data_8YFZ # _model_server_result.job_id tOfqfaOgSFuuutGqtqQvoA _model_server_result.datetime_utc '2024-11-22 13:57:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8YFZ # _exptl.entry_id 8YFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YFZ _cell.length_a 58.522 _cell.length_b 71.672 _cell.length_c 136.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8YFZ _atom_sites.fract_transf_matrix[1][1] 0.017088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 401 9999 BOG BOG . C 3 HOH A 1 501 123 HOH HOH . C 3 HOH A 2 502 172 HOH HOH . C 3 HOH A 3 503 4 HOH HOH . C 3 HOH A 4 504 184 HOH HOH . C 3 HOH A 5 505 89 HOH HOH . C 3 HOH A 6 506 64 HOH HOH . C 3 HOH A 7 507 204 HOH HOH . C 3 HOH A 8 508 56 HOH HOH . C 3 HOH A 9 509 66 HOH HOH . C 3 HOH A 10 510 98 HOH HOH . C 3 HOH A 11 511 125 HOH HOH . C 3 HOH A 12 512 69 HOH HOH . C 3 HOH A 13 513 166 HOH HOH . C 3 HOH A 14 514 33 HOH HOH . C 3 HOH A 15 515 94 HOH HOH . C 3 HOH A 16 516 136 HOH HOH . C 3 HOH A 17 517 193 HOH HOH . C 3 HOH A 18 518 169 HOH HOH . C 3 HOH A 19 519 2 HOH HOH . C 3 HOH A 20 520 178 HOH HOH . C 3 HOH A 21 521 67 HOH HOH . C 3 HOH A 22 522 147 HOH HOH . C 3 HOH A 23 523 129 HOH HOH . C 3 HOH A 24 524 81 HOH HOH . C 3 HOH A 25 525 156 HOH HOH . C 3 HOH A 26 526 51 HOH HOH . C 3 HOH A 27 527 11 HOH HOH . C 3 HOH A 28 528 200 HOH HOH . C 3 HOH A 29 529 198 HOH HOH . C 3 HOH A 30 530 199 HOH HOH . C 3 HOH A 31 531 105 HOH HOH . C 3 HOH A 32 532 16 HOH HOH . C 3 HOH A 33 533 12 HOH HOH . C 3 HOH A 34 534 26 HOH HOH . C 3 HOH A 35 535 91 HOH HOH . C 3 HOH A 36 536 79 HOH HOH . C 3 HOH A 37 537 144 HOH HOH . C 3 HOH A 38 538 90 HOH HOH . C 3 HOH A 39 539 54 HOH HOH . C 3 HOH A 40 540 189 HOH HOH . C 3 HOH A 41 541 196 HOH HOH . C 3 HOH A 42 542 83 HOH HOH . C 3 HOH A 43 543 99 HOH HOH . C 3 HOH A 44 544 209 HOH HOH . C 3 HOH A 45 545 212 HOH HOH . C 3 HOH A 46 546 24 HOH HOH . C 3 HOH A 47 547 181 HOH HOH . C 3 HOH A 48 548 32 HOH HOH . C 3 HOH A 49 549 17 HOH HOH . C 3 HOH A 50 550 14 HOH HOH . C 3 HOH A 51 551 84 HOH HOH . C 3 HOH A 52 552 150 HOH HOH . C 3 HOH A 53 553 43 HOH HOH . C 3 HOH A 54 554 34 HOH HOH . C 3 HOH A 55 555 127 HOH HOH . C 3 HOH A 56 556 38 HOH HOH . C 3 HOH A 57 557 207 HOH HOH . C 3 HOH A 58 558 1 HOH HOH . C 3 HOH A 59 559 3 HOH HOH . C 3 HOH A 60 560 180 HOH HOH . C 3 HOH A 61 561 96 HOH HOH . C 3 HOH A 62 562 62 HOH HOH . C 3 HOH A 63 563 115 HOH HOH . C 3 HOH A 64 564 118 HOH HOH . C 3 HOH A 65 565 39 HOH HOH . C 3 HOH A 66 566 205 HOH HOH . C 3 HOH A 67 567 48 HOH HOH . C 3 HOH A 68 568 78 HOH HOH . C 3 HOH A 69 569 165 HOH HOH . C 3 HOH A 70 570 31 HOH HOH . C 3 HOH A 71 571 6 HOH HOH . C 3 HOH A 72 572 63 HOH HOH . C 3 HOH A 73 573 74 HOH HOH . C 3 HOH A 74 574 46 HOH HOH . C 3 HOH A 75 575 195 HOH HOH . C 3 HOH A 76 576 53 HOH HOH . C 3 HOH A 77 577 23 HOH HOH . C 3 HOH A 78 578 93 HOH HOH . C 3 HOH A 79 579 138 HOH HOH . C 3 HOH A 80 580 143 HOH HOH . C 3 HOH A 81 581 109 HOH HOH . C 3 HOH A 82 582 44 HOH HOH . C 3 HOH A 83 583 183 HOH HOH . C 3 HOH A 84 584 19 HOH HOH . C 3 HOH A 85 585 42 HOH HOH . C 3 HOH A 86 586 52 HOH HOH . C 3 HOH A 87 587 154 HOH HOH . C 3 HOH A 88 588 163 HOH HOH . C 3 HOH A 89 589 22 HOH HOH . C 3 HOH A 90 590 9 HOH HOH . C 3 HOH A 91 591 72 HOH HOH . C 3 HOH A 92 592 21 HOH HOH . C 3 HOH A 93 593 124 HOH HOH . C 3 HOH A 94 594 159 HOH HOH . C 3 HOH A 95 595 5 HOH HOH . C 3 HOH A 96 596 130 HOH HOH . C 3 HOH A 97 597 133 HOH HOH . C 3 HOH A 98 598 27 HOH HOH . C 3 HOH A 99 599 80 HOH HOH . C 3 HOH A 100 600 36 HOH HOH . C 3 HOH A 101 601 151 HOH HOH . C 3 HOH A 102 602 119 HOH HOH . C 3 HOH A 103 603 177 HOH HOH . C 3 HOH A 104 604 10 HOH HOH . C 3 HOH A 105 605 8 HOH HOH . C 3 HOH A 106 606 30 HOH HOH . C 3 HOH A 107 607 208 HOH HOH . C 3 HOH A 108 608 122 HOH HOH . C 3 HOH A 109 609 104 HOH HOH . C 3 HOH A 110 610 86 HOH HOH . C 3 HOH A 111 611 29 HOH HOH . C 3 HOH A 112 612 7 HOH HOH . C 3 HOH A 113 613 20 HOH HOH . C 3 HOH A 114 614 82 HOH HOH . C 3 HOH A 115 615 65 HOH HOH . C 3 HOH A 116 616 134 HOH HOH . C 3 HOH A 117 617 59 HOH HOH . C 3 HOH A 118 618 13 HOH HOH . C 3 HOH A 119 619 15 HOH HOH . C 3 HOH A 120 620 176 HOH HOH . C 3 HOH A 121 621 131 HOH HOH . C 3 HOH A 122 622 75 HOH HOH . C 3 HOH A 123 623 126 HOH HOH . C 3 HOH A 124 624 145 HOH HOH . C 3 HOH A 125 625 211 HOH HOH . C 3 HOH A 126 626 101 HOH HOH . C 3 HOH A 127 627 37 HOH HOH . C 3 HOH A 128 628 157 HOH HOH . C 3 HOH A 129 629 47 HOH HOH . C 3 HOH A 130 630 95 HOH HOH . C 3 HOH A 131 631 120 HOH HOH . C 3 HOH A 132 632 191 HOH HOH . C 3 HOH A 133 633 107 HOH HOH . C 3 HOH A 134 634 121 HOH HOH . C 3 HOH A 135 635 71 HOH HOH . C 3 HOH A 136 636 185 HOH HOH . C 3 HOH A 137 637 87 HOH HOH . C 3 HOH A 138 638 60 HOH HOH . C 3 HOH A 139 639 73 HOH HOH . C 3 HOH A 140 640 28 HOH HOH . C 3 HOH A 141 641 85 HOH HOH . C 3 HOH A 142 642 140 HOH HOH . C 3 HOH A 143 643 111 HOH HOH . C 3 HOH A 144 644 88 HOH HOH . C 3 HOH A 145 645 113 HOH HOH . C 3 HOH A 146 646 77 HOH HOH . C 3 HOH A 147 647 45 HOH HOH . C 3 HOH A 148 648 70 HOH HOH . C 3 HOH A 149 649 41 HOH HOH . C 3 HOH A 150 650 35 HOH HOH . C 3 HOH A 151 651 58 HOH HOH . C 3 HOH A 152 652 40 HOH HOH . C 3 HOH A 153 653 148 HOH HOH . C 3 HOH A 154 654 114 HOH HOH . C 3 HOH A 155 655 92 HOH HOH . C 3 HOH A 156 656 97 HOH HOH . C 3 HOH A 157 657 68 HOH HOH . C 3 HOH A 158 658 153 HOH HOH . C 3 HOH A 159 659 76 HOH HOH . C 3 HOH A 160 660 102 HOH HOH . C 3 HOH A 161 661 108 HOH HOH . C 3 HOH A 162 662 50 HOH HOH . C 3 HOH A 163 663 110 HOH HOH . C 3 HOH A 164 664 186 HOH HOH . C 3 HOH A 165 665 168 HOH HOH . C 3 HOH A 166 666 57 HOH HOH . C 3 HOH A 167 667 18 HOH HOH . C 3 HOH A 168 668 100 HOH HOH . C 3 HOH A 169 669 116 HOH HOH . C 3 HOH A 