data_8YGW # _model_server_result.job_id JtYIsdDUQkfH4iG2F-ZWxA _model_server_result.datetime_utc '2025-02-17 19:01:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ygw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8YGW # _exptl.entry_id 8YGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.657 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YGW _cell.length_a 39.061 _cell.length_b 61.86 _cell.length_c 147.437 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H37 N5 O3' _chem_comp.formula_weight 527.657 _chem_comp.id B96 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 B96 doub 70 n n C1 N2 B96 sing 71 n n C1 N9 B96 sing 72 n n N2 C3 B96 sing 73 n n N2 H2 B96 sing 74 n n C3 C4 B96 doub 75 n y C3 C8 B96 sing 76 n y C4 C5 B96 sing 77 n y C4 C31 B96 sing 78 n y C5 C6 B96 doub 79 n y C5 C34 B96 sing 80 n y C6 C7 B96 sing 81 n y C6 O41 B96 sing 82 n n C31 C32 B96 doub 83 n y C31 H31 B96 sing 84 n n C32 C33 B96 sing 85 n y C32 H32 B96 sing 86 n n C33 C34 B96 doub 87 n y C33 H33 B96 sing 88 n n C34 H34 B96 sing 89 n n C7 C8 B96 doub 90 n y C7 H7 B96 sing 91 n n C8 H8 B96 sing 92 n n N9 C10 B96 sing 93 n n N9 H9 B96 sing 94 n n C10 C14 B96 doub 95 n y C10 N11 B96 sing 96 n y C14 C13 B96 sing 97 n y C14 H14 B96 sing 98 n n C13 N12 B96 doub 99 n y C13 C16 B96 sing 100 n n N12 N11 B96 sing 101 n y N11 C15 B96 sing 102 n y C15 C20 B96 doub 103 n y C15 C24 B96 sing 104 n y C17 C16 B96 sing 105 n n C17 H171 B96 sing 106 n n C17 H172 B96 sing 107 n n C17 H173 B96 sing 108 n n C18 C16 B96 sing 109 n n C18 H181 B96 sing 110 n n C18 H182 B96 sing 111 n n C18 H183 B96 sing 112 n n C19 C16 B96 sing 113 n n C19 H191 B96 sing 114 n n C19 H192 B96 sing 115 n n C19 H193 B96 sing 116 n n C20 C21 B96 sing 117 n y C20 H20 B96 sing 118 n n C21 C22 B96 doub 119 n y C21 H21 B96 sing 120 n n C22 C23 B96 sing 121 n y C22 C25 B96 sing 122 n n C23 C24 B96 doub 123 n y C23 H23 B96 sing 124 n n C24 H24 B96 sing 125 n n C25 H251 B96 sing 126 n n C25 H252 B96 sing 127 n n C25 H253 B96 sing 128 n n O41 C42 B96 sing 129 n n C42 C43 B96 sing 130 n n C42 H421 B96 sing 131 n n C42 H422 B96 sing 132 n n C43 N44 B96 sing 133 n n C43 H431 B96 sing 134 n n C43 H432 B96 sing 135 n n N44 C45 B96 sing 136 n n N44 C49 B96 sing 137 n n C45 C46 B96 sing 138 n n C45 H451 B96 sing 139 n n C45 H452 B96 sing 140 n n C46 O47 B96 sing 141 n n C46 H461 B96 sing 142 n n C46 H462 B96 sing 143 n n O47 C48 B96 sing 144 n n C48 C49 B96 sing 145 n n C48 H481 B96 sing 146 n n C48 H482 B96 sing 147 n n C49 H491 B96 sing 148 n n C49 H492 B96 sing 149 n n # _atom_sites.entry_id 8YGW _atom_sites.fract_transf_matrix[1][1] 0.025601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B96 A 1 401 1 B96 574 . C 3 HOH A 1 501 22 HOH HOH . C 3 HOH A 2 502 5 HOH HOH . C 3 HOH A 3 503 14 HOH HOH . C 3 HOH A 4 504 2 HOH HOH . C 3 HOH A 5 505 18 HOH HOH . C 3 HOH A 6 506 21 HOH HOH . C 3 HOH A 7 507 20 HOH HOH . C 3 HOH A 8 508 12 HOH HOH . C 3 HOH A 9 509 19 HOH HOH . C 3 HOH A 10 510 4 HOH HOH . C 3 HOH A 11 511 3 HOH HOH . C 3 HOH A 12 512 17 HOH HOH . C 3 HOH A 13 513 15 HOH HOH . C 3 HOH A 14 514 11 HOH HOH . C 3 HOH A 15 515 1 HOH HOH . C 3 HOH A 16 516 9 HOH HOH . C 3 HOH A 17 517 24 HOH HOH . C 3 HOH A 18 518 8 HOH HOH . C 3 HOH A 19 519 16 HOH HOH . C 3 HOH A 20 520 13 HOH HOH . C 3 HOH A 21 521 23 HOH HOH . C 3 HOH A 22 522 10 HOH HOH . C 3 HOH A 23 523 25 HOH HOH . C 3 HOH A 24 524 26 HOH HOH . C 3 HOH A 25 525 6 HOH HOH . C 3 HOH A 26 526 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B96 . . . B 2 18.9 60.951 23.52 1 53.77 0 C1 B96 401 A 1 HETATM 2 O O1 B96 . . . B 2 19.824 61.413 22.863 1 53.34 0 O1 B96 401 A 1 HETATM 3 N N2 B96 . . . B 2 18.317 61.61 24.552 1 53.68 0 N2 B96 401 A 1 HETATM 4 C C3 B96 . . . B 2 18.506 62.996 24.763 1 54.55 0 C3 B96 401 A 1 HETATM 5 C C4 B96 . . . B 2 18.946 63.444 26.044 1 55.35 0 C4 B96 401 A 1 HETATM 6 C C5 B96 . . . B 2 19.151 64.837 26.249 1 55.47 0 C5 B96 401 A 1 HETATM 7 C C6 B96 . . . B 2 18.917 65.731 25.16 1 55.07 0 C6 B96 401 A 1 HETATM 8 C C31 B96 . . . B 2 19.177 62.56 27.129 1 54.86 0 C31 B96 401 A 1 HETATM 9 C C32 B96 . . . B 2 19.586 63.034 28.344 1 55.85 0 C32 B96 401 A 1 HETATM 10 C C33 B96 . . . B 2 19.793 64.411 28.546 1 55.92 0 C33 B96 401 A 1 HETATM 11 C C34 B96 . . . B 2 19.582 65.303 27.529 1 55.14 0 C34 B96 401 A 1 HETATM 12 C C7 B96 . . . B 2 18.508 65.259 23.943 1 55.04 0 C7 B96 401 A 1 HETATM 13 C C8 B96 . . . B 2 18.304 63.885 23.742 1 55.2 0 C8 B96 401 A 1 HETATM 14 N N9 B96 . . . B 2 18.368 59.718 23.236 1 54.09 0 N9 B96 401 A 1 HETATM 15 C C10 B96 . . . B 2 18.782 58.953 22.152 1 53.95 0 C10 B96 401 A 1 HETATM 16 C C14 B96 . . . B 2 19.998 58.812 21.532 1 53.78 0 C14 B96 401 A 1 HETATM 17 C C13 B96 . . . B 2 19.784 57.899 20.484 1 52.59 0 C13 B96 401 A 1 HETATM 18 N N12 B96 . . . B 2 18.521 57.494 20.444 1 53.33 0 N12 B96 401 A 1 HETATM 19 N N11 B96 . . . B 2 17.905 58.157 21.483 1 54.23 0 N11 B96 401 A 1 HETATM 20 C C15 B96 . . . B 2 16.52 57.929 21.721 1 55.33 0 C15 B96 401 A 1 HETATM 21 C C17 B96 . . . B 2 20.26 57.563 18.064 1 52.62 0 C17 B96 401 A 1 HETATM 22 C C18 B96 . . . B 2 21.063 55.903 19.74 1 53.09 0 C18 B96 401 A 1 HETATM 23 C C19 B96 . . . B 2 22.113 58.152 19.624 1 51.45 0 C19 B96 401 A 1 HETATM 24 C C16 B96 . . . B 2 20.796 57.385 19.485 1 51.97 0 C16 B96 401 A 1 HETATM 25 C C20 B96 . . . B 2 16.04 56.635 21.773 1 56.08 0 C20 B96 401 A 1 HETATM 26 C C21 B96 . . . B 2 14.694 56.423 22.014 1 56.21 0 C21 B96 401 A 1 HETATM 27 C C22 B96 . . . B 2 13.819 57.479 22.208 1 57.77 0 C22 B96 401 A 1 HETATM 28 C C23 B96 . . . B 2 14.33 58.766 22.157 1 57.53 0 C23 B96 401 A 1 HETATM 29 C C24 B96 . . . B 2 15.672 59.002 21.917 1 56.75 0 C24 B96 401 A 1 HETATM 30 C C25 B96 . . . B 2 12.357 57.238 22.47 1 58.82 0 C25 B96 401 A 1 HETATM 31 O O41 B96 . . . B 2 19.139 67.033 25.441 1 56.62 0 O41 B96 401 A 1 HETATM 32 C C42 B96 . . . B 2 19.59 67.89 24.378 1 57.72 0 C42 B96 401 A 1 HETATM 33 C C43 B96 . . . B 2 19.921 69.248 24.939 1 57.94 0 C43 B96 401 A 1 HETATM 34 N N44 B96 . . . B 2 21.351 69.52 25.146 1 59.27 0 N44 B96 401 A 1 HETATM 35 C C45 B96 . . . B 2 22.101 69.68 23.896 1 59.99 0 C45 B96 401 A 1 HETATM 36 C C46 B96 . . . B 2 23.52 70.082 24.209 1 60.93 0 C46 B96 401 A 1 HETATM 37 O O47 B96 . . . B 2 24.167 69.141 25.06 1 60 0 O47 B96 401 A 1 HETATM 38 C C48 B96 . . . B 2 23.425 68.941 26.256 1 59.01 0 C48 B96 401 A 1 HETATM 39 C C49 B96 . . . B 2 22.015 68.5 25.961 1 59.2 0 C49 B96 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #