data_8YIN
#
_model_server_result.job_id            Fh09upR_4Inj-EHmVgy6XA 
_model_server_result.datetime_utc      '2024-12-26 13:25:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yin 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":405}' 
#
_entry.id    8YIN 
#
_exptl.entry_id    8YIN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          14 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YIN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YIN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 14 X N N 
? 14 Y N N 
? 14 CA N N 
? 14 GA N N 
? 14 JA N N 
? 14 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 134 E CYS 164 1_555 E SG CYS 150 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
disulf ? disulf2 O SG CYS 134 P CYS 164 1_555 O SG CYS 150 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc1 B NE2 HIS 82 C HIS 82 1_555 X FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc2 B NE2 HIS 96 C HIS 96 1_555 Y FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc3 B NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? 
metalc ? metalc4 B NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 CA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
metalc ? metalc6 G NE2 HIS 82 N HIS 82 1_555 JA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? 
metalc ? metalc7 G NE2 HIS 96 N HIS 96 1_555 GA FE HEM . N HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc8 G NE2 HIS 183 N HIS 183 1_555 JA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? 
metalc ? metalc9 G NE2 HIS 197 N HIS 197 1_555 GA FE HEM . N HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc10 M NE2 HIS 44 O HIS 105 1_555 LA FE HEM . O HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 711 n n 
CHA C4D HEM doub 712 n n 
CHA HHA HEM sing 713 n n 
CHB C4A HEM sing 714 n n 
CHB C1B HEM doub 715 n n 
CHB HHB HEM sing 716 n n 
CHC C4B HEM sing 717 n n 
CHC C1C HEM doub 718 n n 
CHC HHC HEM sing 719 n n 
CHD C4C HEM doub 720 n n 
CHD C1D HEM sing 721 n n 
CHD HHD HEM sing 722 n n 
C1A C2A HEM doub 723 n y 
C1A NA HEM sing 724 n y 
C2A C3A HEM sing 725 n y 
C2A CAA HEM sing 726 n n 
C3A C4A HEM doub 727 n y 
C3A CMA HEM sing 728 n n 
C4A NA HEM sing 729 n y 
CMA HMA HEM sing 730 n n 
CMA HMAA HEM sing 731 n n 
CMA HMAB HEM sing 732 n n 
CAA CBA HEM sing 733 n n 
CAA HAA HEM sing 734 n n 
CAA HAAA HEM sing 735 n n 
CBA CGA HEM sing 736 n n 
CBA HBA HEM sing 737 n n 
CBA HBAA HEM sing 738 n n 
CGA O1A HEM doub 739 n n 
CGA O2A HEM sing 740 n n 
C1B C2B HEM sing 741 n n 
C1B NB HEM sing 742 n n 
C2B C3B HEM doub 743 n n 
C2B CMB HEM sing 744 n n 
C3B C4B HEM sing 745 n n 
C3B CAB HEM sing 746 n n 
C4B NB HEM doub 747 n n 
CMB HMB HEM sing 748 n n 
CMB HMBA HEM sing 749 n n 
CMB HMBB HEM sing 750 n n 
CAB CBB HEM doub 751 n n 
CAB HAB HEM sing 752 n n 
CBB HBB HEM sing 753 n n 
CBB HBBA HEM sing 754 n n 
C1C C2C HEM sing 755 n y 
C1C NC HEM sing 756 n y 
C2C C3C HEM doub 757 n y 
C2C CMC HEM sing 758 n n 
C3C C4C HEM sing 759 n y 
C3C CAC HEM sing 760 n n 
C4C NC HEM sing 761 n y 
CMC HMC HEM sing 762 n n 
CMC HMCA HEM sing 763 n n 
CMC HMCB HEM sing 764 n n 
CAC CBC HEM doub 765 n n 
CAC HAC HEM sing 766 n n 
CBC HBC HEM sing 767 n n 
CBC HBCA HEM sing 768 n n 
C1D C2D HEM sing 769 n n 
C1D ND HEM doub 770 n n 
C2D C3D HEM doub 771 n n 
C2D CMD HEM sing 772 n n 
C3D C4D HEM sing 773 n n 
C3D CAD HEM sing 774 n n 
C4D ND HEM sing 775 n n 
CMD HMD HEM sing 776 n n 
CMD HMDA HEM sing 777 n n 
CMD HMDB HEM sing 778 n n 
CAD CBD HEM sing 779 n n 
CAD HAD HEM sing 780 n n 
CAD HADA HEM sing 781 n n 
CBD CGD HEM sing 782 n n 
CBD HBD HEM sing 783 n n 
CBD HBDA HEM sing 784 n n 
CGD O1D HEM doub 785 n n 
CGD O2D HEM sing 786 n n 
O2A H2A HEM sing 787 n n 
O2D H2D HEM sing 788 n n 
FE NA HEM sing 789 n n 
FE NB HEM sing 790 n n 
FE NC HEM sing 791 n n 
FE ND HEM sing 792 n n 
#
_atom_sites.entry_id                     8YIN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 11 6PH A 1 501 501 6PH 6PH . 
V 12 CN3 C 1 401 401 CN3 CN3 . 
W 13 9PE C 1 402 402 9PE 9PE . 
X 14 HEM C 1 403 403 HEM HEM . 
Y 14 HEM C 1 404 404 HEM HEM . 
Z 15 CN5 C 1 405 405 CN5 CN5 . 
AA 16 UQ6 C 1 406 406 UQ6 UQ6 . 
BA 17 A1D6O C 1 407 407 A1D6O A1D . 
CA 14 HEM D 1 401 401 HEM HEM . 
DA 11 6PH E 1 301 301 6PH 6PH . 
EA 18 8PE H 1 101 101 8PE 8PE . 
FA 12 CN3 N 1 401 404 CN3 CN3 . 
GA 14 HEM N 1 402 405 HEM HEM . 
HA 16 UQ6 N 1 403 401 UQ6 UQ6 . 
IA 13 9PE N 1 404 402 9PE 9PE . 
JA 14 HEM N 1 405 403 HEM HEM . 
KA 17 A1D6O N 1 406 406 A1D6O A1D . 
LA 14 HEM O 1 401 401 HEM HEM . 
MA 18 8PE S 1 101 101 8PE 8PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . JA 14 164.919 157.522 123.629 1 39.02 ? CHA HEM 405 N 1 
HETATM 2 C CHB HEM . . . JA 14 166.65 157.075 128.146 1 39.02 ? CHB HEM 405 N 1 
HETATM 3 C CHC HEM . . . JA 14 162.2 157.366 129.968 1 39.02 ? CHC HEM 405 N 1 
HETATM 4 C CHD HEM . . . JA 14 160.47 157.792 125.48 1 39.02 ? CHD HEM 405 N 1 
HETATM 5 C C1A HEM . . . JA 14 165.769 157.439 124.708 1 39.02 ? C1A HEM 405 N 1 
HETATM 6 C C2A HEM . . . JA 14 167.211 157.512 124.66 1 39.02 ? C2A HEM 405 N 1 
HETATM 7 C C3A HEM . . . JA 14 167.677 157.387 125.894 1 39.02 ? C3A HEM 405 N 1 
HETATM 8 C C4A HEM . . . JA 14 166.559 157.226 126.786 1 39.02 ? C4A HEM 405 N 1 
HETATM 9 C CMA HEM . . . JA 14 169.161 157.413 126.294 1 39.02 ? CMA HEM 405 N 1 
HETATM 10 C CAA HEM . . . JA 14 168.074 157.706 123.404 1 39.02 ? CAA HEM 405 N 1 
HETATM 11 C CBA HEM . . . JA 14 168.141 159.194 123.117 1 39.02 ? CBA HEM 405 N 1 
HETATM 12 C CGA HEM . . . JA 14 168.893 159.438 121.847 1 39.02 ? CGA HEM 405 N 1 
HETATM 13 O O1A HEM . . . JA 14 168.264 159.919 120.876 1 39.02 ? O1A HEM 405 N 1 
HETATM 14 O O2A HEM . . . JA 14 170.111 159.15 121.806 1 39.02 ? O2A HEM 405 N 1 
HETATM 15 C C1B HEM . . . JA 14 165.604 157.095 129.032 1 39.02 ? C1B HEM 405 N 1 
HETATM 16 C C2B HEM . . . JA 14 165.704 156.914 130.462 1 39.02 ? C2B HEM 405 N 1 
HETATM 17 C C3B HEM . . . JA 14 164.462 157.007 130.973 1 39.02 ? C3B HEM 405 N 1 
HETATM 18 C C4B HEM . . . JA 14 163.562 157.227 129.868 1 39.02 ? C4B HEM 405 N 1 
HETATM 19 C CMB HEM . . . JA 14 167.065 156.692 131.159 1 39.02 ? CMB HEM 405 N 1 
HETATM 20 C CAB HEM . . . JA 14 163.904 156.893 132.416 1 39.02 ? CAB HEM 405 N 1 
HETATM 21 C CBB HEM . . . JA 14 164.504 156.34 133.477 1 39.02 ? CBB HEM 405 N 1 
HETATM 22 C C1C HEM . . . JA 14 161.334 157.418 128.902 1 39.02 ? C1C HEM 405 N 1 
HETATM 23 C C2C HEM . . . JA 14 159.901 157.259 128.955 1 39.02 ? C2C HEM 405 N 1 
HETATM 24 C C3C HEM . . . JA 14 159.434 157.357 127.706 1 39.02 ? C3C HEM 405 N 1 
HETATM 25 C C4C HEM . . . JA 14 160.55 157.614 126.836 1 39.02 ? C4C HEM 405 N 1 
HETATM 26 C CMC HEM . . . JA 14 159.109 156.98 130.249 1 39.02 ? CMC HEM 405 N 1 
HETATM 27 C CAC HEM . . . JA 14 157.981 157.286 127.195 1 39.02 ? CAC HEM 405 N 1 
HETATM 28 C CBC HEM . . . JA 14 157.045 158.111 127.668 1 39.02 ? CBC HEM 405 N 1 
HETATM 29 C C1D HEM . . . JA 14 161.506 157.787 124.577 1 39.02 ? C1D HEM 405 N 1 
HETATM 30 C C2D HEM . . . JA 14 161.384 157.968 123.154 1 39.02 ? C2D HEM 405 N 1 
HETATM 31 C C3D HEM . . . JA 14 162.588 157.912 122.593 1 39.02 ? C3D HEM 405 N 1 
HETATM 32 C C4D HEM . . . JA 14 163.55 157.668 123.673 1 39.02 ? C4D HEM 405 N 1 
HETATM 33 C CMD HEM . . . JA 14 160.069 158.205 122.392 1 39.02 ? CMD HEM 405 N 1 
HETATM 34 C CAD HEM . . . JA 14 162.723 158.065 121.048 1 39.02 ? CAD HEM 405 N 1 
HETATM 35 C CBD HEM . . . JA 14 164.049 158.533 120.459 1 39.02 ? CBD HEM 405 N 1 
HETATM 36 C CGD HEM . . . JA 14 164.194 160.001 120.69 1 39.02 ? CGD HEM 405 N 1 
HETATM 37 O O1D HEM . . . JA 14 163.166 160.708 120.597 1 39.02 ? O1D HEM 405 N 1 
HETATM 38 O O2D HEM . . . JA 14 165.334 160.454 120.952 1 39.02 ? O2D HEM 405 N 1 
HETATM 39 N NA HEM . . . JA 14 165.404 157.263 126.03 1 39.02 ? NA HEM 405 N 1 
HETATM 40 N NB HEM . . . JA 14 164.286 157.282 128.697 1 39.02 ? NB HEM 405 N 1 
HETATM 41 N NC HEM . . . JA 14 161.694 157.631 127.59 1 39.02 ? NC HEM 405 N 1 
HETATM 42 N ND HEM . . . JA 14 162.84 157.608 124.858 1 39.02 ? ND HEM 405 N 1 
HETATM 43 FE FE HEM . . . JA 14 163.575 157.739 126.787 1 39.02 ? FE HEM 405 N 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    94 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#