data_8YIN # _model_server_result.job_id BbXCSoA7WSSkaRNQjzRiPA _model_server_result.datetime_utc '2024-12-26 13:22:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yin # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":406}' # _entry.id 8YIN # _exptl.entry_id 8YIN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 397.517 _entity.id 17 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[2-[(4,6-dimethyl-1,3-benzothiazol-2-yl)sulfanylmethyl]-3-methyl-phenyl]-4-methyl-1,2,3,4-tetrazol-5-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YIN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YIN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 17 BA N N ? 17 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 134 E CYS 164 1_555 E SG CYS 150 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? disulf ? disulf2 O SG CYS 134 P CYS 164 1_555 O SG CYS 150 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc1 B NE2 HIS 82 C HIS 82 1_555 X FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc2 B NE2 HIS 96 C HIS 96 1_555 Y FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc3 B NE2 HIS 183 C HIS 183 1_555 X FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc4 B NE2 HIS 197 C HIS 197 1_555 Y FE HEM . C HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 CA FE HEM . D HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc6 G NE2 HIS 82 N HIS 82 1_555 JA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc7 G NE2 HIS 96 N HIS 96 1_555 GA FE HEM . N HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc8 G NE2 HIS 183 N HIS 183 1_555 JA FE HEM . N HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc9 G NE2 HIS 197 N HIS 197 1_555 GA FE HEM . N HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc10 M NE2 HIS 44 O HIS 105 1_555 LA FE HEM . O HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? # _chem_comp.formula 'C19 H19 N5 O S2' _chem_comp.formula_weight 397.517 _chem_comp.id A1D6O _chem_comp.mon_nstd_flag . _chem_comp.name 1-[2-[(4,6-dimethyl-1,3-benzothiazol-2-yl)sulfanylmethyl]-3-methyl-phenyl]-4-methyl-1,2,3,4-tetrazol-5-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 A1D6O doub 320 n y C15 C14 A1D6O sing 321 n y C16 C17 A1D6O sing 322 n y C14 C13 A1D6O doub 323 n y C17 C18 A1D6O sing 324 n n C17 C12 A1D6O doub 325 n y C13 C12 A1D6O sing 326 n y C13 N19 A1D6O sing 327 n n C12 C11 A1D6O sing 328 n n N19 N20 A1D6O sing 329 n n N19 C23 A1D6O sing 330 n n N20 N21 A1D6O doub 331 n n C11 S10 A1D6O sing 332 n n C23 O24 A1D6O doub 333 n n C23 N22 A1D6O sing 334 n n N21 N22 A1D6O sing 335 n n N22 C25 A1D6O sing 336 n n S10 C08 A1D6O sing 337 n n S07 C08 A1D6O sing 338 n y S07 C04 A1D6O sing 339 n y C08 N09 A1D6O doub 340 n y C04 C03 A1D6O doub 341 n y C04 C05 A1D6O sing 342 n y N09 C05 A1D6O sing 343 n y C03 C02 A1D6O sing 344 n y C05 C06 A1D6O doub 345 n y C02 C26 A1D6O sing 346 n n C02 C01 A1D6O doub 347 n y C06 C01 A1D6O sing 348 n y C06 C27 A1D6O sing 349 n n C15 H1 A1D6O sing 350 n n C26 H2 A1D6O sing 351 n n C26 H3 A1D6O sing 352 n n C26 H4 A1D6O sing 353 n n C01 H5 A1D6O sing 354 n n C03 H6 A1D6O sing 355 n n C11 H7 A1D6O sing 356 n n C11 H8 A1D6O sing 357 n n C14 H9 A1D6O sing 358 n n C16 H10 A1D6O sing 359 n n C18 H11 A1D6O sing 360 n n C18 H12 A1D6O sing 361 n n C18 H13 A1D6O sing 362 n n C25 H14 A1D6O sing 363 n n C25 H15 A1D6O sing 364 n n C25 H16 A1D6O sing 365 n n C27 H17 A1D6O sing 366 n n C27 H18 A1D6O sing 367 n n C27 H19 A1D6O sing 368 n n # _atom_sites.entry_id 8YIN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 11 6PH A 1 501 501 6PH 6PH . V 12 CN3 C 1 401 401 CN3 CN3 . W 13 9PE C 1 402 402 9PE 9PE . X 14 HEM C 1 403 403 HEM HEM . Y 14 HEM C 1 404 404 HEM HEM . Z 15 CN5 C 1 405 405 CN5 CN5 . AA 16 UQ6 C 1 406 406 UQ6 UQ6 . BA 17 A1D6O C 1 407 407 A1D6O A1D . CA 14 HEM D 1 401 401 HEM HEM . DA 11 6PH E 1 301 301 6PH 6PH . EA 18 8PE H 1 101 101 8PE 8PE . FA 12 CN3 N 1 401 404 CN3 CN3 . GA 14 HEM N 1 402 405 HEM HEM . HA 16 UQ6 N 1 403 401 UQ6 UQ6 . IA 13 9PE N 1 404 402 9PE 9PE . JA 14 HEM N 1 405 403 HEM HEM . KA 17 A1D6O N 1 406 406 A1D6O A1D . LA 14 HEM O 1 401 401 HEM HEM . MA 18 8PE S 1 101 101 8PE 8PE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1D6O . . . KA 17 175.188 150.067 122.06 1 43.68 ? C13 A1D6O 406 N 1 HETATM 2 C C15 A1D6O . . . KA 17 176.757 150.165 120.295 1 43.68 ? C15 A1D6O 406 N 1 HETATM 3 C C17 A1D6O . . . KA 17 176.649 148.251 121.72 1 43.68 ? C17 A1D6O 406 N 1 HETATM 4 C C26 A1D6O . . . KA 17 173.194 144.03 131.691 1 43.68 ? C26 A1D6O 406 N 1 HETATM 5 C C01 A1D6O . . . KA 17 172.203 144.938 129.551 1 43.68 ? C01 A1D6O 406 N 1 HETATM 6 C C02 A1D6O . . . KA 17 173.32 144.72 130.343 1 43.68 ? C02 A1D6O 406 N 1 HETATM 7 C C03 A1D6O . . . KA 17 174.578 145.12 129.909 1 43.68 ? C03 A1D6O 406 N 1 HETATM 8 C C04 A1D6O . . . KA 17 174.734 145.746 128.687 1 43.68 ? C04 A1D6O 406 N 1 HETATM 9 C C05 A1D6O . . . KA 17 173.643 145.965 127.892 1 43.68 ? C05 A1D6O 406 N 1 HETATM 10 C C06 A1D6O . . . KA 17 172.378 145.558 128.346 1 43.68 ? C06 A1D6O 406 N 1 HETATM 11 C C08 A1D6O . . . KA 17 175.235 146.919 126.46 1 43.68 ? C08 A1D6O 406 N 1 HETATM 12 C C11 A1D6O . . . KA 17 174.937 148.149 123.626 1 43.68 ? C11 A1D6O 406 N 1 HETATM 13 C C12 A1D6O . . . KA 17 175.634 148.832 122.445 1 43.68 ? C12 A1D6O 406 N 1 HETATM 14 C C14 A1D6O . . . KA 17 175.743 150.744 121.009 1 43.68 ? C14 A1D6O 406 N 1 HETATM 15 C C16 A1D6O . . . KA 17 177.204 148.922 120.659 1 43.68 ? C16 A1D6O 406 N 1 HETATM 16 C C18 A1D6O . . . KA 17 177.2 146.875 122.056 1 43.68 ? C18 A1D6O 406 N 1 HETATM 17 C C23 A1D6O . . . KA 17 174.306 151.702 123.648 1 43.68 ? C23 A1D6O 406 N 1 HETATM 18 C C25 A1D6O . . . KA 17 172.883 153.029 125.178 1 43.68 ? C25 A1D6O 406 N 1 HETATM 19 C C27 A1D6O . . . KA 17 171.153 145.788 127.514 1 43.68 ? C27 A1D6O 406 N 1 HETATM 20 N N09 A1D6O . . . KA 17 173.958 146.605 126.696 1 43.68 ? N09 A1D6O 406 N 1 HETATM 21 N N19 A1D6O . . . KA 17 174.147 150.652 122.84 1 43.68 ? N19 A1D6O 406 N 1 HETATM 22 N N20 A1D6O . . . KA 17 172.877 150.252 122.944 1 43.68 ? N20 A1D6O 406 N 1 HETATM 23 N N21 A1D6O . . . KA 17 172.279 151.057 123.797 1 43.68 ? N21 A1D6O 406 N 1 HETATM 24 N N22 A1D6O . . . KA 17 173.149 151.965 124.245 1 43.68 ? N22 A1D6O 406 N 1 HETATM 25 O O24 A1D6O . . . KA 17 175.283 152.301 123.793 1 43.68 ? O24 A1D6O 406 N 1 HETATM 26 S S07 A1D6O . . . KA 17 176.057 146.362 127.821 1 43.68 ? S07 A1D6O 406 N 1 HETATM 27 S S10 A1D6O . . . KA 17 176.005 147.763 125.027 1 43.68 ? S10 A1D6O 406 N 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #