data_8YHQ # _model_server_result.job_id qGyd658HRhhjZ3HWyvxHDg _model_server_result.datetime_utc '2024-12-26 12:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yhq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":401}' # _entry.id 8YHQ # _exptl.entry_id 8YHQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 592.891 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YHQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 AA N N ? 16 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 129 E CYS 159 1_555 E SG CYS 134 E CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? disulf ? disulf2 E SG CYS 148 E CYS 178 1_555 E SG CYS 150 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? disulf ? disulf3 F SG CYS 29 F CYS 101 1_555 F SG CYS 51 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? disulf ? disulf4 N SG CYS 134 N CYS 164 1_555 N SG CYS 150 N CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? disulf ? disulf5 P SG CYS 29 O CYS 101 1_555 P SG CYS 51 O CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc1 B NE2 HIS 82 C HIS 82 1_555 W FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc2 B NE2 HIS 96 C HIS 96 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc3 B NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc4 B NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 CA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc6 G NE2 HIS 82 L HIS 82 1_555 GA FE HEM . L HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc7 G NE2 HIS 96 L HIS 96 1_555 IA FE HEM . L HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc8 G NE2 HIS 183 L HIS 183 1_555 GA FE HEM . L HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc9 G NE2 HIS 197 L HIS 197 1_555 IA FE HEM . L HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc10 M NE2 HIS 44 M HIS 105 1_555 KA FE HEM . M HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? # _chem_comp.formula 'C39 H60 O4' _chem_comp.formula_weight 592.891 _chem_comp.id UQ6 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1M UQ6 sing 1112 n n C1 C2 UQ6 doub 1113 n y C1 C6 UQ6 sing 1114 n y C1M H1M1 UQ6 sing 1115 n n C1M H1M2 UQ6 sing 1116 n n C1M H1M3 UQ6 sing 1117 n n C2 O2 UQ6 sing 1118 n n C2 C3 UQ6 sing 1119 n y O2 HO2 UQ6 sing 1120 n n C3 C4 UQ6 doub 1121 n y C3 O3 UQ6 sing 1122 n n C4 C5 UQ6 sing 1123 n y C4 O4 UQ6 sing 1124 n n C5 O5 UQ6 sing 1125 n n C5 C6 UQ6 doub 1126 n y O5 HO5 UQ6 sing 1127 n n C6 C7 UQ6 sing 1128 n n O3 C3M UQ6 sing 1129 n n C3M H3M1 UQ6 sing 1130 n n C3M H3M2 UQ6 sing 1131 n n C3M H3M3 UQ6 sing 1132 n n O4 C4M UQ6 sing 1133 n n C4M H4M1 UQ6 sing 1134 n n C4M H4M2 UQ6 sing 1135 n n C4M H4M3 UQ6 sing 1136 n n C7 C8 UQ6 sing 1137 n n C7 H71 UQ6 sing 1138 n n C7 H72 UQ6 sing 1139 n n C8 C9 UQ6 doub 1140 e n C8 H8 UQ6 sing 1141 n n C9 C10 UQ6 sing 1142 n n C9 C11 UQ6 sing 1143 n n C10 H101 UQ6 sing 1144 n n C10 H102 UQ6 sing 1145 n n C10 H103 UQ6 sing 1146 n n C11 C12 UQ6 sing 1147 n n C11 H111 UQ6 sing 1148 n n C11 H112 UQ6 sing 1149 n n C12 C13 UQ6 sing 1150 n n C12 H121 UQ6 sing 1151 n n C12 H122 UQ6 sing 1152 n n C13 C14 UQ6 doub 1153 e n C13 H13 UQ6 sing 1154 n n C14 C15 UQ6 sing 1155 n n C14 C16 UQ6 sing 1156 n n C15 H151 UQ6 sing 1157 n n C15 H152 UQ6 sing 1158 n n C15 H153 UQ6 sing 1159 n n C16 C17 UQ6 sing 1160 n n C16 H161 UQ6 sing 1161 n n C16 H162 UQ6 sing 1162 n n C17 C18 UQ6 sing 1163 n n C17 H171 UQ6 sing 1164 n n C17 H172 UQ6 sing 1165 n n C18 C19 UQ6 doub 1166 z n C18 H18 UQ6 sing 1167 n n C19 C20 UQ6 sing 1168 n n C19 C21 UQ6 sing 1169 n n C20 H201 UQ6 sing 1170 n n C20 H202 UQ6 sing 1171 n n C20 H203 UQ6 sing 1172 n n C21 C22 UQ6 sing 1173 n n C21 H211 UQ6 sing 1174 n n C21 H212 UQ6 sing 1175 n n C22 C23 UQ6 sing 1176 n n C22 H221 UQ6 sing 1177 n n C22 H222 UQ6 sing 1178 n n C23 C24 UQ6 doub 1179 e n C23 H23 UQ6 sing 1180 n n C24 C25 UQ6 sing 1181 n n C24 C26 UQ6 sing 1182 n n C25 H251 UQ6 sing 1183 n n C25 H252 UQ6 sing 1184 n n C25 H253 UQ6 sing 1185 n n C26 C27 UQ6 sing 1186 n n C26 H261 UQ6 sing 1187 n n C26 H262 UQ6 sing 1188 n n C27 C28 UQ6 sing 1189 n n C27 H271 UQ6 sing 1190 n n C27 H272 UQ6 sing 1191 n n C28 C29 UQ6 doub 1192 e n C28 H28 UQ6 sing 1193 n n C29 C30 UQ6 sing 1194 n n C29 C31 UQ6 sing 1195 n n C30 H301 UQ6 sing 1196 n n C30 H302 UQ6 sing 1197 n n C30 H303 UQ6 sing 1198 n n C31 C32 UQ6 sing 1199 n n C31 H311 UQ6 sing 1200 n n C31 H312 UQ6 sing 1201 n n C32 C33 UQ6 sing 1202 n n C32 H321 UQ6 sing 1203 n n C32 H322 UQ6 sing 1204 n n C33 C34 UQ6 doub 1205 n n C33 H33 UQ6 sing 1206 n n C34 C35 UQ6 sing 1207 n n C34 C36 UQ6 sing 1208 n n C35 H351 UQ6 sing 1209 n n C35 H352 UQ6 sing 1210 n n C35 H353 UQ6 sing 1211 n n C36 H361 UQ6 sing 1212 n n C36 H362 UQ6 sing 1213 n n C36 H363 UQ6 sing 1214 n n # _atom_sites.entry_id 8YHQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 6PH C 1 401 402 6PH 6PH . V 12 9PE C 1 402 403 9PE 9PE . W 13 HEM C 1 403 404 HEM HEM . X 13 HEM C 1 404 405 HEM HEM . Y 14 8PE C 1 405 406 8PE 8PE . Z 15 CN5 C 1 406 407 CN5 CN5 . AA 16 UQ6 C 1 407 408 UQ6 UQ6 . BA 17 A1D6K C 1 408 401 A1D6K A1D . CA 13 HEM D 1 401 402 HEM HEM . DA 18 7PH D 1 402 401 7PH 7PH . EA 16 UQ6 L 1 401 402 UQ6 UQ6 . FA 12 9PE L 1 402 403 9PE 9PE . GA 13 HEM L 1 403 404 HEM HEM . HA 19 CN3 L 1 404 405 CN3 CN3 . IA 13 HEM L 1 405 406 HEM HEM . JA 17 A1D6K L 1 406 401 A1D6K A1D . KA 13 HEM M 1 401 401 HEM HEM . LA 11 6PH N 1 401 401 6PH 6PH . MA 18 7PH N 1 402 402 7PH 7PH . NA 14 8PE Q 1 101 101 8PE 8PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UQ6 . . . EA 16 143.975 146.244 128.44 1 22.15 ? C1 UQ6 401 L 1 HETATM 2 C C1M UQ6 . . . EA 16 144.772 147.19 127.556 1 22.15 ? C1M UQ6 401 L 1 HETATM 3 C C2 UQ6 . . . EA 16 144.543 146.11 129.694 1 22.15 ? C2 UQ6 401 L 1 HETATM 4 O O2 UQ6 . . . EA 16 145.708 146.816 130.018 1 22.15 ? O2 UQ6 401 L 1 HETATM 5 C C3 UQ6 . . . EA 16 143.956 145.287 130.63 1 22.15 ? C3 UQ6 401 L 1 HETATM 6 C C4 UQ6 . . . EA 16 142.807 144.601 130.285 1 22.15 ? C4 UQ6 401 L 1 HETATM 7 C C5 UQ6 . . . EA 16 142.234 144.735 129.023 1 22.15 ? C5 UQ6 401 L 1 HETATM 8 O O5 