data_8YJA
#
_model_server_result.job_id            IG3Ud5511v2dJBILoLNwVg 
_model_server_result.datetime_utc      '2024-11-22 09:14:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3801}' 
#
_entry.id    8YJA 
#
_exptl.entry_id    8YJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YJA 
_cell.length_a            77.321 
_cell.length_b            77.321 
_cell.length_c            118.816 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NA NA . A NA 3801 1_555 D O22 IHP . A IHP 3802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc2 C NA NA . A NA 3801 1_555 D O21 IHP . A IHP 3802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8YJA 
_atom_sites.fract_transf_matrix[1][1]    0.012933 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008416 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 3801 169 NA NA . 
D 3 IHP A 1 3802 8158 IHP IHP . 
E 4 HOH A 1 3901 87 HOH HOH . 
E 4 HOH A 2 3902 4 HOH HOH . 
E 4 HOH A 3 3903 45 HOH HOH . 
E 4 HOH A 4 3904 92 HOH HOH . 
E 4 HOH A 5 3905 66 HOH HOH . 
E 4 HOH A 6 3906 18 HOH HOH . 
E 4 HOH A 7 3907 78 HOH HOH . 
E 4 HOH A 8 3908 85 HOH HOH . 
E 4 HOH A 9 3909 3 HOH HOH . 
E 4 HOH A 10 3910 49 HOH HOH . 
E 4 HOH A 11 3911 93 HOH HOH . 
E 4 HOH A 12 3912 21 HOH HOH . 
E 4 HOH A 13 3913 7 HOH HOH . 
E 4 HOH A 14 3914 71 HOH HOH . 
E 4 HOH A 15 3915 86 HOH HOH . 
E 4 HOH A 16 3916 15 HOH HOH . 
E 4 HOH A 17 3917 53 HOH HOH . 
E 4 HOH A 18 3918 36 HOH HOH . 
E 4 HOH A 19 3919 68 HOH HOH . 
E 4 HOH A 20 3920 12 HOH HOH . 
E 4 HOH A 21 3921 9 HOH HOH . 
E 4 HOH A 22 3922 58 HOH HOH . 
E 4 HOH A 23 3923 2 HOH HOH . 
E 4 HOH A 24 3924 10 HOH HOH . 
E 4 HOH A 25 3925 61 HOH HOH . 
E 4 HOH A 26 3926 67 HOH HOH . 
E 4 HOH A 27 3927 28 HOH HOH . 
E 4 HOH A 28 3928 52 HOH HOH . 
E 4 HOH A 29 3929 13 HOH HOH . 
E 4 HOH A 30 3930 63 HOH HOH . 
E 4 HOH A 31 3931 89 HOH HOH . 
E 4 HOH A 32 3932 31 HOH HOH . 
E 4 HOH A 33 3933 46 HOH HOH . 
E 4 HOH A 34 3934 96 HOH HOH . 
E 4 HOH A 35 3935 57 HOH HOH . 
E 4 HOH A 36 3936 24 HOH HOH . 
E 4 HOH A 37 3937 34 HOH HOH . 
E 4 HOH A 38 3938 95 HOH HOH . 
E 4 HOH A 39 3939 22 HOH HOH . 
E 4 HOH A 40 3940 30 HOH HOH . 
E 4 HOH A 41 3941 48 HOH HOH . 
E 4 HOH A 42 3942 84 HOH HOH . 
E 4 HOH A 43 3943 90 HOH HOH . 
E 4 HOH A 44 3944 54 HOH HOH . 
E 4 HOH A 45 3945 50 HOH HOH . 
E 4 HOH A 46 3946 56 HOH HOH . 
E 4 HOH A 47 3947 80 HOH HOH . 
F 4 HOH B 1 3801 70 HOH HOH . 
F 4 HOH B 2 3802 75 HOH HOH . 
F 4 HOH B 3 3803 91 HOH HOH . 
F 4 HOH B 4 3804 72 HOH HOH . 
F 4 HOH B 5 3805 42 HOH HOH . 
F 4 HOH B 6 3806 79 HOH HOH . 
F 4 HOH B 7 3807 39 HOH HOH . 
F 4 HOH B 8 3808 11 HOH HOH . 
F 4 HOH B 9 3809 14 HOH HOH . 
F 4 HOH B 10 3810 27 HOH HOH . 
F 4 HOH B 11 3811 62 HOH HOH . 
F 4 HOH B 12 3812 8 HOH HOH . 
F 4 HOH B 13 3813 55 HOH HOH . 
F 4 HOH B 14 3814 38 HOH HOH . 
F 4 HOH B 15 3815 47 HOH HOH . 
F 4 HOH B 16 3816 1 HOH HOH . 
F 4 HOH B 17 3817 37 HOH HOH . 
F 4 HOH B 18 3818 25 HOH HOH . 
F 4 HOH B 19 3819 23 HOH HOH . 
F 4 HOH B 20 3820 17 HOH HOH . 
F 4 HOH B 21 3821 88 HOH HOH . 
F 4 HOH B 22 3822 16 HOH HOH . 
F 4 HOH B 23 3823 76 HOH HOH . 
F 4 HOH B 24 3824 60 HOH HOH . 
F 4 HOH B 25 3825 74 HOH HOH . 
F 4 HOH B 26 3826 20 HOH HOH . 
F 4 HOH B 27 3827 44 HOH HOH . 
F 4 HOH B 28 3828 82 HOH HOH . 
F 4 HOH B 29 3829 33 HOH HOH . 
F 4 HOH B 30 3830 40 HOH HOH . 
F 4 HOH B 31 3831 77 HOH HOH . 
F 4 HOH B 32 3832 43 HOH HOH . 
F 4 HOH B 33 3833 6 HOH HOH . 
F 4 HOH B 34 3834 35 HOH HOH . 
F 4 HOH B 35 3835 26 HOH HOH . 
F 4 HOH B 36 3836 51 HOH HOH . 
F 4 HOH B 37 3837 73 HOH HOH . 
F 4 HOH B 38 3838 59 HOH HOH . 
F 4 HOH B 39 3839 19 HOH HOH . 
F 4 HOH B 40 3840 83 HOH HOH . 
F 4 HOH B 41 3841 69 HOH HOH . 
F 4 HOH B 42 3842 32 HOH HOH . 
F 4 HOH B 43 3843 41 HOH HOH . 
F 4 HOH B 44 3844 5 HOH HOH . 
F 4 HOH B 45 3845 64 HOH HOH . 
F 4 HOH B 46 3846 97 HOH HOH . 
F 4 HOH B 47 3847 65 HOH HOH . 
F 4 HOH B 48 3848 81 HOH HOH . 
F 4 HOH B 49 3849 94 HOH HOH . 
F 4 HOH B 50 3850 29 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -22.035 
_atom_site.Cartn_y               -17.095 
_atom_site.Cartn_z               -37.645 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        52.58 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           3801 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           1 
#