data_8YIN
#
_model_server_result.job_id            TWneojAnRD7CtKct7hlkDg 
_model_server_result.datetime_utc      '2024-12-26 13:11:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yin 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":101}' 
#
_entry.id    8YIN 
#
_exptl.entry_id    8YIN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              691.959 
_entity.id                          18 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YIN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YIN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 EA N N 
? 18 MA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 134 E CYS 164 1_555 E SG CYS 150 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
disulf ? disulf2 O SG CYS 134 P CYS 164 1_555 O SG CYS 150 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc1 B NE2 HIS 82 C HIS 82 1_555 X FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc2 B NE2 HIS 96 C HIS 96 1_555 Y FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc3 B NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc4 B NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 CA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc6 G NE2 HIS 82 N HIS 82 1_555 JA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
metalc ? metalc7 G NE2 HIS 96 N HIS 96 1_555 GA FE HEM . N HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc8 G NE2 HIS 183 N HIS 183 1_555 JA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc9 G NE2 HIS 197 N HIS 197 1_555 GA FE HEM . N HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc10 M NE2 HIS 44 O HIS 105 1_555 LA FE HEM . O HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
#
_chem_comp.formula           'C37 H74 N O8 P' 
_chem_comp.formula_weight    691.959 
_chem_comp.id                8PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLETHANOLAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P 8PE doub 101 n n 
O11 P 8PE sing 102 n n 
P O14 8PE sing 103 n n 
P O13 8PE sing 104 n n 
C12 N 8PE sing 105 n n 
N HN 8PE sing 106 n n 
N HNA 8PE sing 107 n n 
O11 C1 8PE sing 108 n n 
O13 C11 8PE sing 109 n n 
O14 HO14 8PE sing 110 n n 
C12 C11 8PE sing 111 n n 
C11 H11 8PE sing 112 n n 
C11 H11A 8PE sing 113 n n 
C12 H12 8PE sing 114 n n 
C12 H12A 8PE sing 115 n n 
C2 C1 8PE sing 116 n n 
C1 H1 8PE sing 117 n n 
C1 H1A 8PE sing 118 n n 
C3 C2 8PE sing 119 n n 
C2 O21 8PE sing 120 n n 
C2 H2 8PE sing 121 n n 
O31 C3 8PE sing 122 n n 
C3 H3 8PE sing 123 n n 
C3 H3A 8PE sing 124 n n 
C31 O31 8PE sing 125 n n 
O32 C31 8PE doub 126 n n 
C32 C31 8PE sing 127 n n 
C32 C33 8PE sing 128 n n 
C32 H32 8PE sing 129 n n 
C32 H32A 8PE sing 130 n n 
C33 C34 8PE sing 131 n n 
C33 H33 8PE sing 132 n n 
C33 H33A 8PE sing 133 n n 
C35 C34 8PE sing 134 n n 
C34 H34 8PE sing 135 n n 
C34 H34A 8PE sing 136 n n 
C35 C36 8PE sing 137 n n 
C35 H35 8PE sing 138 n n 
C35 H35A 8PE sing 139 n n 
C37 C36 8PE sing 140 n n 
C36 H36 8PE sing 141 n n 
C36 H36A 8PE sing 142 n n 
C38 C37 8PE sing 143 n n 
C37 H37 8PE sing 144 n n 
C37 H37A 8PE sing 145 n n 
C39 C38 8PE sing 146 n n 
C38 H38 8PE sing 147 n n 
C38 H38A 8PE sing 148 n n 
C39 C3A 8PE sing 149 n n 
C39 H39 8PE sing 150 n n 
C39 H39A 8PE sing 151 n n 
C3B C3A 8PE sing 152 n n 
C3A H3AA 8PE sing 153 n n 
C3A H3AB 8PE sing 154 n n 
C3C C3B 8PE sing 155 n n 
C3B H3B 8PE sing 156 n n 
C3B H3BA 8PE sing 157 n n 
C3C C3D 8PE sing 158 n n 
C3C H3C 8PE sing 159 n n 
C3C H3CA 8PE sing 160 n n 
C3E C3D 8PE sing 161 n n 
C3D H3D 8PE sing 162 n n 
C3D H3DA 8PE sing 163 n n 
C3F C3E 8PE sing 164 n n 
C3E H3E 8PE sing 165 n n 
C3E H3EA 8PE sing 166 n n 
C3G C3F 8PE sing 167 n n 
C3F H3F 8PE sing 168 n n 
C3F H3FA 8PE sing 169 n n 
C3G C3H 8PE sing 170 n n 
C3G H3G 8PE sing 171 n n 
C3G H3GA 8PE sing 172 n n 
C3I C3H 8PE sing 173 n n 
C3H H3H 8PE sing 174 n n 
C3H H3HA 8PE sing 175 n n 
C3I H3I 8PE sing 176 n n 
C3I H3IA 8PE sing 177 n n 
C3I H3IB 8PE sing 178 n n 
O21 C21 8PE sing 179 n n 
C21 O22 8PE doub 180 n n 
C21 C22 8PE sing 181 n n 
C23 C22 8PE sing 182 n n 
C22 H22 8PE sing 183 n n 
C22 H22A 8PE sing 184 n n 
C23 C24 8PE sing 185 n n 
C23 H23 8PE sing 186 n n 
C23 H23A 8PE sing 187 n n 
C25 C24 8PE sing 188 n n 
C24 H24 8PE sing 189 n n 
C24 H24A 8PE sing 190 n n 
C25 C26 8PE sing 191 n n 
C25 H25 8PE sing 192 n n 
C25 H25A 8PE sing 193 n n 
C27 C26 8PE sing 194 n n 
C26 H26 8PE sing 195 n n 
C26 H26A 8PE sing 196 n n 
C27 C28 8PE sing 197 n n 
C27 H27 8PE sing 198 n n 
C27 H27A 8PE sing 199 n n 
C29 C28 8PE sing 200 n n 
C28 H28 8PE sing 201 n n 
C28 H28A 8PE sing 202 n n 
C29 C2A 8PE sing 203 n n 
C29 H29 8PE sing 204 n n 
C29 H29A 8PE sing 205 n n 
C2B C2A 8PE sing 206 n n 
C2A H2A 8PE sing 207 n n 
C2A H2AA 8PE sing 208 n n 
C2C C2B 8PE sing 209 n n 
C2B H2B 8PE sing 210 n n 
C2B H2BA 8PE sing 211 n n 
C2C C2D 8PE sing 212 n n 
C2C H2C 8PE sing 213 n n 
C2C H2CA 8PE sing 214 n n 
C2E C2D 8PE sing 215 n n 
C2D H2D 8PE sing 216 n n 
C2D H2DA 8PE sing 217 n n 
C2E H2E 8PE sing 218 n n 
C2E H2EA 8PE sing 219 n n 
C2E H2EB 8PE sing 220 n n 
#
_atom_sites.entry_id                     8YIN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 6PH A 1 501 501 6PH 6PH . 
V 12 CN3 C 1 401 401 CN3 CN3 . 
W 13 9PE C 1 402 402 9PE 9PE . 
X 14 HEM C 1 403 403 HEM HEM . 
Y 14 HEM C 1 404 404 HEM HEM . 
Z 15 CN5 C 1 405 405 CN5 CN5 . 
AA 16 UQ6 C 1 406 406 UQ6 UQ6 . 
BA 17 A1D6O C 1 407 407 A1D6O A1D . 
CA 14 HEM D 1 401 401 HEM HEM . 
DA 11 6PH E 1 301 301 6PH 6PH . 
EA 18 8PE H 1 101 101 8PE 8PE . 
FA 12 CN3 N 1 401 404 CN3 CN3 . 
GA 14 HEM N 1 402 405 HEM HEM . 
HA 16 UQ6 N 1 403 401 UQ6 UQ6 . 
IA 13 9PE N 1 404 402 9PE 9PE . 
JA 14 HEM N 1 405 403 HEM HEM . 
KA 17 A1D6O N 1 406 406 A1D6O A1D . 
LA 14 HEM O 1 401 401 HEM HEM . 
MA 18 8PE S 1 101 101 8PE 8PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 8PE . . . EA 18 120.455 142.289 152.449 1 46.42 ? P 8PE 101 H 1 
HETATM 2 N N 8PE . . . EA 18 118.336 141.621 156.294 1 46.42 ? N 8PE 101 H 1 
HETATM 3 O O11 8PE . . . EA 18 120.131 143.402 151.282 1 46.42 ? O11 8PE 101 H 1 
HETATM 4 O O12 8PE . . . EA 18 121.111 142.978 153.618 1 46.42 ? O12 8PE 101 H 1 
HETATM 5 O O13 8PE . . . EA 18 119.056 141.583 152.949 1 46.42 ? O13 8PE 101 H 1 
HETATM 6 O O14 8PE . . . EA 18 121.386 141.237 151.9 1 46.42 ? O14 8PE 101 H 1 
HETATM 7 C C11 8PE . . . EA 18 119.082 140.817 154.118 1 46.42 ? C11 8PE 101 H 1 
HETATM 8 C C12 8PE . . . EA 18 117.88 141.175 154.989 1 46.42 ? C12 8PE 101 H 1 
HETATM 9 C C1 8PE . . . EA 18 121.223 144.004 150.653 1 46.42 ? C1 8PE 101 H 1 
HETATM 10 C C2 8PE . . . EA 18 120.761 144.751 149.41 1 46.42 ? C2 8PE 101 H 1 
HETATM 11 C C3 8PE . . . EA 18 121.627 145.992 149.256 1 46.42 ? C3 8PE 101 H 1 
HETATM 12 O O31 8PE . . . EA 18 122.968 145.622 149.131 1 46.42 ? O31 8PE 101 H 1 
HETATM 13 O O32 8PE . . . EA 18 124.82 146.819 148.74 1 46.42 ? O32 8PE 101 H 1 
HETATM 14 C C31 8PE . . . EA 18 123.738 146.515 148.379 1 46.42 ? C31 8PE 101 H 1 
HETATM 15 C C32 8PE . . . EA 18 123.187 147.111 147.091 1 46.42 ? C32 8PE 101 H 1 
HETATM 16 C C33 8PE . . . EA 18 124.342 147.592 146.227 1 46.42 ? C33 8PE 101 H 1 
HETATM 17 C C34 8PE . . . EA 18 124.279 146.88 144.881 1 46.42 ? C34 8PE 101 H 1 
HETATM 18 C C35 8PE . . . EA 18 122.996 147.248 144.146 1 46.42 ? C35 8PE 101 H 1 
HETATM 19 C C36 8PE . . . EA 18 123.158 146.901 142.67 1 46.42 ? C36 8PE 101 H 1 
HETATM 20 C C37 8PE . . . EA 18 124.168 147.863 142.056 1 46.42 ? C37 8PE 101 H 1 
HETATM 21 C C38 8PE . . . EA 18 124.182 147.708 140.541 1 46.42 ? C38 8PE 101 H 1 
HETATM 22 C C39 8PE . . . EA 18 123.248 148.746 139.93 1 46.42 ? C39 8PE 101 H 1 
HETATM 23 C C3A 8PE . . . EA 18 124.062 149.79 139.178 1 46.42 ? C3A 8PE 101 H 1 
HETATM 24 C C3B 8PE . . . EA 18 123.795 151.158 139.793 1 46.42 ? C3B 8PE 101 H 1 
HETATM 25 C C3C 8PE . . . EA 18 125.085 151.964 139.754 1 46.42 ? C3C 8PE 101 H 1 
HETATM 26 C C3D 8PE . . . EA 18 124.901 153.252 140.543 1 46.42 ? C3D 8PE 101 H 1 
HETATM 27 C C3E 8PE . . . EA 18 126.26 153.924 140.672 1 46.42 ? C3E 8PE 101 H 1 
HETATM 28 C C3F 8PE . . . EA 18 126.266 155.157 139.782 1 46.42 ? C3F 8PE 101 H 1 
HETATM 29 C C3G 8PE . . . EA 18 127.05 156.27 140.46 1 46.42 ? C3G 8PE 101 H 1 
HETATM 30 C C3H 8PE . . . EA 18 127.166 157.449 139.503 1 46.42 ? C3H 8PE 101 H 1 
HETATM 31 C C3I 8PE . . . EA 18 128.492 158.164 139.741 1 46.42 ? C3I 8PE 101 H 1 
HETATM 32 O O21 8PE . . . EA 18 120.931 143.94 148.286 1 46.42 ? O21 8PE 101 H 1 
HETATM 33 O O22 8PE . . . EA 18 118.741 143.44 148.361 1 46.42 ? O22 8PE 101 H 1 
HETATM 34 C C21 8PE . . . EA 18 119.756 143.398 147.752 1 46.42 ? C21 8PE 101 H 1 
HETATM 35 C C22 8PE . . . EA 18 119.789 142.747 146.371 1 46.42 ? C22 8PE 101 H 1 
HETATM 36 C C23 8PE . . . EA 18 119.054 143.649 145.385 1 46.42 ? C23 8PE 101 H 1 
HETATM 37 C C24 8PE . . . EA 18 119.658 143.514 143.989 1 46.42 ? C24 8PE 101 H 1 
HETATM 38 C C25 8PE . . . EA 18 119.211 144.694 143.129 1 46.42 ? C25 8PE 101 H 1 
HETATM 39 C C26 8PE . . . EA 18 119.681 144.485 141.692 1 46.42 ? C26 8PE 101 H 1 
HETATM 40 C C27 8PE . . . EA 18 119.696 145.82 140.955 1 46.42 ? C27 8PE 101 H 1 
HETATM 41 C C28 8PE . . . EA 18 120.826 145.812 139.926 1 46.42 ? C28 8PE 101 H 1 
HETATM 42 C C29 8PE . . . EA 18 120.263 146.022 138.522 1 46.42 ? C29 8PE 101 H 1 
HETATM 43 C C2A 8PE . . . EA 18 121.416 145.988 137.522 1 46.42 ? C2A 8PE 101 H 1 
HETATM 44 C C2B 8PE . . . EA 18 120.877 146.091 136.096 1 46.42 ? C2B 8PE 101 H 1 
HETATM 45 C C2C 8PE . . . EA 18 122.022 145.812 135.124 1 46.42 ? C2C 8PE 101 H 1 
HETATM 46 C C2D 8PE . . . EA 18 121.684 146.353 133.737 1 46.42 ? C2D 8PE 101 H 1 
HETATM 47 C C2E 8PE . . . EA 18 122.964 146.428 132.908 1 46.42 ? C2E 8PE 101 H 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    59 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           47 
#