data_8YGZ
#
_model_server_result.job_id            SMEM7YoLIbfZmyto2HULkA 
_model_server_result.datetime_utc      '2024-11-09 01:57:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ygz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":603}' 
#
_entry.id    8YGZ 
#
_exptl.entry_id    8YGZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YGZ 
_cell.length_a            61.09 
_cell.length_b            75.02 
_cell.length_c            77.704 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YGZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PRO 247 A PRO 482 1_555 A N CSO 248 A CSO 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C CSO 248 A CSO 483 1_555 A N VAL 249 A VAL 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 97 n n 
C1 C2 EDO sing 98 n n 
C1 H11 EDO sing 99 n n 
C1 H12 EDO sing 100 n n 
O1 HO1 EDO sing 101 n n 
C2 O2 EDO sing 102 n n 
C2 H21 EDO sing 103 n n 
C2 H22 EDO sing 104 n n 
O2 HO2 EDO sing 105 n n 
#
_atom_sites.entry_id                     8YGZ 
_atom_sites.fract_transf_matrix[1][1]    0.016369 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01333 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012869 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 601 1 EDO EDO . 
C 2 EDO A 1 602 2 EDO EDO . 
D 2 EDO A 1 603 3 EDO EDO . 
E 2 EDO A 1 604 4 EDO EDO . 
F 2 EDO A 1 605 5 EDO EDO . 
G 2 EDO A 1 606 6 EDO EDO . 
H 2 EDO A 1 607 7 EDO EDO . 
I 3 PEG A 1 608 8 PEG PEG . 
J 2 EDO A 1 609 9 EDO EDO . 
K 2 EDO A 1 610 10 EDO EDO . 
L 2 EDO A 1 611 11 EDO EDO . 
M 4 HOH A 1 701 97 HOH HOH . 
M 4 HOH A 2 702 137 HOH HOH . 
M 4 HOH A 3 703 150 HOH HOH . 
M 4 HOH A 4 704 30 HOH HOH . 
M 4 HOH A 5 705 76 HOH HOH . 
M 4 HOH A 6 706 90 HOH HOH . 
M 4 HOH A 7 707 164 HOH HOH . 
M 4 HOH A 8 708 162 HOH HOH . 
M 4 HOH A 9 709 134 HOH HOH . 
M 4 HOH A 10 710 158 HOH HOH . 
M 4 HOH A 11 711 34 HOH HOH . 
M 4 HOH A 12 712 136 HOH HOH . 
M 4 HOH A 13 713 115 HOH HOH . 
M 4 HOH A 14 714 103 HOH HOH . 
M 4 HOH A 15 715 23 HOH HOH . 
M 4 HOH A 16 716 54 HOH HOH . 
M 4 HOH A 17 717 39 HOH HOH . 
M 4 HOH A 18 718 36 HOH HOH . 
M 4 HOH A 19 719 77 HOH HOH . 
M 4 HOH A 20 720 59 HOH HOH . 
M 4 HOH A 21 721 94 HOH HOH . 
M 4 HOH A 22 722 169 HOH HOH . 
M 4 HOH A 23 723 82 HOH HOH . 
M 4 HOH A 24 724 51 HOH HOH . 
M 4 HOH A 25 725 26 HOH HOH . 
M 4 HOH A 26 726 24 HOH HOH . 
M 4 HOH A 27 727 80 HOH HOH . 
M 4 HOH A 28 728 29 HOH HOH . 
M 4 HOH A 29 729 131 HOH HOH . 
M 4 HOH A 30 730 61 HOH HOH . 
M 4 HOH A 31 731 62 HOH HOH . 
M 4 HOH A 32 732 111 HOH HOH . 
M 4 HOH A 33 733 113 HOH HOH . 
M 4 HOH A 34 734 73 HOH HOH . 
M 4 HOH A 35 735 16 HOH HOH . 
M 4 HOH A 36 736 42 HOH HOH . 
M 4 HOH A 37 737 161 HOH HOH . 
M 4 HOH A 38 738 89 HOH HOH . 
M 4 HOH A 39 739 15 HOH HOH . 
M 4 HOH A 40 740 19 HOH HOH . 
M 4 HOH A 41 741 84 HOH HOH . 
M 4 HOH A 42 742 40 HOH HOH . 
M 4 HOH A 43 743 13 HOH HOH . 
M 4 HOH A 44 744 10 HOH HOH . 
M 4 HOH A 45 745 45 HOH HOH . 
M 4 HOH A 46 746 7 HOH HOH . 
M 4 HOH A 47 747 65 HOH HOH . 
M 4 HOH A 48 748 151 HOH HOH . 
M 4 HOH A 49 749 159 HOH HOH . 
M 4 HOH A 50 750 157 HOH HOH . 
M 4 HOH A 51 751 52 HOH HOH . 
M 4 HOH A 52 752 78 HOH HOH . 
M 4 HOH A 53 753 66 HOH HOH . 
M 4 HOH A 54 754 167 HOH HOH . 
M 4 HOH A 55 755 145 HOH HOH . 
M 4 HOH A 56 756 27 HOH HOH . 
M 4 HOH A 57 757 4 HOH HOH . 
M 4 HOH A 58 758 5 HOH HOH . 
M 4 HOH A 59 759 56 HOH HOH . 
M 4 HOH A 60 760 3 HOH HOH . 
M 4 HOH A 61 761 117 HOH HOH . 
M 4 HOH A 62 762 20 HOH HOH . 
M 4 HOH A 63 763 102 HOH HOH . 
M 4 HOH A 64 764 35 HOH HOH . 
M 4 HOH A 65 765 85 HOH HOH . 
M 4 HOH A 66 766 154 HOH HOH . 
M 4 HOH A 67 767 114 HOH HOH . 
M 4 HOH A 68 768 101 HOH HOH . 
M 4 HOH A 69 769 141 HOH HOH . 
M 4 HOH A 70 770 31 HOH HOH . 
M 4 HOH A 71 771 88 HOH HOH . 
M 4 HOH A 72 772 58 HOH HOH . 
M 4 HOH A 73 773 75 HOH HOH . 
M 4 HOH A 74 774 53 HOH HOH . 
M 4 HOH A 75 775 38 HOH HOH . 
M 4 HOH A 76 776 168 HOH HOH . 
M 4 HOH A 77 777 6 HOH HOH . 
M 4 HOH A 78 778 41 HOH HOH . 
M 4 HOH A 79 779 133 HOH HOH . 
M 4 HOH A 80 780 96 HOH HOH . 
M 4 HOH A 81 781 99 HOH HOH . 
M 4 HOH A 82 782 74 HOH HOH . 
M 4 HOH A 83 783 46 HOH HOH . 
M 4 HOH A 84 784 21 HOH HOH . 
M 4 HOH A 85 785 12 HOH HOH . 
M 4 HOH A 86 786 81 HOH HOH . 
M 4 HOH A 87 787 120 HOH HOH . 
M 4 HOH A 88 788 100 HOH HOH . 
M 4 HOH A 89 789 93 HOH HOH . 
M 4 HOH A 90 790 155 HOH HOH . 
M 4 HOH A 91 791 44 HOH HOH . 
M 4 HOH A 92 792 9 HOH HOH . 
M 4 HOH A 93 793 17 HOH HOH . 
M 4 HOH A 94 794 125 HOH HOH . 
M 4 HOH A 95 795 50 HOH HOH . 
M 4 HOH A 96 796 153 HOH HOH . 
M 4 HOH A 97 797 122 HOH HOH . 
M 4 HOH A 98 798 22 HOH HOH . 
M 4 HOH A 99 799 105 HOH HOH . 
M 4 HOH A 100 800 147 HOH HOH . 
M 4 HOH A 101 801 127 HOH HOH . 
M 4 HOH A 102 802 132 HOH HOH . 
M 4 HOH A 103 803 33 HOH HOH . 
M 4 HOH A 104 804 91 HOH HOH . 
M 4 HOH A 105 805 123 HOH HOH . 
M 4 HOH A 106 806 14 HOH HOH . 
M 4 HOH A 107 807 28 HOH HOH . 
M 4 HOH A 108 808 138 HOH HOH . 
M 4 HOH A 109 809 152 HOH HOH . 
M 4 HOH A 110 810 143 HOH HOH . 
M 4 HOH A 111 811 8 HOH HOH . 
M 4 HOH A 112 812 95 HOH HOH . 
M 4 HOH A 113 813 148 HOH HOH . 
M 4 HOH A 114 814 37 HOH HOH . 
M 4 HOH A 115 815 92 HOH HOH . 
M 4 HOH A 116 816 98 HOH HOH . 
M 4 HOH A 117 817 47 HOH HOH . 
M 4 HOH A 118 818 60 HOH HOH . 
M 4 HOH A 119 819 67 HOH HOH . 
M 4 HOH A 120 820 18 HOH HOH . 
M 4 HOH A 121 821 49 HOH HOH . 
M 4 HOH A 122 822 142 HOH HOH . 
M 4 HOH A 123 823 112 HOH HOH . 
M 4 HOH A 124 824 57 HOH HOH . 
M 4 HOH A 125 825 140 HOH HOH . 
M 4 HOH A 126 826 110 HOH HOH . 
M 4 HOH A 127 827 83 HOH HOH . 
M 4 HOH A 128 828 166 HOH HOH . 
M 4 HOH A 129 829 165 HOH HOH . 
M 4 HOH A 130 830 172 HOH HOH . 
M 4 HOH A 131 831 128 HOH HOH . 
M 4 HOH A 132 832 130 HOH HOH . 
M 4 HOH A 133 833 146 HOH HOH . 
M 4 HOH A 134 834 48 HOH HOH . 
M 4 HOH A 135 835 87 HOH HOH . 
M 4 HOH A 136 836 104 HOH HOH . 
M 4 HOH A 137 837 139 HOH HOH . 
M 4 HOH A 138 838 72 HOH HOH . 
M 4 HOH A 139 839 79 HOH HOH . 
M 4 HOH A 140 840 174 HOH HOH . 
M 4 HOH A 141 841 71 HOH HOH . 
M 4 HOH A 142 842 124 HOH HOH . 
M 4 HOH A 143 843 55 HOH HOH . 
M 4 HOH A 144 844 129 HOH HOH . 
M 4 HOH A 145 845 25 HOH HOH . 
M 4 HOH A 146 846 2 HOH HOH . 
M 4 HOH A 147 847 149 HOH HOH . 
M 4 HOH A 148 848 64 HOH HOH . 
M 4 HOH A 149 849 176 HOH HOH . 
M 4 HOH A 150 850 69 HOH HOH . 
M 4 HOH A 151 851 173 HOH HOH . 
M 4 HOH A 152 852 11 HOH HOH . 
M 4 HOH A 153 853 119 HOH HOH . 
M 4 HOH A 154 854 32 HOH HOH . 
M 4 HOH A 155 855 86 HOH HOH . 
M 4 HOH A 156 856 1 HOH HOH . 
M 4 HOH A 157 857 163 HOH HOH . 
M 4 HOH A 158 858 144 HOH HOH . 
M 4 HOH A 159 859 171 HOH HOH . 
M 4 HOH A 160 860 160 HOH HOH . 
M 4 HOH A 161 861 118 HOH HOH . 
M 4 HOH A 162 862 68 HOH HOH . 
M 4 HOH A 163 863 175 HOH HOH . 
M 4 HOH A 164 864 70 HOH HOH . 
M 4 HOH A 165 865 121 HOH HOH . 
M 4 HOH A 166 866 135 HOH HOH . 
M 4 HOH A 167 867 106 HOH HOH . 
M 4 HOH A 168 868 63 HOH HOH . 
M 4 HOH A 169 869 170 HOH HOH . 
M 4 HOH A 170 870 156 HOH HOH . 
M 4 HOH A 171 871 126 HOH HOH . 
M 4 HOH A 172 872 43 HOH HOH . 
M 4 HOH A 173 873 107 HOH HOH . 
M 4 HOH A 174 874 109 HOH HOH . 
M 4 HOH A 175 875 116 HOH HOH . 
M 4 HOH A 176 876 108 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 2 10.802 27.845 -8.841 1 71.34 0 C1 EDO 603 A 1 
HETATM 2 O O1 EDO . . . D 2 9.854 28.228 -7.862 1 75.27 0 O1 EDO 603 A 1 
HETATM 3 C C2 EDO . . . D 2 11.582 26.634 -8.465 1 71.1 0 C2 EDO 603 A 1 
HETATM 4 O O2 EDO . . . D 2 12.292 26.063 -9.554 1 73.48 0 O2 EDO 603 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#