2 Y01 sing 442 n n 
CBF HBF Y01 sing 443 n n 
CAK HAK1 Y01 sing 444 n n 
CAK HAK2 Y01 sing 445 n n 
CAI HAI Y01 sing 446 n n 
CAV HAV1 Y01 sing 447 n n 
CAV HAV2 Y01 sing 448 n n 
CBC HBC Y01 sing 449 n n 
CAD HAD1 Y01 sing 450 n n 
CAD HAD2 Y01 sing 451 n n 
CAD HAD3 Y01 sing 452 n n 
CAT HAT1 Y01 sing 453 n n 
CAT HAT2 Y01 sing 454 n n 
CAR HAR1 Y01 sing 455 n n 
CAR HAR2 Y01 sing 456 n n 
CAM HAM1 Y01 sing 457 n n 
CAM HAM2 Y01 sing 458 n n 
CAL HAL1 Y01 sing 459 n n 
CAL HAL2 Y01 sing 460 n n 
OAH HAH Y01 sing 461 n n 
#
_atom_sites.entry_id                     8YF4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 701 701 Y01 Y01 . 
D 2 Y01 B 1 701 701 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . D 2 143.657 124.297 113.03 1 33.79 ? CAA Y01 701 B 1 
HETATM 2 C CBA Y01 . . . D 2 144.009 125.255 114.164 1 36.53 ? CBA Y01 701 B 1 
HETATM 3 C CAB Y01 . . . D 2 143.113 126.489 114.118 1 31.52 ? CAB Y01 701 B 1 
HETATM 4 C CAN Y01 . . . D 2 145.479 125.674 114.128 1 35.64 ? CAN Y01 701 B 1 
HETATM 5 C CAJ Y01 . . . D 2 145.911 126.612 115.247 1 30.06 ? CAJ Y01 701 B 1 
HETATM 6 C CAO Y01 . . . D 2 147.397 126.949 115.163 1 29.73 ? CAO Y01 701 B 1 
HETATM 7 C CBB Y01 . . . D 2 147.98 127.692 116.373 1 31.24 ? CBB Y01 701 B 1 
HETATM 8 C CAC Y01 . . . D 2 147.28 127.242 117.653 1 28 ? CAC Y01 701 B 1 
HETATM 9 C CBE Y01 . . . D 2 149.505 127.513 116.4 1 29.85 ? CBE Y01 701 B 1 
HETATM 10 C CAP Y01 . . . D 2 150.114 127.672 114.978 1 30.16 ? CAP Y01 701 B 1 
HETATM 11 C CAQ Y01 . . . D 2 151.453 128.414 115.132 1 34.11 ? CAQ Y01 701 B 1 
HETATM 12 C CBG Y01 . . . D 2 151.748 128.253 116.614 1 29.49 ? CBG Y01 701 B 1 
HETATM 13 C CBI Y01 . . . D 2 150.38 128.438 117.29 1 32.02 ? CBI Y01 701 B 1 
HETATM 14 C CAE Y01 . . . D 2 149.885 129.884 117.196 1 29.75 ? CAE Y01 701 B 1 
HETATM 15 C CAU Y01 . . . D 2 150.567 128.009 118.748 1 34.26 ? CAU Y01 701 B 1 
HETATM 16 C CAS Y01 . . . D 2 151.71 128.759 119.436 1 30.41 ? CAS Y01 701 B 1 
HETATM 17 C CBF Y01 . . . D 2 153.047 128.654 118.696 1 27.6 ? CBF Y01 701 B 1 
HETATM 18 C CBD Y01 . . . D 2 152.888 129.052 117.222 1 30.31 ? CBD Y01 701 B 1 
HETATM 19 C CAK Y01 . . . D 2 154.178 128.784 116.458 1 28.15 ? CAK Y01 701 B 1 
HETATM 20 C CAI Y01 . . . D 2 155.397 129.177 117.219 1 30.34 ? CAI Y01 701 B 1 
HETATM 21 C CAZ Y01 . . . D 2 155.413 129.514 118.506 1 32.97 ? CAZ Y01 701 B 1 
HETATM 22 C CAV Y01 . . . D 2 156.701 129.974 119.138 1 35.15 ? CAV Y01 701 B 1 
HETATM 23 C CBH Y01 . . . D 2 154.197 129.408 119.41 1 31.41 ? CBH Y01 701 B 1 
HETATM 24 C CAD Y01 . . . D 2 153.765 130.815 119.845 1 34.56 ? CAD Y01 701 B 1 
HETATM 25 C CAT Y01 . . . D 2 154.625 128.611 120.658 1 33.59 ? CAT Y01 701 B 1 
HETATM 26 C CAR Y01 . . . D 2 155.854 129.182 121.354 1 32.83 ? CAR Y01 701 B 1 
HETATM 27 C CBC Y01 . . . D 2 157.034 129.196 120.404 1 29.53 ? CBC Y01 701 B 1 
HETATM 28 O OAW Y01 . . . D 2 158.123 129.827 121.093 1 31.04 ? OAW Y01 701 B 1 
HETATM 29 C CAY Y01 . . . D 2 158.956 129.096 121.83 1 38.35 ? CAY Y01 701 B 1 
HETATM 30 O OAG Y01 . . . D 2 158.881 129.017 123.031 1 44.15 ? OAG Y01 701 B 1 
HETATM 31 C CAM Y01 . . . D 2 159.982 128.407 120.972 1 35.52 ? CAM Y01 701 B 1 
HETATM 32 C CAL Y01 . . . D 2 161.414 128.716 121.366 1 34.02 ? CAL Y01 701 B 1 
HETATM 33 C CAX Y01 . . . D 2 162.04 127.738 122.379 1 39.69 ? CAX Y01 701 B 1 
HETATM 34 O OAH Y01 . . . D 2 161.38 127.537 123.418 1 43.16 ? OAH Y01 701 B 1 
HETATM 35 O OAF Y01 . . . D 2 163.143 127.23 122.093 1 37.12 ? OAF Y01 701 B 1 
#
_model_server_stats.io_time_ms              102 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#