data_8YIM # _model_server_result.job_id WBFAWAxe61ecnKhlKhnxKQ _model_server_result.datetime_utc '2024-12-05 04:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8YIM # _exptl.entry_id 8YIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8YIM _cell.length_a 60.523 _cell.length_b 60.523 _cell.length_c 93.92 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 23 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A OG1 THR 36 A THR 41 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 B O1G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc6 C MG MG . A MG 202 1_555 D O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8YIM _atom_sites.fract_transf_matrix[1][1] 0.016523 _atom_sites.fract_transf_matrix[1][2] 0.009539 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 201 GNP LIG . C 3 MG A 1 202 1 MG MG . D 4 HOH A 1 301 77 HOH HOH . D 4 HOH A 2 302 64 HOH HOH . D 4 HOH A 3 303 124 HOH HOH . D 4 HOH A 4 304 57 HOH HOH . D 4 HOH A 5 305 150 HOH HOH . D 4 HOH A 6 306 93 HOH HOH . D 4 HOH A 7 307 99 HOH HOH . D 4 HOH A 8 308 111 HOH HOH . D 4 HOH A 9 309 70 HOH HOH . D 4 HOH A 10 310 165 HOH HOH . D 4 HOH A 11 311 31 HOH HOH . D 4 HOH A 12 312 193 HOH HOH . D 4 HOH A 13 313 8 HOH HOH . D 4 HOH A 14 314 148 HOH HOH . D 4 HOH A 15 315 122 HOH HOH . D 4 HOH A 16 316 174 HOH HOH . D 4 HOH A 17 317 56 HOH HOH . D 4 HOH A 18 318 89 HOH HOH . D 4 HOH A 19 319 12 HOH HOH . D 4 HOH A 20 320 203 HOH HOH . D 4 HOH A 21 321 9 HOH HOH . D 4 HOH A 22 322 13 HOH HOH . D 4 HOH A 23 323 16 HOH HOH . D 4 HOH A 24 324 6 HOH HOH . D 4 HOH A 25 325 112 HOH HOH . D 4 HOH A 26 326 95 HOH HOH . D 4 HOH A 27 327 131 HOH HOH . D 4 HOH A 28 328 3 HOH HOH . D 4 HOH A 29 329 58 HOH HOH . D 4 HOH A 30 330 22 HOH HOH . D 4 HOH A 31 331 146 HOH HOH . D 4 HOH A 32 332 2 HOH HOH . D 4 HOH A 33 333 38 HOH HOH . D 4 HOH A 34 334 97 HOH HOH . D 4 HOH A 35 335 84 HOH HOH . D 4 HOH A 36 336 11 HOH HOH . D 4 HOH A 37 337 18 HOH HOH . D 4 HOH A 38 338 43 HOH HOH . D 4 HOH A 39 339 128 HOH HOH . D 4 HOH A 40 340 36 HOH HOH . D 4 HOH A 41 341 118 HOH HOH . D 4 HOH A 42 342 82 HOH HOH . D 4 HOH A 43 343 68 HOH HOH . D 4 HOH A 44 344 32 HOH HOH . D 4 HOH A 45 345 62 HOH HOH . D 4 HOH A 46 346 26 HOH HOH . D 4 HOH A 47 347 173 HOH HOH . D 4 HOH A 48 348 69 HOH HOH . D 4 HOH A 49 349 44 HOH HOH . D 4 HOH A 50 350 7 HOH HOH . D 4 HOH A 51 351 147 HOH HOH . D 4 HOH A 52 352 5 HOH HOH . D 4 HOH A 53 353 28 HOH HOH . D 4 HOH A 54 354 164 HOH HOH . D 4 HOH A 55 355 48 HOH HOH . D 4 HOH A 56 356 171 HOH HOH . D 4 HOH A 57 357 152 HOH HOH . D 4 HOH A 58 358 219 HOH HOH . D 4 HOH A 59 359 157 HOH HOH . D 4 HOH A 60 360 159 HOH HOH . D 4 HOH A 61 361 74 HOH HOH . D 4 HOH A 62 362 92 HOH HOH . D 4 HOH A 63 363 42 HOH HOH . D 4 HOH A 64 364 54 HOH HOH . D 4 HOH A 65 365 52 HOH HOH . D 4 HOH A 66 366 101 HOH HOH . D 4 HOH A 67 367 130 HOH HOH . D 4 HOH A 68 368 19 HOH HOH . D 4 HOH A 69 369 191 HOH HOH . D 4 HOH A 70 370 4 HOH HOH . D 4 HOH A 71 371 1 HOH HOH . D 4 HOH A 72 372 41 HOH HOH . D 4 HOH A 73 373 24 HOH HOH . D 4 HOH A 74 374 47 HOH HOH . D 4 HOH A 75 375 154 HOH HOH . D 4 HOH A 76 376 88 HOH HOH . D 4 HOH A 77 377 49 HOH HOH . D 4 HOH A 78 378 72 HOH HOH . D 4 HOH A 79 379 166 HOH HOH . D 4 HOH A 80 380 160 HOH HOH . D 4 HOH A 81 381 39 HOH HOH . D 4 HOH A 82 382 135 HOH HOH . D 4 HOH A 83 383 17 HOH HOH . D 4 HOH A 84 384 53 HOH HOH . D 4 HOH A 85 385 20 HOH HOH . D 4 HOH A 86 386 37 HOH HOH . D 4 HOH A 87 387 162 HOH HOH . D 4 HOH A 88 388 65 HOH HOH . D 4 HOH A 89 389 60 HOH HOH . D 4 HOH A 90 390 25 HOH HOH . D 4 HOH A 91 391 15 HOH HOH . D 4 HOH A 92 392 115 HOH HOH . D 4 HOH A 93 393 156 HOH HOH . D 4 HOH A 94 394 94 HOH HOH . D 4 HOH A 95 395 121 HOH HOH . D 4 HOH A 96 396 50 HOH HOH . D 4 HOH A 97 397 10 HOH HOH . D 4 HOH A 98 398 169 HOH HOH . D 4 HOH A 99 399 178 HOH HOH . D 4 HOH A 100 400 23 HOH HOH . D 4 HOH A 101 401 46 HOH HOH . D 4 HOH A 102 402 136 HOH HOH . D 4 HOH A 103 403 45 HOH HOH . D 4 HOH A 104 404 113 HOH HOH . D 4 HOH A 105 405 100 HOH HOH . D 4 HOH A 106 406 155 HOH HOH . D 4 HOH A 107 407 96 HOH HOH . D 4 HOH A 108 408 76 HOH HOH . D 4 HOH A 109 409 105 HOH HOH . D 4 HOH A 110 410 86 HOH HOH . D 4 HOH A 111 411 108 HOH HOH . D 4 HOH A 112 412 210 HOH HOH . D 4 HOH A 113 413 132 HOH HOH . D 4 HOH A 114 414 66 HOH HOH . D 4 HOH A 115 415 151 HOH HOH . D 4 HOH A 116 416 168 HOH HOH . D 4 HOH A 117 417 117 HOH HOH . D 4 HOH A 118 418 27 HOH HOH . D 4 HOH A 119 419 14 HOH HOH . D 4 HOH A 120 420 176 HOH HOH . D 4 HOH A 121 421 140 HOH HOH . D 4 HOH A 122 422 109 HOH HOH . D 4 HOH A 123 423 204 HOH HOH . D 4 HOH A 124 424 33 HOH HOH . D 4 HOH A 125 425 102 HOH HOH . D 4 HOH A 126 426 63 HOH HOH . D 4 HOH A 127 427 21 HOH HOH . D 4 HOH A 128 428 116 HOH HOH . D 4 HOH A 129 429 153 HOH HOH . D 4 HOH A 130 430 29 HOH HOH . D 4 HOH A 131 431 35 HOH HOH . D 4 HOH A 132 432 34 HOH HOH . D 4 HOH A 133 433 110 HOH HOH . D 4 HOH A 134 434 90 HOH HOH . D 4 HOH A 135 435 123 HOH HOH . D 4 HOH A 136 436 107 HOH HOH . D 4 HOH A 137 437 78 HOH HOH . D 4 HOH A 138 438 73 HOH HOH . D 4 HOH A 139 439 51 HOH HOH . D 4 HOH A 140 440 67 HOH HOH . D 4 HOH A 141 441 215 HOH HOH . D 4 HOH A 142 442 30 HOH HOH . D 4 HOH A 143 443 197 HOH HOH . D 4 HOH A 144 444 134 HOH HOH . D 4 HOH A 145 445 200 HOH HOH . D 4 HOH A 146 446 184 HOH HOH . D 4 HOH A 147 447 194 HOH HOH . D 4 HOH A 148 448 213 HOH HOH . D 4 HOH A 149 449 91 HOH HOH . D 4 HOH A 150 450 103 HOH HOH . D 4 HOH A 151 451 119 HOH HOH . D 4 HOH A 152 452 179 HOH HOH . D 4 HOH A 153 453 143 HOH HOH . D 4 HOH A 154 454 211 HOH HOH . D 4 HOH A 155 455 75 HOH HOH . D 4 HOH A 156 456 106 HOH HOH . D 4 HOH A 157 457 40 HOH HOH . D 4 HOH A 158 458 161 HOH HOH . D 4 HOH A 159 459 202 HOH HOH . D 4 HOH A 160 460 141 HOH HOH . D 4 HOH A 161 461 129 HOH HOH . D 4 HOH A 162 462 163 HOH HOH . D 4 HOH A 163 463 139 HOH HOH . D 4 HOH A 164 464 186 HOH HOH . D 4 HOH A 165 465 192 HOH HOH . D 4 HOH A 166 466 189 HOH HOH . D 4 HOH A 167 467 81 HOH HOH . D 4 HOH A 168 468 188 HOH HOH . D 4 HOH A 169 469 85 HOH HOH . D 4 HOH A 170 470 142 HOH HOH . D 4 HOH A 171 471 185 HOH HOH . D 4 HOH A 172 472 175 HOH HOH . D 4 HOH A 173 473 144 HOH HOH . D 4 HOH A 174 474 190 HOH HOH . D 4 HOH A 175 475 133 HOH HOH . D 4 HOH A 176 476 126 HOH HOH . D 4 HOH A 177 477 71 HOH HOH . D 4 HOH A 178 478 212 HOH HOH . D 4 HOH A 179 479 120 HOH HOH . D 4 HOH A 180 480 114 HOH HOH . D 4 HOH A 181 481 198 HOH HOH . D 4 HOH A 182 482 87 HOH HOH . D 4 HOH A 183 483 214 HOH HOH . D 4 HOH A 184 484 199 HOH HOH . D 4 HOH A 185 485 218 HOH HOH . D 4 HOH A 186 486 59 HOH HOH . D 4 HOH A 187 487 61 HOH HOH . D 4 HOH A 188 488 104 HOH HOH . D 4 HOH A 189 489 207 HOH HOH . D 4 HOH A 190 490 181 HOH HOH . D 4 HOH A 191 491 195 HOH HOH . D 4 HOH A 192 492 80 HOH HOH . D 4 HOH A 193 493 145 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -34.051 _atom_site.Cartn_y 7.14 _atom_site.Cartn_z 1.169 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #