data_8YJA
#
_model_server_result.job_id            u1RI3wwLMSD7n0GeAwpv4A 
_model_server_result.datetime_utc      '2024-10-18 22:20:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3802}' 
#
_entry.id    8YJA 
#
_exptl.entry_id    8YJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              660.035 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSITOL HEXAKISPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YJA 
_cell.length_a            77.321 
_cell.length_b            77.321 
_cell.length_c            118.816 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NA NA . A NA 3801 1_555 D O22 IHP . A IHP 3802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc2 C NA NA . A NA 3801 1_555 D O21 IHP . A IHP 3802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
#
_chem_comp.formula           'C6 H18 O24 P6' 
_chem_comp.formula_weight    660.035 
_chem_comp.id                IHP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'INOSITOL HEXAKISPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IHP sing 152 n n 
C1 C6 IHP sing 153 n n 
C1 O11 IHP sing 154 n n 
C1 H1 IHP sing 155 n n 
C2 C3 IHP sing 156 n n 
C2 O12 IHP sing 157 n n 
C2 H2 IHP sing 158 n n 
C3 C4 IHP sing 159 n n 
C3 O13 IHP sing 160 n n 
C3 H3 IHP sing 161 n n 
C4 C5 IHP sing 162 n n 
C4 O14 IHP sing 163 n n 
C4 H4 IHP sing 164 n n 
C5 C6 IHP sing 165 n n 
C5 O15 IHP sing 166 n n 
C5 H5 IHP sing 167 n n 
C6 O16 IHP sing 168 n n 
C6 H6 IHP sing 169 n n 
O11 P1 IHP sing 170 n n 
P1 O21 IHP doub 171 n n 
P1 O31 IHP sing 172 n n 
P1 O41 IHP sing 173 n n 
O31 H31 IHP sing 174 n n 
O41 H41 IHP sing 175 n n 
O12 P2 IHP sing 176 n n 
P2 O22 IHP doub 177 n n 
P2 O32 IHP sing 178 n n 
P2 O42 IHP sing 179 n n 
O32 H32 IHP sing 180 n n 
O42 H42 IHP sing 181 n n 
O13 P3 IHP sing 182 n n 
P3 O23 IHP doub 183 n n 
P3 O33 IHP sing 184 n n 
P3 O43 IHP sing 185 n n 
O33 H33 IHP sing 186 n n 
O43 H43 IHP sing 187 n n 
O14 P4 IHP sing 188 n n 
P4 O24 IHP doub 189 n n 
P4 O34 IHP sing 190 n n 
P4 O44 IHP sing 191 n n 
O34 H34 IHP sing 192 n n 
O44 H44 IHP sing 193 n n 
O15 P5 IHP sing 194 n n 
P5 O25 IHP doub 195 n n 
P5 O35 IHP sing 196 n n 
P5 O45 IHP sing 197 n n 
O35 H35 IHP sing 198 n n 
O45 H45 IHP sing 199 n n 
O16 P6 IHP sing 200 n n 
P6 O26 IHP doub 201 n n 
P6 O36 IHP sing 202 n n 
P6 O46 IHP sing 203 n n 
O36 H36 IHP sing 204 n n 
O46 H46 IHP sing 205 n n 
#
_atom_sites.entry_id                     8YJA 
_atom_sites.fract_transf_matrix[1][1]    0.012933 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008416 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 3801 169 NA NA . 
D 3 IHP A 1 3802 8158 IHP IHP . 
E 4 HOH A 1 3901 87 HOH HOH . 
E 4 HOH A 2 3902 4 HOH HOH . 
E 4 HOH A 3 3903 45 HOH HOH . 
E 4 HOH A 4 3904 92 HOH HOH . 
E 4 HOH A 5 3905 66 HOH HOH . 
E 4 HOH A 6 3906 18 HOH HOH . 
E 4 HOH A 7 3907 78 HOH HOH . 
E 4 HOH A 8 3908 85 HOH HOH . 
E 4 HOH A 9 3909 3 HOH HOH . 
E 4 HOH A 10 3910 49 HOH HOH . 
E 4 HOH A 11 3911 93 HOH HOH . 
E 4 HOH A 12 3912 21 HOH HOH . 
E 4 HOH A 13 3913 7 HOH HOH . 
E 4 HOH A 14 3914 71 HOH HOH . 
E 4 HOH A 15 3915 86 HOH HOH . 
E 4 HOH A 16 3916 15 HOH HOH . 
E 4 HOH A 17 3917 53 HOH HOH . 
E 4 HOH A 18 3918 36 HOH HOH . 
E 4 HOH A 19 3919 68 HOH HOH . 
E 4 HOH A 20 3920 12 HOH HOH . 
E 4 HOH A 21 3921 9 HOH HOH . 
E 4 HOH A 22 3922 58 HOH HOH . 
E 4 HOH A 23 3923 2 HOH HOH . 
E 4 HOH A 24 3924 10 HOH HOH . 
E 4 HOH A 25 3925 61 HOH HOH . 
E 4 HOH A 26 3926 67 HOH HOH . 
E 4 HOH A 27 3927 28 HOH HOH . 
E 4 HOH A 28 3928 52 HOH HOH . 
E 4 HOH A 29 3929 13 HOH HOH . 
E 4 HOH A 30 3930 63 HOH HOH . 
E 4 HOH A 31 3931 89 HOH HOH . 
E 4 HOH A 32 3932 31 HOH HOH . 
E 4 HOH A 33 3933 46 HOH HOH . 
E 4 HOH A 34 3934 96 HOH HOH . 
E 4 HOH A 35 3935 57 HOH HOH . 
E 4 HOH A 36 3936 24 HOH HOH . 
E 4 HOH A 37 3937 34 HOH HOH . 
E 4 HOH A 38 3938 95 HOH HOH . 
E 4 HOH A 39 3939 22 HOH HOH . 
E 4 HOH A 40 3940 30 HOH HOH . 
E 4 HOH A 41 3941 48 HOH HOH . 
E 4 HOH A 42 3942 84 HOH HOH . 
E 4 HOH A 43 3943 90 HOH HOH . 
E 4 HOH A 44 3944 54 HOH HOH . 
E 4 HOH A 45 3945 50 HOH HOH . 
E 4 HOH A 46 3946 56 HOH HOH . 
E 4 HOH A 47 3947 80 HOH HOH . 
F 4 HOH B 1 3801 70 HOH HOH . 
F 4 HOH B 2 3802 75 HOH HOH . 
F 4 HOH B 3 3803 91 HOH HOH . 
F 4 HOH B 4 3804 72 HOH HOH . 
F 4 HOH B 5 3805 42 HOH HOH . 
F 4 HOH B 6 3806 79 HOH HOH . 
F 4 HOH B 7 3807 39 HOH HOH . 
F 4 HOH B 8 3808 11 HOH HOH . 
F 4 HOH B 9 3809 14 HOH HOH . 
F 4 HOH B 10 3810 27 HOH HOH . 
F 4 HOH B 11 3811 62 HOH HOH . 
F 4 HOH B 12 3812 8 HOH HOH . 
F 4 HOH B 13 3813 55 HOH HOH . 
F 4 HOH B 14 3814 38 HOH HOH . 
F 4 HOH B 15 3815 47 HOH HOH . 
F 4 HOH B 16 3816 1 HOH HOH . 
F 4 HOH B 17 3817 37 HOH HOH . 
F 4 HOH B 18 3818 25 HOH HOH . 
F 4 HOH B 19 3819 23 HOH HOH . 
F 4 HOH B 20 3820 17 HOH HOH . 
F 4 HOH B 21 3821 88 HOH HOH . 
F 4 HOH B 22 3822 16 HOH HOH . 
F 4 HOH B 23 3823 76 HOH HOH . 
F 4 HOH B 24 3824 60 HOH HOH . 
F 4 HOH B 25 3825 74 HOH HOH . 
F 4 HOH B 26 3826 20 HOH HOH . 
F 4 HOH B 27 3827 44 HOH HOH . 
F 4 HOH B 28 3828 82 HOH HOH . 
F 4 HOH B 29 3829 33 HOH HOH . 
F 4 HOH B 30 3830 40 HOH HOH . 
F 4 HOH B 31 3831 77 HOH HOH . 
F 4 HOH B 32 3832 43 HOH HOH . 
F 4 HOH B 33 3833 6 HOH HOH . 
F 4 HOH B 34 3834 35 HOH HOH . 
F 4 HOH B 35 3835 26 HOH HOH . 
F 4 HOH B 36 3836 51 HOH HOH . 
F 4 HOH B 37 3837 73 HOH HOH . 
F 4 HOH B 38 3838 59 HOH HOH . 
F 4 HOH B 39 3839 19 HOH HOH . 
F 4 HOH B 40 3840 83 HOH HOH . 
F 4 HOH B 41 3841 69 HOH HOH . 
F 4 HOH B 42 3842 32 HOH HOH . 
F 4 HOH B 43 3843 41 HOH HOH . 
F 4 HOH B 44 3844 5 HOH HOH . 
F 4 HOH B 45 3845 64 HOH HOH . 
F 4 HOH B 46 3846 97 HOH HOH . 
F 4 HOH B 47 3847 65 HOH HOH . 
F 4 HOH B 48 3848 81 HOH HOH . 
F 4 HOH B 49 3849 94 HOH HOH . 
F 4 HOH B 50 3850 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IHP . . . D 3 -18.101 -16.361 -35.681 1 62.13 ? C1 IHP 3802 A 1 
HETATM 2 C C2 IHP . . . D 3 -18.282 -17.78 -35.128 1 61.59 ? C2 IHP 3802 A 1 
HETATM 3 C C3 IHP . . . D 3 -17.297 -18.112 -34.009 1 60.55 ? C3 IHP 3802 A 1 
HETATM 4 C C4 IHP . . . D 3 -17.224 -17.047 -32.912 1 62.63 ? C4 IHP 3802 A 1 
HETATM 5 C C5 IHP . . . D 3 -17.112 -15.605 -33.428 1 60.23 ? C5 IHP 3802 A 1 
HETATM 6 C C6 IHP . . . D 3 -18.006 -15.274 -34.626 1 53.83 ? C6 IHP 3802 A 1 
HETATM 7 O O11 IHP . . . D 3 -19.257 -16.051 -36.44 1 60.21 ? O11 IHP 3802 A 1 
HETATM 8 P P1 IHP . . . D 3 -18.974 -15.681 -38.018 1 68.62 ? P1 IHP 3802 A 1 
HETATM 9 O O21 IHP . . . D 3 -20.285 -15.793 -38.777 1 61.92 ? O21 IHP 3802 A 1 
HETATM 10 O O31 IHP . . . D 3 -17.951 -16.645 -38.591 1 67.97 ? O31 IHP 3802 A 1 
HETATM 11 O O41 IHP . . . D 3 -18.399 -14.288 -38.1 1 60.94 ? O41 IHP 3802 A 1 
HETATM 12 O O12 IHP . . . D 3 -19.581 -17.868 -34.602 1 67.45 ? O12 IHP 3802 A 1 
HETATM 13 P P2 IHP . . . D 3 -20.6 -19.028 -35.102 1 76.94 ? P2 IHP 3802 A 1 
HETATM 14 O O22 IHP . . . D 3 -21.813 -18.371 -35.721 1 61.11 ? O22 IHP 3802 A 1 
HETATM 15 O O32 IHP . . . D 3 -19.915 -19.924 -36.121 1 66.62 ? O32 IHP 3802 A 1 
HETATM 16 O O42 IHP . . . D 3 -21.007 -19.819 -33.877 1 61.52 ? O42 IHP 3802 A 1 
HETATM 17 O O13 IHP . . . D 3 -17.725 -19.337 -33.414 1 62.51 ? O13 IHP 3802 A 1 
HETATM 18 P P3 IHP . . . D 3 -16.483 -20.378 -33.004 1 59.82 ? P3 IHP 3802 A 1 
HETATM 19 O O23 IHP . . . D 3 -16.422 -20.519 -31.5 1 54.51 ? O23 IHP 3802 A 1 
HETATM 20 O O33 IHP . . . D 3 -15.206 -19.749 -33.539 1 54.71 ? O33 IHP 3802 A 1 
HETATM 21 O O43 IHP . . . D 3 -16.669 -21.737 -33.641 1 62.77 ? O43 IHP 3802 A 1 
HETATM 22 O O14 IHP . . . D 3 -16.055 -17.283 -32.14 1 61.63 ? O14 IHP 3802 A 1 
HETATM 23 P P4 IHP . . . D 3 -16.128 -17.264 -30.451 1 64.26 ? P4 IHP 3802 A 1 
HETATM 24 O O24 IHP . . . D 3 -16.827 -18.522 -29.985 1 61.28 ? O24 IHP 3802 A 1 
HETATM 25 O O34 IHP . . . D 3 -14.692 -17.225 -29.923 1 48.5 ? O34 IHP 3802 A 1 
HETATM 26 O O44 IHP . . . D 3 -16.922 -16.081 -29.917 1 49.86 ? O44 IHP 3802 A 1 
HETATM 27 O O15 IHP . . . D 3 -17.485 -14.723 -32.399 1 59.68 ? O15 IHP 3802 A 1 
HETATM 28 P P5 IHP . . . D 3 -16.414 -13.576 -31.922 1 62.65 ? P5 IHP 3802 A 1 
HETATM 29 O O25 IHP . . . D 3 -15.161 -13.657 -32.77 1 45.03 ? O25 IHP 3802 A 1 
HETATM 30 O O35 IHP . . . D 3 -17.006 -12.198 -32.062 1 54.3 ? O35 IHP 3802 A 1 
HETATM 31 O O45 IHP . . . D 3 -16.153 -13.764 -30.45 1 45.4 ? O45 IHP 3802 A 1 
HETATM 32 O O16 IHP . . . D 3 -17.408 -14.16 -35.242 1 59.39 ? O16 IHP 3802 A 1 
HETATM 33 P P6 IHP . . . D 3 -18.106 -12.663 -35.034 1 62.16 ? P6 IHP 3802 A 1 
HETATM 34 O O26 IHP . . . D 3 -17.09 -11.679 -34.5 1 50.34 ? O26 IHP 3802 A 1 
HETATM 35 O O36 IHP . . . D 3 -18.585 -12.179 -36.387 1 59.94 ? O36 IHP 3802 A 1 
HETATM 36 O O46 IHP . . . D 3 -19.286 -12.78 -34.088 1 56.88 ? O46 IHP 3802 A 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           36 
#