170 670 161 HOH HOH . C 3 HOH A 171 671 160 HOH HOH . C 3 HOH A 172 672 149 HOH HOH . C 3 HOH A 173 673 61 HOH HOH . C 3 HOH A 174 674 55 HOH HOH . C 3 HOH A 175 675 139 HOH HOH . C 3 HOH A 176 676 188 HOH HOH . C 3 HOH A 177 677 155 HOH HOH . C 3 HOH A 178 678 201 HOH HOH . C 3 HOH A 179 679 164 HOH HOH . C 3 HOH A 180 680 103 HOH HOH . C 3 HOH A 181 681 146 HOH HOH . C 3 HOH A 182 682 210 HOH HOH . C 3 HOH A 183 683 128 HOH HOH . C 3 HOH A 184 684 142 HOH HOH . C 3 HOH A 185 685 167 HOH HOH . C 3 HOH A 186 686 158 HOH HOH . C 3 HOH A 187 687 190 HOH HOH . C 3 HOH A 188 688 132 HOH HOH . C 3 HOH A 189 689 202 HOH HOH . C 3 HOH A 190 690 173 HOH HOH . C 3 HOH A 191 691 152 HOH HOH . C 3 HOH A 192 692 106 HOH HOH . C 3 HOH A 193 693 187 HOH HOH . C 3 HOH A 194 694 175 HOH HOH . C 3 HOH A 195 695 162 HOH HOH . C 3 HOH A 196 696 141 HOH HOH . C 3 HOH A 197 697 112 HOH HOH . C 3 HOH A 198 698 117 HOH HOH . C 3 HOH A 199 699 174 HOH HOH . C 3 HOH A 200 700 171 HOH HOH . C 3 HOH A 201 701 197 HOH HOH . C 3 HOH A 202 702 192 HOH HOH . C 3 HOH A 203 703 49 HOH HOH . C 3 HOH A 204 704 135 HOH HOH . C 3 HOH A 205 705 137 HOH HOH . C 3 HOH A 206 706 206 HOH HOH . C 3 HOH A 207 707 182 HOH HOH . C 3 HOH A 208 708 179 HOH HOH . C 3 HOH A 209 709 203 HOH HOH . C 3 HOH A 210 710 25 HOH HOH . C 3 HOH A 211 711 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 8.994 12.161 2.685 1 51.96 ? C1 BOG 401 A 1 HETATM 2 O O1 BOG . . . B 2 8.973 12.86 3.938 1 49.71 ? O1 BOG 401 A 1 HETATM 3 C C2 BOG . . . B 2 10.377 12.349 2.067 1 52.51 ? C2 BOG 401 A 1 HETATM 4 O O2 BOG . . . B 2 10.232 13.321 1.04 1 51.95 ? O2 BOG 401 A 1 HETATM 5 C C3 BOG . . . B 2 11.111 11.136 1.495 1 53.53 ? C3 BOG 401 A 1 HETATM 6 O O3 BOG . . . B 2 12.37 11.075 2.162 1 53.84 ? O3 BOG 401 A 1 HETATM 7 C C4 BOG . . . B 2 10.465 9.75 1.622 1 53.9 ? C4 BOG 401 A 1 HETATM 8 O O4 BOG . . . B 2 10.38 9.149 0.333 1 54.57 ? O4 BOG 401 A 1 HETATM 9 C C5 BOG . . . B 2 9.07 9.637 2.253 1 53.72 ? C5 BOG 401 A 1 HETATM 10 O O5 BOG . . . B 2 8.48 10.827 2.814 1 53.17 ? O5 BOG 401 A 1 HETATM 11 C C6 BOG . . . B 2 8.987 8.45 3.227 1 53.95 ? C6 BOG 401 A 1 HETATM 12 O O6 BOG . . . B 2 10.204 8.227 3.924 1 54.24 ? O6 BOG 401 A 1 HETATM 13 C C1' BOG . . . B 2 7.661 13.252 4.352 1 47.52 ? C1' BOG 401 A 1 HETATM 14 C C2' BOG . . . B 2 7.729 14.579 5.1 1 45.9 ? C2' BOG 401 A 1 HETATM 15 C C3' BOG . . . B 2 8.572 14.453 6.361 1 44.62 ? C3' BOG 401 A 1 HETATM 16 C C4' BOG . . . B 2 8.209 15.558 7.342 1 43.55 ? C4' BOG 401 A 1 HETATM 17 C C5' BOG . . . B 2 9.255 15.717 8.438 1 42.37 ? C5' BOG 401 A 1 HETATM 18 C C6' BOG . . . B 2 8.8 16.823 9.38 1 41.85 ? C6' BOG 401 A 1 HETATM 19 C C7' BOG . . . B 2 9.88 17.198 10.385 1 41.47 ? C7' BOG 401 A 1 HETATM 20 C C8' BOG . . . B 2 10.054 18.696 10.521 1 41.29 ? C8' BOG 401 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #