data_8YH0
#
_model_server_result.job_id            YiuvpcFDFMS3HEFQvBfqdQ 
_model_server_result.datetime_utc      '2024-12-01 00:02:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yh0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":801}' 
#
_entry.id    8YH0 
#
_exptl.entry_id    8YH0 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              308.293 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YH0 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YH0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 108 R CYS 83 1_555 A SG CYS 190 R CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C12 H16 N6 O4' 
_chem_comp.formula_weight    308.293 
_chem_comp.id                NEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-ETHYL-5'-CARBOXAMIDO ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5' O5' NEC doub 235 n n 
C5' N5' NEC sing 236 n n 
C5' C4' NEC sing 237 n n 
N5' C51 NEC sing 238 n n 
N5' HN5 NEC sing 239 n n 
C51 C52 NEC sing 240 n n 
C51 H511 NEC sing 241 n n 
C51 H512 NEC sing 242 n n 
C52 H521 NEC sing 243 n n 
C52 H522 NEC sing 244 n n 
C52 H523 NEC sing 245 n n 
C4' O4' NEC sing 246 n n 
C4' C3' NEC sing 247 n n 
C4' H4' NEC sing 248 n n 
O4' C1' NEC sing 249 n n 
C3' O3' NEC sing 250 n n 
C3' C2' NEC sing 251 n n 
C3' H3' NEC sing 252 n n 
O3' HO3' NEC sing 253 n n 
C2' O2' NEC sing 254 n n 
C2' C1' NEC sing 255 n n 
C2' H2' NEC sing 256 n n 
O2' HO2' NEC sing 257 n n 
C1' N9 NEC sing 258 n n 
C1' H1' NEC sing 259 n n 
N9 C8 NEC sing 260 n y 
N9 C4 NEC sing 261 n y 
C8 N7 NEC doub 262 n y 
C8 H8 NEC sing 263 n n 
N7 C5 NEC sing 264 n y 
C5 C6 NEC sing 265 n y 
C5 C4 NEC doub 266 n y 
C6 N6 NEC sing 267 n n 
C6 N1 NEC doub 268 n y 
N6 HN61 NEC sing 269 n n 
N6 HN62 NEC sing 270 n n 
N1 C2 NEC sing 271 n y 
C2 N3 NEC doub 272 n y 
C2 H2 NEC sing 273 n n 
N3 C4 NEC sing 274 n y 
#
_atom_sites.entry_id                     8YH0 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        5 
_pdbx_nonpoly_scheme.mon_id           NEC 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      801 
_pdbx_nonpoly_scheme.auth_seq_num     400 
_pdbx_nonpoly_scheme.pdb_mon_id       NEC 
_pdbx_nonpoly_scheme.auth_mon_id      NEC 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5' NEC . . . F 5 105.433 113.058 144.268 1 30.4 ? C5' NEC 801 R 1 
HETATM 2 O O5' NEC . . . F 5 105.746 113.66 145.238 1 30.4 ? O5' NEC 801 R 1 
HETATM 3 N N5' NEC . . . F 5 106.458 112.521 143.392 1 30.4 ? N5' NEC 801 R 1 
HETATM 4 C C51 NEC . . . F 5 107.86 112.724 143.705 1 30.4 ? C51 NEC 801 R 1 
HETATM 5 C C52 NEC . . . F 5 108.656 112.908 142.416 1 30.4 ? C52 NEC 801 R 1 
HETATM 6 C C4' NEC . . . F 5 103.981 112.851 143.952 1 30.4 ? C4' NEC 801 R 1 
HETATM 7 O O4' NEC . . . F 5 103.37 112.024 144.978 1 30.4 ? O4' NEC 801 R 1 
HETATM 8 C C3' NEC . . . F 5 103.261 114.163 143.954 1 30.4 ? C3' NEC 801 R 1 
HETATM 9 O O3' NEC . . . F 5 102.857 114.501 142.626 1 30.4 ? O3' NEC 801 R 1 
HETATM 10 C C2' NEC . . . F 5 102.065 114.006 144.811 1 30.4 ? C2' NEC 801 R 1 
HETATM 11 O O2' NEC . . . F 5 100.892 114 143.997 1 30.4 ? O2' NEC 801 R 1 
HETATM 12 C C1' NEC . . . F 5 102.195 112.694 145.519 1 30.4 ? C1' NEC 801 R 1 
HETATM 13 N N9 NEC . . . F 5 102.348 112.888 146.925 1 30.4 ? N9 NEC 801 R 1 
HETATM 14 C C8 NEC . . . F 5 103.502 112.991 147.406 1 30.4 ? C8 NEC 801 R 1 
HETATM 15 N N7 NEC . . . F 5 103.349 113.156 148.723 1 30.4 ? N7 NEC 801 R 1 
HETATM 16 C C5 NEC . . . F 5 101.857 113.141 149.031 1 30.4 ? C5 NEC 801 R 1 
HETATM 17 C C6 NEC . . . F 5 100.931 113.24 150.058 1 30.4 ? C6 NEC 801 R 1 
HETATM 18 N N6 NEC . . . F 5 101.385 113.435 151.422 1 30.4 ? N6 NEC 801 R 1 
HETATM 19 N N1 NEC . . . F 5 99.646 113.16 149.798 1 30.4 ? N1 NEC 801 R 1 
HETATM 20 C C2 NEC . . . F 5 99.197 112.984 148.579 1 30.4 ? C2 NEC 801 R 1 
HETATM 21 N N3 NEC . . . F 5 99.986 112.877 147.529 1 30.4 ? N3 NEC 801 R 1 
HETATM 22 C C4 NEC . . . F 5 101.304 112.945 147.673 1 30.4 ? C4 NEC 801 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#