UQ6 . . . EA 16 141.064 144.027 128.718 1 22.15 ? O5 UQ6 401 L 1 HETATM 9 C C6 UQ6 . . . EA 16 142.825 145.539 128.056 1 22.15 ? C6 UQ6 401 L 1 HETATM 10 O O3 UQ6 . . . EA 16 144.511 145.134 131.933 1 22.15 ? O3 UQ6 401 L 1 HETATM 11 C C3M UQ6 . . . EA 16 145.843 144.704 132.033 1 22.15 ? C3M UQ6 401 L 1 HETATM 12 O O4 UQ6 . . . EA 16 142.207 143.753 131.238 1 22.15 ? O4 UQ6 401 L 1 HETATM 13 C C4M UQ6 . . . EA 16 142.982 142.632 131.588 1 22.15 ? C4M UQ6 401 L 1 HETATM 14 C C7 UQ6 . . . EA 16 142.111 145.699 126.656 1 22.15 ? C7 UQ6 401 L 1 HETATM 15 C C8 UQ6 . . . EA 16 141.922 144.597 125.572 1 22.15 ? C8 UQ6 401 L 1 HETATM 16 C C9 UQ6 . . . EA 16 142.792 143.682 125.109 1 22.15 ? C9 UQ6 401 L 1 HETATM 17 C C10 UQ6 . . . EA 16 144.23 143.565 125.65 1 22.15 ? C10 UQ6 401 L 1 HETATM 18 C C11 UQ6 . . . EA 16 142.362 142.711 123.946 1 22.15 ? C11 UQ6 401 L 1 HETATM 19 C C12 UQ6 . . . EA 16 140.915 142.128 123.943 1 22.15 ? C12 UQ6 401 L 1 HETATM 20 C C13 UQ6 . . . EA 16 140.33 142.259 122.473 1 22.15 ? C13 UQ6 401 L 1 HETATM 21 C C14 UQ6 . . . EA 16 139.483 141.384 121.857 1 22.15 ? C14 UQ6 401 L 1 HETATM 22 C C15 UQ6 . . . EA 16 138.978 140.09 122.496 1 22.15 ? C15 UQ6 401 L 1 HETATM 23 C C16 UQ6 . . . EA 16 139.094 141.781 120.375 1 22.15 ? C16 UQ6 401 L 1 HETATM 24 C C17 UQ6 . . . EA 16 137.765 141.302 119.707 1 22.15 ? C17 UQ6 401 L 1 HETATM 25 C C18 UQ6 . . . EA 16 137.895 141.96 118.285 1 22.15 ? C18 UQ6 401 L 1 HETATM 26 C C19 UQ6 . . . EA 16 136.96 142.33 117.363 1 22.15 ? C19 UQ6 401 L 1 HETATM 27 C C20 UQ6 . . . EA 16 137.538 142.968 116.092 1 22.15 ? C20 UQ6 401 L 1 HETATM 28 C C21 UQ6 . . . EA 16 135.403 142.169 117.473 1 22.15 ? C21 UQ6 401 L 1 HETATM 29 C C22 UQ6 . . . EA 16 134.696 142.782 116.202 1 22.15 ? C22 UQ6 401 L 1 HETATM 30 C C23 UQ6 . . . EA 16 133.177 142.518 116.013 1 22.15 ? C23 UQ6 401 L 1 HETATM 31 C C24 UQ6 . . . EA 16 132.45 143.173 115.08 1 22.15 ? C24 UQ6 401 L 1 HETATM 32 C C25 UQ6 . . . EA 16 130.975 142.814 114.97 1 22.15 ? C25 UQ6 401 L 1 HETATM 33 C C26 UQ6 . . . EA 16 132.972 144.289 114.111 1 22.15 ? C26 UQ6 401 L 1 HETATM 34 C C27 UQ6 . . . EA 16 133.132 143.742 112.669 1 22.15 ? C27 UQ6 401 L 1 HETATM 35 C C28 UQ6 . . . EA 16 132.362 144.282 111.415 1 22.15 ? C28 UQ6 401 L 1 HETATM 36 C C29 UQ6 . . . EA 16 131.413 145.236 111.239 1 22.15 ? C29 UQ6 401 L 1 HETATM 37 C C30 UQ6 . . . EA 16 130.817 146.121 112.335 1 22.15 ? C30 UQ6 401 L 1 HETATM 38 C C31 UQ6 . . . EA 16 130.877 145.486 109.793 1 22.15 ? C31 UQ6 401 L 1 HETATM 39 C C32 UQ6 . . . EA 16 129.353 145.333 109.7 1 22.15 ? C32 UQ6 401 L 1 HETATM 40 C C33 UQ6 . . . EA 16 128.686 146.716 109.512 1 22.15 ? C33 UQ6 401 L 1 HETATM 41 C C34 UQ6 . . . EA 16 127.548 146.923 108.851 1 22.15 ? C34 UQ6 401 L 1 HETATM 42 C C35 UQ6 . . . EA 16 127.019 148.349 108.761 1 22.15 ? C35 UQ6 401 L 1 HETATM 43 C C36 UQ6 . . . EA 16 126.73 145.828 108.167 1 22.15 ? C36 UQ6 401 L 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 102 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #