data_8YHQ
#
_model_server_result.job_id            5AZKramnNTwBUWz4wjD6Sw 
_model_server_result.datetime_utc      '2024-12-26 12:52:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yhq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":407}' 
#
_entry.id    8YHQ 
#
_exptl.entry_id    8YHQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              592.891 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YHQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YHQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 AA N N 
? 16 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 129 E CYS 159 1_555 E SG CYS 134 E CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
disulf ? disulf2 E SG CYS 148 E CYS 178 1_555 E SG CYS 150 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
disulf ? disulf3 F SG CYS 29 F CYS 101 1_555 F SG CYS 51 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
disulf ? disulf4 N SG CYS 134 N CYS 164 1_555 N SG CYS 150 N CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
disulf ? disulf5 P SG CYS 29 O CYS 101 1_555 P SG CYS 51 O CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc1 B NE2 HIS 82 C HIS 82 1_555 W FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc2 B NE2 HIS 96 C HIS 96 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc3 B NE2 HIS 183 C HIS 183 1_555 W FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc4 B NE2 HIS 197 C HIS 197 1_555 X FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 CA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc6 G NE2 HIS 82 L HIS 82 1_555 GA FE HEM . L HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
metalc ? metalc7 G NE2 HIS 96 L HIS 96 1_555 IA FE HEM . L HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc8 G NE2 HIS 183 L HIS 183 1_555 GA FE HEM . L HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? 
metalc ? metalc9 G NE2 HIS 197 L HIS 197 1_555 IA FE HEM . L HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc10 M NE2 HIS 44 M HIS 105 1_555 KA FE HEM . M HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
#
_chem_comp.formula           'C39 H60 O4' 
_chem_comp.formula_weight    592.891 
_chem_comp.id                UQ6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1M UQ6 sing 1112 n n 
C1 C2 UQ6 doub 1113 n y 
C1 C6 UQ6 sing 1114 n y 
C1M H1M1 UQ6 sing 1115 n n 
C1M H1M2 UQ6 sing 1116 n n 
C1M H1M3 UQ6 sing 1117 n n 
C2 O2 UQ6 sing 1118 n n 
C2 C3 UQ6 sing 1119 n y 
O2 HO2 UQ6 sing 1120 n n 
C3 C4 UQ6 doub 1121 n y 
C3 O3 UQ6 sing 1122 n n 
C4 C5 UQ6 sing 1123 n y 
C4 O4 UQ6 sing 1124 n n 
C5 O5 UQ6 sing 1125 n n 
C5 C6 UQ6 doub 1126 n y 
O5 HO5 UQ6 sing 1127 n n 
C6 C7 UQ6 sing 1128 n n 
O3 C3M UQ6 sing 1129 n n 
C3M H3M1 UQ6 sing 1130 n n 
C3M H3M2 UQ6 sing 1131 n n 
C3M H3M3 UQ6 sing 1132 n n 
O4 C4M UQ6 sing 1133 n n 
C4M H4M1 UQ6 sing 1134 n n 
C4M H4M2 UQ6 sing 1135 n n 
C4M H4M3 UQ6 sing 1136 n n 
C7 C8 UQ6 sing 1137 n n 
C7 H71 UQ6 sing 1138 n n 
C7 H72 UQ6 sing 1139 n n 
C8 C9 UQ6 doub 1140 e n 
C8 H8 UQ6 sing 1141 n n 
C9 C10 UQ6 sing 1142 n n 
C9 C11 UQ6 sing 1143 n n 
C10 H101 UQ6 sing 1144 n n 
C10 H102 UQ6 sing 1145 n n 
C10 H103 UQ6 sing 1146 n n 
C11 C12 UQ6 sing 1147 n n 
C11 H111 UQ6 sing 1148 n n 
C11 H112 UQ6 sing 1149 n n 
C12 C13 UQ6 sing 1150 n n 
C12 H121 UQ6 sing 1151 n n 
C12 H122 UQ6 sing 1152 n n 
C13 C14 UQ6 doub 1153 e n 
C13 H13 UQ6 sing 1154 n n 
C14 C15 UQ6 sing 1155 n n 
C14 C16 UQ6 sing 1156 n n 
C15 H151 UQ6 sing 1157 n n 
C15 H152 UQ6 sing 1158 n n 
C15 H153 UQ6 sing 1159 n n 
C16 C17 UQ6 sing 1160 n n 
C16 H161 UQ6 sing 1161 n n 
C16 H162 UQ6 sing 1162 n n 
C17 C18 UQ6 sing 1163 n n 
C17 H171 UQ6 sing 1164 n n 
C17 H172 UQ6 sing 1165 n n 
C18 C19 UQ6 doub 1166 z n 
C18 H18 UQ6 sing 1167 n n 
C19 C20 UQ6 sing 1168 n n 
C19 C21 UQ6 sing 1169 n n 
C20 H201 UQ6 sing 1170 n n 
C20 H202 UQ6 sing 1171 n n 
C20 H203 UQ6 sing 1172 n n 
C21 C22 UQ6 sing 1173 n n 
C21 H211 UQ6 sing 1174 n n 
C21 H212 UQ6 sing 1175 n n 
C22 C23 UQ6 sing 1176 n n 
C22 H221 UQ6 sing 1177 n n 
C22 H222 UQ6 sing 1178 n n 
C23 C24 UQ6 doub 1179 e n 
C23 H23 UQ6 sing 1180 n n 
C24 C25 UQ6 sing 1181 n n 
C24 C26 UQ6 sing 1182 n n 
C25 H251 UQ6 sing 1183 n n 
C25 H252 UQ6 sing 1184 n n 
C25 H253 UQ6 sing 1185 n n 
C26 C27 UQ6 sing 1186 n n 
C26 H261 UQ6 sing 1187 n n 
C26 H262 UQ6 sing 1188 n n 
C27 C28 UQ6 sing 1189 n n 
C27 H271 UQ6 sing 1190 n n 
C27 H272 UQ6 sing 1191 n n 
C28 C29 UQ6 doub 1192 e n 
C28 H28 UQ6 sing 1193 n n 
C29 C30 UQ6 sing 1194 n n 
C29 C31 UQ6 sing 1195 n n 
C30 H301 UQ6 sing 1196 n n 
C30 H302 UQ6 sing 1197 n n 
C30 H303 UQ6 sing 1198 n n 
C31 C32 UQ6 sing 1199 n n 
C31 H311 UQ6 sing 1200 n n 
C31 H312 UQ6 sing 1201 n n 
C32 C33 UQ6 sing 1202 n n 
C32 H321 UQ6 sing 1203 n n 
C32 H322 UQ6 sing 1204 n n 
C33 C34 UQ6 doub 1205 n n 
C33 H33 UQ6 sing 1206 n n 
C34 C35 UQ6 sing 1207 n n 
C34 C36 UQ6 sing 1208 n n 
C35 H351 UQ6 sing 1209 n n 
C35 H352 UQ6 sing 1210 n n 
C35 H353 UQ6 sing 1211 n n 
C36 H361 UQ6 sing 1212 n n 
C36 H362 UQ6 sing 1213 n n 
C36 H363 UQ6 sing 1214 n n 
#
_atom_sites.entry_id                     8YHQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 6PH C 1 401 402 6PH 6PH . 
V 12 9PE C 1 402 403 9PE 9PE . 
W 13 HEM C 1 403 404 HEM HEM . 
X 13 HEM C 1 404 405 HEM HEM . 
Y 14 8PE C 1 405 406 8PE 8PE . 
Z 15 CN5 C 1 406 407 CN5 CN5 . 
AA 16 UQ6 C 1 407 408 UQ6 UQ6 . 
BA 17 A1D6K C 1 408 401 A1D6K A1D . 
CA 13 HEM D 1 401 402 HEM HEM . 
DA 18 7PH D 1 402 401 7PH 7PH . 
EA 16 UQ6 L 1 401 402 UQ6 UQ6 . 
FA 12 9PE L 1 402 403 9PE 9PE . 
GA 13 HEM L 1 403 404 HEM HEM . 
HA 19 CN3 L 1 404 405 CN3 CN3 . 
IA 13 HEM L 1 405 406 HEM HEM . 
JA 17 A1D6K L 1 406 401 A1D6K A1D . 
KA 13 HEM M 1 401 401 HEM HEM . 
LA 11 6PH N 1 401 401 6PH 6PH . 
MA 18 7PH N 1 402 402 7PH 7PH . 
NA 14 8PE Q 1 101 101 8PE 8PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 UQ6 . . . AA 16 123.998 122.442 129.567 1 22.43 ? C1 UQ6 407 C 1 
HETATM 2 C C1M UQ6 . . . AA 16 123.354 121.318 128.746 1 22.43 ? C1M UQ6 407 C 1 
HETATM 3 C C2 UQ6 . . . AA 16 123.332 122.743 130.737 1 22.43 ? C2 UQ6 407 C 1 
HETATM 4 O O2 UQ6 . . . AA 16 122.188 121.99 131.006 1 22.43 ? O2 UQ6 407 C 1 
HETATM 5 C C3 UQ6 . . . AA 16 123.791 123.759 131.582 1 22.43 ? C3 UQ6 407 C 1 
HETATM 6 C C4 UQ6 . . . AA 16 124.953 124.434 131.233 1 22.43 ? C4 UQ6 407 C 1 
HETATM 7 C C5 UQ6 . . . AA 16 125.62 124.133 130.049 1 22.43 ? C5 UQ6 407 C 1 
HETATM 8 O O5 UQ6 . . . AA 16 126.781 124.858 129.74 1 22.43 ? O5 UQ6 407 C 1 
HETATM 9 C C6 UQ6 . . . AA 16 125.16 123.124 129.207 1 22.43 ? C6 UQ6 407 C 1 
HETATM 10 O O3 UQ6 . . . AA 16 123.16 124.11 132.815 1 22.43 ? O3 UQ6 407 C 1 
HETATM 11 C C3M UQ6 . . . AA 16 121.77 124.001 132.964 1 22.43 ? C3M UQ6 407 C 1 
HETATM 12 O O4 UQ6 . . . AA 16 125.479 125.482 132.037 1 22.43 ? O4 UQ6 407 C 1 
HETATM 13 C C4M UQ6 . . . AA 16 125.742 125.27 133.403 1 22.43 ? C4M UQ6 407 C 1 
HETATM 14 C C7 UQ6 . . . AA 16 125.938 122.819 127.882 1 22.43 ? C7 UQ6 407 C 1 
HETATM 15 C C8 UQ6 . . . AA 16 125.178 123.587 126.773 1 22.43 ? C8 UQ6 407 C 1 
HETATM 16 C C9 UQ6 . . . AA 16 125.68 124.559 125.981 1 22.43 ? C9 UQ6 407 C 1 
HETATM 17 C C10 UQ6 . . . AA 16 124.709 125.187 124.972 1 22.43 ? C10 UQ6 407 C 1 
HETATM 18 C C11 UQ6 . . . AA 16 127.143 125.108 125.976 1 22.43 ? C11 UQ6 407 C 1 
HETATM 19 C C12 UQ6 . . . AA 16 127.839 124.676 124.667 1 22.43 ? C12 UQ6 407 C 1 
HETATM 20 C C13 UQ6 . . . AA 16 128.591 125.881 123.949 1 22.43 ? C13 UQ6 407 C 1 
HETATM 21 C C14 UQ6 . . . AA 16 128.162 126.482 122.805 1 22.43 ? C14 UQ6 407 C 1 
HETATM 22 C C15 UQ6 . . . AA 16 126.886 126.09 122.075 1 22.43 ? C15 UQ6 407 C 1 
HETATM 23 C C16 UQ6 . . . AA 16 128.991 127.656 122.152 1 22.43 ? C16 UQ6 407 C 1 
HETATM 24 C C17 UQ6 . . . AA 16 129.683 127.125 120.874 1 22.43 ? C17 UQ6 407 C 1 
HETATM 25 C C18 UQ6 . . . AA 16 130.687 128.222 120.38 1 22.43 ? C18 UQ6 407 C 1 
HETATM 26 C C19 UQ6 . . . AA 16 131.386 128.124 119.229 1 22.43 ? C19 UQ6 407 C 1 
HETATM 27 C C20 UQ6 . . . AA 16 132.328 129.279 118.879 1 22.43 ? C20 UQ6 407 C 1 
HETATM 28 C C21 UQ6 . . . AA 16 131.225 126.869 118.313 1 22.43 ? C21 UQ6 407 C 1 
HETATM 29 C C22 UQ6 . . . AA 16 132.219 126.773 117.099 1 22.43 ? C22 UQ6 407 C 1 
HETATM 30 C C23 UQ6 . . . AA 16 132.76 125.321 116.93 1 22.43 ? C23 UQ6 407 C 1 
HETATM 31 C C24 UQ6 . . . AA 16 133.874 125.035 116.231 1 22.43 ? C24 UQ6 407 C 1 
HETATM 32 C C25 UQ6 . . . AA 16 134.3 123.565 116.148 1 22.43 ? C25 UQ6 407 C 1 
HETATM 33 C C26 UQ6 . . . AA 16 134.716 126.153 115.521 1 22.43 ? C26 UQ6 407 C 1 
HETATM 34 C C27 UQ6 . . . AA 16 136.03 125.662 114.865 1 22.43 ? C27 UQ6 407 C 1 
HETATM 35 C C28 UQ6 . . . AA 16 135.748 125.094 113.45 1 22.43 ? C28 UQ6 407 C 1 
HETATM 36 C C29 UQ6 . . . AA 16 136.354 124.012 112.935 1 22.43 ? C29 UQ6 407 C 1 
HETATM 37 C C30 UQ6 . . . AA 16 137.391 123.189 113.703 1 22.43 ? C30 UQ6 407 C 1 
HETATM 38 C C31 UQ6 . . . AA 16 135.978 123.558 111.503 1 22.43 ? C31 UQ6 407 C 1 
HETATM 39 C C32 UQ6 . . . AA 16 136.893 124.197 110.456 1 22.43 ? C32 UQ6 407 C 1 
HETATM 40 C C33 UQ6 . . . AA 16 138.315 123.57 110.475 1 22.43 ? C33 UQ6 407 C 1 
HETATM 41 C C34 UQ6 . . . AA 16 138.98 123.145 109.397 1 22.43 ? C34 UQ6 407 C 1 
HETATM 42 C C35 UQ6 . . . AA 16 140.378 122.558 109.596 1 22.43 ? C35 UQ6 407 C 1 
HETATM 43 C C36 UQ6 . . . AA 16 138.425 123.191 107.969 1 22.43 ? C36 UQ6 407 C 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           53 
_model_server_stats.create_model_time_ms    73 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#