data_8YHS # _model_server_result.job_id i5vqAn3HnNQlD8bf8D0-5Q _model_server_result.datetime_utc '2024-11-05 08:23:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yhs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8YHS # _exptl.entry_id 8YHS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.514 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,4-dimethyl-6-[6-(oxan-4-yl)-1-[(1~{S})-1-phenylethyl]imidazo[4,5-c]pyridin-2-yl]pyridazin-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YHS _cell.length_a 34.567 _cell.length_b 44.38 _cell.length_c 72.125 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YHS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H27 N5 O2' _chem_comp.formula_weight 429.514 _chem_comp.id A1D6J _chem_comp.mon_nstd_flag . _chem_comp.name 2,4-dimethyl-6-[6-(oxan-4-yl)-1-[(1~{S})-1-phenylethyl]imidazo[4,5-c]pyridin-2-yl]pyridazin-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BRD4 Inhibitor-10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1D6J sing 1 n n C2 C3 A1D6J doub 2 n n C2 C5 A1D6J sing 3 n n C3 C4 A1D6J sing 4 n n C4 N1 A1D6J doub 5 n n C4 C7 A1D6J sing 6 n n N1 N2 A1D6J sing 7 n n N2 C5 A1D6J sing 8 n n N2 C6 A1D6J sing 9 n n C5 O1 A1D6J doub 10 n n C7 N3 A1D6J doub 11 n y C7 N5 A1D6J sing 12 n y N3 C8 A1D6J sing 13 n y C8 C9 A1D6J doub 14 n y C8 C12 A1D6J sing 15 n y C9 N4 A1D6J sing 16 n y N4 C10 A1D6J doub 17 n y C10 C11 A1D6J sing 18 n y C10 C21 A1D6J sing 19 n n C11 C12 A1D6J doub 20 n y C12 N5 A1D6J sing 21 n y N5 C13 A1D6J sing 22 n n C13 C14 A1D6J sing 23 n n C13 C15 A1D6J sing 24 n n C15 C16 A1D6J doub 25 n y C15 C20 A1D6J sing 26 n y C16 C17 A1D6J sing 27 n y C17 C18 A1D6J doub 28 n y C18 C19 A1D6J sing 29 n y C19 C20 A1D6J doub 30 n y C21 C22 A1D6J sing 31 n n C21 C25 A1D6J sing 32 n n C22 C23 A1D6J sing 33 n n C23 O2 A1D6J sing 34 n n O2 C24 A1D6J sing 35 n n C24 C25 A1D6J sing 36 n n C6 H7 A1D6J sing 37 n n C6 H6 A1D6J sing 38 n n C6 H5 A1D6J sing 39 n n C11 H9 A1D6J sing 40 n n C13 H10 A1D6J sing 41 n n C14 H13 A1D6J sing 42 n n C14 H12 A1D6J sing 43 n n C14 H11 A1D6J sing 44 n n C16 H14 A1D6J sing 45 n n C17 H15 A1D6J sing 46 n n C1 H2 A1D6J sing 47 n n C1 H1 A1D6J sing 48 n n C1 H3 A1D6J sing 49 n n C3 H4 A1D6J sing 50 n n C9 H8 A1D6J sing 51 n n C18 H16 A1D6J sing 52 n n C19 H17 A1D6J sing 53 n n C20 H18 A1D6J sing 54 n n C21 H19 A1D6J sing 55 n n C22 H20 A1D6J sing 56 n n C22 H21 A1D6J sing 57 n n C23 H23 A1D6J sing 58 n n C23 H22 A1D6J sing 59 n n C24 H25 A1D6J sing 60 n n C24 H24 A1D6J sing 61 n n C25 H26 A1D6J sing 62 n n C25 H27 A1D6J sing 63 n n # _atom_sites.entry_id 8YHS _atom_sites.fract_transf_matrix[1][1] 0.028929 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1D6J A 1 201 1 A1D6J 574 . C 3 EDO A 1 202 1 EDO EDO . D 4 HOH A 1 301 53 HOH HOH . D 4 HOH A 2 302 100 HOH HOH . D 4 HOH A 3 303 27 HOH HOH . D 4 HOH A 4 304 70 HOH HOH . D 4 HOH A 5 305 56 HOH HOH . D 4 HOH A 6 306 25 HOH HOH . D 4 HOH A 7 307 35 HOH HOH . D 4 HOH A 8 308 55 HOH HOH . D 4 HOH A 9 309 68 HOH HOH . D 4 HOH A 10 310 17 HOH HOH . D 4 HOH A 11 311 104 HOH HOH . D 4 HOH A 12 312 12 HOH HOH . D 4 HOH A 13 313 87 HOH HOH . D 4 HOH A 14 314 116 HOH HOH . D 4 HOH A 15 315 71 HOH HOH . D 4 HOH A 16 316 86 HOH HOH . D 4 HOH A 17 317 1 HOH HOH . D 4 HOH A 18 318 64 HOH HOH . D 4 HOH A 19 319 82 HOH HOH . D 4 HOH A 20 320 45 HOH HOH . D 4 HOH A 21 321 8 HOH HOH . D 4 HOH A 22 322 29 HOH HOH . D 4 HOH A 23 323 38 HOH HOH . D 4 HOH A 24 324 21 HOH HOH . D 4 HOH A 25 325 60 HOH HOH . D 4 HOH A 26 326 63 HOH HOH . D 4 HOH A 27 327 4 HOH HOH . D 4 HOH A 28 328 36 HOH HOH . D 4 HOH A 29 329 22 HOH HOH . D 4 HOH A 30 330 10 HOH HOH . D 4 HOH A 31 331 13 HOH HOH . D 4 HOH A 32 332 73 HOH HOH . D 4 HOH A 33 333 30 HOH HOH . D 4 HOH A 34 334 44 HOH HOH . D 4 HOH A 35 335 102 HOH HOH . D 4 HOH A 36 336 41 HOH HOH . D 4 HOH A 37 337 108 HOH HOH . D 4 HOH A 38 338 7 HOH HOH . D 4 HOH A 39 339 2 HOH HOH . D 4 HOH A 40 340 46 HOH HOH . D 4 HOH A 41 341 59 HOH HOH . D 4 HOH A 42 342 47 HOH HOH . D 4 HOH A 43 343 6 HOH HOH . D 4 HOH A 44 344 5 HOH HOH . D 4 HOH A 45 345 112 HOH HOH . D 4 HOH A 46 346 81 HOH HOH . D 4 HOH A 47 347 62 HOH HOH . D 4 HOH A 48 348 99 HOH HOH . D 4 HOH A 49 349 57 HOH HOH . D 4 HOH A 50 350 77 HOH HOH . D 4 HOH A 51 351 40 HOH HOH . D 4 HOH A 52 352 9 HOH HOH . D 4 HOH A 53 353 90 HOH HOH . D 4 HOH A 54 354 79 HOH HOH . D 4 HOH A 55 355 84 HOH HOH . D 4 HOH A 56 356 109 HOH HOH . D 4 HOH A 57 357 94 HOH HOH . D 4 HOH A 58 358 31 HOH HOH . D 4 HOH A 59 359 85 HOH HOH . D 4 HOH A 60 360 3 HOH HOH . D 4 HOH A 61 361 106 HOH HOH . D 4 HOH A 62 362 15 HOH HOH . D 4 HOH A 63 363 34 HOH HOH . D 4 HOH A 64 364 88 HOH HOH . D 4 HOH A 65 365 50 HOH HOH . D 4 HOH A 66 366 76 HOH HOH . D 4 HOH A 67 367 93 HOH HOH . D 4 HOH A 68 368 18 HOH HOH . D 4 HOH A 69 369 11 HOH HOH . D 4 HOH A 70 370 43 HOH HOH . D 4 HOH A 71 371 58 HOH HOH . D 4 HOH A 72 372 14 HOH HOH . D 4 HOH A 73 373 20 HOH HOH . D 4 HOH A 74 374 26 HOH HOH . D 4 HOH A 75 375 28 HOH HOH . D 4 HOH A 76 376 98 HOH HOH . D 4 HOH A 77 377 65 HOH HOH . D 4 HOH A 78 378 32 HOH HOH . D 4 HOH A 79 379 16 HOH HOH . D 4 HOH A 80 380 49 HOH HOH . D 4 HOH A 81 381 101 HOH HOH . D 4 HOH A 82 382 75 HOH HOH . D 4 HOH A 83 383 95 HOH HOH . D 4 HOH A 84 384 37 HOH HOH . D 4 HOH A 85 385 23 HOH HOH . D 4 HOH A 86 386 89 HOH HOH . D 4 HOH A 87 387 80 HOH HOH . D 4 HOH A 88 388 103 HOH HOH . D 4 HOH A 89 389 111 HOH HOH . D 4 HOH A 90 390 54 HOH HOH . D 4 HOH A 91 391 115 HOH HOH . D 4 HOH A 92 392 24 HOH HOH . D 4 HOH A 93 393 61 HOH HOH . D 4 HOH A 94 394 51 HOH HOH . D 4 HOH A 95 395 113 HOH HOH . D 4 HOH A 96 396 19 HOH HOH . D 4 HOH A 97 397 42 HOH HOH . D 4 HOH A 98 398 74 HOH HOH . D 4 HOH A 99 399 66 HOH HOH . D 4 HOH A 100 400 52 HOH HOH . D 4 HOH A 101 401 91 HOH HOH . D 4 HOH A 102 402 92 HOH HOH . D 4 HOH A 103 403 114 HOH HOH . D 4 HOH A 104 404 69 HOH HOH . D 4 HOH A 105 405 78 HOH HOH . D 4 HOH A 106 406 48 HOH HOH . D 4 HOH A 107 407 105 HOH HOH . D 4 HOH A 108 408 107 HOH HOH . D 4 HOH A 109 409 67 HOH HOH . D 4 HOH A 110 410 97 HOH HOH . D 4 HOH A 111 411 110 HOH HOH . D 4 HOH A 112 412 96 HOH HOH . D 4 HOH A 113 413 72 HOH HOH . D 4 HOH A 114 414 39 HOH HOH . D 4 HOH A 115 415 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1D6J . A . B 2 -9.182 4.568 -1.416 0.5 15.87 0 N1 A1D6J 201 A 1 HETATM 2 N N1 A1D6J . B . B 2 -9.296 4.6 -1.346 0.5 16.09 0 N1 A1D6J 201 A 1 HETATM 3 O O1 A1D6J . A . B 2 -8.532 1.124 -1.8 0.5 14.75 0 O1 A1D6J 201 A 1 HETATM 4 O O1 A1D6J . B . B 2 -8.547 1.171 -1.769 0.5 15.2 0 O1 A1D6J 201 A 1 HETATM 5 C C2 A1D6J . A . B 2 -7.75 2.571 -0.096 0.5 14.99 0 C2 A1D6J 201 A 1 HETATM 6 C C2 A1D6J . B . B 2 -7.713 2.65 -0.124 0.5 15.56 0 C2 A1D6J 201 A 1 HETATM 7 N N3 A1D6J . A . B 2 -8.521 6.624 1.34 0.5 13.72 0 N3 A1D6J 201 A 1 HETATM 8 N N3 A1D6J . B . B 2 -8.556 6.593 1.429 0.5 14.63 0 N3 A1D6J 201 A 1 HETATM 9 C C4 A1D6J . A . B 2 -8.467 4.859 -0.353 0.5 14.99 0 C4 A1D6J 201 A 1 HETATM 10 C C4 A1D6J . B . B 2 -8.528 4.918 -0.324 0.5 15.44 0 C4 A1D6J 201 A 1 HETATM 11 C C5 A1D6J . A . B 2 -8.504 2.254 -1.278 0.5 15.02 0 C5 A1D6J 201 A 1 HETATM 12 C C5 A1D6J . B . B 2 -8.531 2.305 -1.253 0.5 15.39 0 C5 A1D6J 201 A 1 HETATM 13 C C6 A1D6J . A . B 2 -10.035 3.045 -3.055 0.5 17.12 0 C6 A1D6J 201 A 1 HETATM 14 C C6 A1D6J . B . B 2 -10.199 3.029 -2.928 0.5 16.82 0 C6 A1D6J 201 A 1 HETATM 15 C C8 A1D6J . A . B 2 -8.576 8.014 1.3 0.5 13.4 0 C8 A1D6J 201 A 1 HETATM 16 C C8 A1D6J . B . B 2 -8.557 7.983 1.505 0.5 14.61 0 C8 A1D6J 201 A 1 HETATM 17 C C10 A1D6J . A . B 2 -8.628 10.667 0.731 0.5 15 0 C10 A1D6J 201 A 1 HETATM 18 C C10 A1D6J . B . B 2 -8.502 10.686 1.156 0.5 17.21 0 C10 A1D6J 201 A 1 HETATM 19 C C11 A1D6J . A . B 2 -8.578 9.783 -0.331 0.5 14.71 0 C11 A1D6J 201 A 1 HETATM 20 C C11 A1D6J . B . B 2 -8.456 9.878 0.033 0.5 15.91 0 C11 A1D6J 201 A 1 HETATM 21 C C12 A1D6J . A . B 2 -8.553 8.432 -0.026 0.5 14.39 0 C12 A1D6J 201 A 1 HETATM 22 C C12 A1D6J . B . B 2 -8.488 8.504 0.219 0.5 15.32 0 C12 A1D6J 201 A 1 HETATM 23 C C13 A1D6J . A . B 2 -8.429 7.311 -2.253 0.5 16.68 0 C13 A1D6J 201 A 1 HETATM 24 C C13 A1D6J . B . B 2 -8.364 7.505 -2.104 0.5 16.63 0 C13 A1D6J 201 A 1 HETATM 25 C C14 A1D6J . A . B 2 -9.687 7.925 -2.863 0.5 17.52 0 C14 A1D6J 201 A 1 HETATM 26 C C14 A1D6J . B . B 2 -9.628 8.091 -2.732 0.5 17.72 0 C14 A1D6J 201 A 1 HETATM 27 C C15 A1D6J . A . B 2 -7.134 7.971 -2.705 0.5 18.67 0 C15 A1D6J 201 A 1 HETATM 28 C C15 A1D6J . B . B 2 -7.083 8.227 -2.501 0.5 18.01 0 C15 A1D6J 201 A 1 HETATM 29 C C16 A1D6J . A . B 2 -7.102 8.874 -3.759 0.5 19.7 0 C16 A1D6J 201 A 1 HETATM 30 C C16 A1D6J . B . B 2 -7.091 9.481 -3.099 0.5 17.9 0 C16 A1D6J 201 A 1 HETATM 31 C C17 A1D6J . A . B 2 -5.906 9.455 -4.16 0.5 20.59 0 C17 A1D6J 201 A 1 HETATM 32 C C17 A1D6J . B . B 2 -5.903 10.096 -3.472 0.5 18.34 0 C17 A1D6J 201 A 1 HETATM 33 C C1 A1D6J . A . B 2 -6.969 1.486 0.6 0.5 14.82 0 C1 A1D6J 201 A 1 HETATM 34 C C1 A1D6J . B . B 2 -6.851 1.592 0.519 0.5 15.65 0 C1 A1D6J 201 A 1 HETATM 35 C C3 A1D6J . A . B 2 -7.744 3.891 0.343 0.5 14.91 0 C3 A1D6J 201 A 1 HETATM 36 C C3 A1D6J . B . B 2 -7.726 3.969 0.315 0.5 15.45 0 C3 A1D6J 201 A 1 HETATM 37 N N2 A1D6J . A . B 2 -9.217 3.278 -1.857 0.5 15.54 0 N2 A1D6J 201 A 1 HETATM 38 N N2 A1D6J . B . B 2 -9.315 3.302 -1.785 0.5 15.59 0 N2 A1D6J 201 A 1 HETATM 39 C C7 A1D6J . A . B 2 -8.497 6.251 0.074 0.5 14.55 0 C7 A1D6J 201 A 1 HETATM 40 C C7 A1D6J . B . B 2 -8.54 6.306 0.139 0.5 15.2 0 C7 A1D6J 201 A 1 HETATM 41 C C9 A1D6J . A . B 2 -8.625 8.956 2.303 0.5 14.84 0 C9 A1D6J 201 A 1 HETATM 42 C C9 A1D6J . B . B 2 -8.587 8.847 2.585 0.5 16.1 0 C9 A1D6J 201 A 1 HETATM 43 N N4 A1D6J . A . B 2 -8.681 10.256 2.007 0.5 13.98 0 N4 A1D6J 201 A 1 HETATM 44 N N4 A1D6J . B . B 2 -8.583 10.173 2.398 0.5 16.33 0 N4 A1D6J 201 A 1 HETATM 45 N N5 A1D6J . A . B 2 -8.504 7.305 -0.796 0.5 14.69 0 N5 A1D6J 201 A 1 HETATM 46 N N5 A1D6J . B . B 2 -8.477 7.431 -0.65 0.5 15.23 0 N5 A1D6J 201 A 1 HETATM 47 C C18 A1D6J . A . B 2 -4.725 9.125 -3.536 0.5 20.32 0 C18 A1D6J 201 A 1 HETATM 48 C C18 A1D6J . B . B 2 -4.697 9.463 -3.255 0.5 19.05 0 C18 A1D6J 201 A 1 HETATM 49 C C19 A1D6J . A . B 2 -4.743 8.234 -2.489 0.5 20.64 0 C19 A1D6J 201 A 1 HETATM 50 C C19 A1D6J . B . B 2 -4.677 8.224 -2.661 0.5 19.4 0 C19 A1D6J 201 A 1 HETATM 51 C C20 A1D6J . A . B 2 -5.942 7.67 -2.07 0.5 19.03 0 C20 A1D6J 201 A 1 HETATM 52 C C20 A1D6J . B . B 2 -5.866 7.613 -2.284 0.5 18.27 0 C20 A1D6J 201 A 1 HETATM 53 C C21 A1D6J . A . B 2 -8.691 12.166 0.516 0.5 16.6 0 C21 A1D6J 201 A 1 HETATM 54 C C21 A1D6J . B . B 2 -8.449 12.2 1.026 0.5 19.98 0 C21 A1D6J 201 A 1 HETATM 55 C C22 A1D6J . A . B 2 -10.039 12.674 1.031 0.5 18.88 0 C22 A1D6J 201 A 1 HETATM 56 C C22 A1D6J . B . B 2 -9.846 12.788 0.827 0.5 22.86 0 C22 A1D6J 201 A 1 HETATM 57 C C23 A1D6J . A . B 2 -10.113 14.17 0.867 0.5 18.78 0 C23 A1D6J 201 A 1 HETATM 58 C C23 A1D6J . B . B 2 -9.769 14.279 0.607 0.5 23.48 0 C23 A1D6J 201 A 1 HETATM 59 O O2 A1D6J . A . B 2 -9.04 14.818 1.548 0.5 17.56 0 O2 A1D6J 201 A 1 HETATM 60 O O2 A1D6J . B . B 2 -8.911 14.621 -0.479 0.5 21.46 0 O2 A1D6J 201 A 1 HETATM 61 C C24 A1D6J . A . B 2 -7.778 14.425 1.029 0.5 16.03 0 C24 A1D6J 201 A 1 HETATM 62 C C24 A1D6J . B . B 2 -7.58 14.184 -0.234 0.5 20.79 0 C24 A1D6J 201 A 1 HETATM 63 C C25 A1D6J . A . B 2 -7.569 12.939 1.213 0.5 17.32 0 C25 A1D6J 201 A 1 HETATM 64 C C25 A1D6J . B . B 2 -7.544 12.678 -0.118 0.5 20.14 0 C25 A1D6J 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 64 #