data_8YKI # _model_server_result.job_id AGLrViyi81hG0zFIBvrElg _model_server_result.datetime_utc '2025-03-21 14:17:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 8YKI # _exptl.entry_id 8YKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 587.666 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tasurgratinib _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107 _cell.angle_gamma 90 _cell.entry_id 8YKI _cell.length_a 214.362 _cell.length_b 50.26 _cell.length_c 64.906 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C32 H37 N5 O6' _chem_comp.formula_weight 587.666 _chem_comp.id A1LY1 _chem_comp.mon_nstd_flag . _chem_comp.name Tasurgratinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms E-7090 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 N39 A1LY1 sing 1 n n N39 C38 A1LY1 sing 2 n n O41 C38 A1LY1 doub 3 n n C38 N35 A1LY1 sing 4 n n C31 C32 A1LY1 sing 5 n n C31 O30 A1LY1 sing 6 n n N35 C27 A1LY1 sing 7 n y N35 C36 A1LY1 sing 8 n y C32 O33 A1LY1 sing 9 n n C28 C27 A1LY1 doub 10 n y C28 C29 A1LY1 sing 11 n y C27 C26 A1LY1 sing 12 n y C36 C37 A1LY1 doub 13 n y O30 C29 A1LY1 sing 14 n n C29 C24 A1LY1 doub 15 n y O33 C34 A1LY1 sing 16 n n C26 C37 A1LY1 sing 17 n y C26 C25 A1LY1 doub 18 n y C24 C25 A1LY1 sing 19 n y C24 O23 A1LY1 sing 20 n n O23 C19 A1LY1 sing 21 n n C19 C20 A1LY1 doub 22 n y C19 C18 A1LY1 sing 23 n y C20 C21 A1LY1 sing 24 n y C18 C17 A1LY1 doub 25 n y C21 N22 A1LY1 doub 26 n y C17 N22 A1LY1 sing 27 n y C17 N16 A1LY1 sing 28 n n O15 C14 A1LY1 doub 29 n n C12 C11 A1LY1 doub 30 n y C12 C13 A1LY1 sing 31 n y C14 N16 A1LY1 sing 32 n n C14 C13 A1LY1 sing 33 n n C11 C10 A1LY1 sing 34 n y C13 C42 A1LY1 doub 35 n y C10 C7 A1LY1 sing 36 n n C10 C43 A1LY1 doub 37 n y C42 C43 A1LY1 sing 38 n y C7 C8 A1LY1 sing 39 n n C7 C6 A1LY1 sing 40 n n C8 C9 A1LY1 sing 41 n n C9 N4 A1LY1 sing 42 n n C6 C5 A1LY1 sing 43 n n N4 C5 A1LY1 sing 44 n n N4 C3 A1LY1 sing 45 n n C3 C2 A1LY1 sing 46 n n C2 O1 A1LY1 sing 47 n n C2 H1 A1LY1 sing 48 n n C2 H2 A1LY1 sing 49 n n C3 H3 A1LY1 sing 50 n n C3 H4 A1LY1 sing 51 n n C5 H5 A1LY1 sing 52 n n C5 H6 A1LY1 sing 53 n n C6 H7 A1LY1 sing 54 n n C6 H8 A1LY1 sing 55 n n C7 H9 A1LY1 sing 56 n n C8 H10 A1LY1 sing 57 n n C8 H11 A1LY1 sing 58 n n C11 H12 A1LY1 sing 59 n n C12 H13 A1LY1 sing 60 n n C18 H14 A1LY1 sing 61 n n C21 H15 A1LY1 sing 62 n n C31 H16 A1LY1 sing 63 n n C31 H17 A1LY1 sing 64 n n C32 H18 A1LY1 sing 65 n n C32 H19 A1LY1 sing 66 n n C34 H20 A1LY1 sing 67 n n C34 H21 A1LY1 sing 68 n n C34 H22 A1LY1 sing 69 n n C36 H23 A1LY1 sing 70 n n C37 H24 A1LY1 sing 71 n n C40 H25 A1LY1 sing 72 n n C40 H26 A1LY1 sing 73 n n C40 H27 A1LY1 sing 74 n n O1 H28 A1LY1 sing 75 n n C9 H30 A1LY1 sing 76 n n C9 H31 A1LY1 sing 77 n n N16 H32 A1LY1 sing 78 n n C20 H33 A1LY1 sing 79 n n C25 H34 A1LY1 sing 80 n n C28 H35 A1LY1 sing 81 n n N39 H36 A1LY1 sing 82 n n C42 H37 A1LY1 sing 83 n n C43 H38 A1LY1 sing 84 n n # _atom_sites.entry_id 8YKI _atom_sites.fract_transf_matrix[1][1] 0.004665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1LY1 A 1 801 1 A1LY1 INX . D 3 CL A 1 802 2 CL CL . E 2 A1LY1 B 1 801 2 A1LY1 INX . F 3 CL B 1 802 1 CL CL . G 4 HOH A 1 901 7 HOH HOH . G 4 HOH A 2 902 1 HOH HOH . G 4 HOH A 3 903 2 HOH HOH . G 4 HOH A 4 904 4 HOH HOH . G 4 HOH A 5 905 5 HOH HOH . G 4 HOH A 6 906 11 HOH HOH . G 4 HOH A 7 907 6 HOH HOH . G 4 HOH A 8 908 9 HOH HOH . H 4 HOH B 1 901 12 HOH HOH . H 4 HOH B 2 902 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 A1LY1 . . . E 2 -55.842 -3.463 36.576 0 117.73 ? C2 A1LY1 801 B 1 HETATM 2 C C3 A1LY1 . . . E 2 -56.555 -4.746 37.026 0 117.44 ? C3 A1LY1 801 B 1 HETATM 3 C C5 A1LY1 . . . E 2 -55.777 -7.014 37.813 1 120.96 ? C5 A1LY1 801 B 1 HETATM 4 C C6 A1LY1 . . . E 2 -54.572 -7.949 37.607 1 112.82 ? C6 A1LY1 801 B 1 HETATM 5 C C7 A1LY1 . . . E 2 -54.601 -8.528 36.172 1 106.19 ? C7 A1LY1 801 B 1 HETATM 6 C C8 A1LY1 . . . E 2 -54.654 -7.386 35.142 1 112.6 ? C8 A1LY1 801 B 1 HETATM 7 C C11 A1LY1 . . . E 2 -53.625 -10.597 35.115 1 92.78 ? C11 A1LY1 801 B 1 HETATM 8 C C12 A1LY1 . . . E 2 -52.556 -11.417 34.752 1 90.59 ? C12 A1LY1 801 B 1 HETATM 9 C C17 A1LY1 . . . E 2 -47.698 -12.004 33.842 1 77.66 ? C17 A1LY1 801 B 1 HETATM 10 C C18 A1LY1 . . . E 2 -47.456 -13.394 33.718 1 77.23 ? C18 A1LY1 801 B 1 HETATM 11 C C19 A1LY1 . . . E 2 -46.198 -13.864 33.3 1 72.49 ? C19 A1LY1 801 B 1 HETATM 12 C C21 A1LY1 . . . E 2 -45.494 -11.565 33.142 1 68.13 ? C21 A1LY1 801 B 1 HETATM 13 N N22 A1LY1 . . . E 2 -46.694 -11.164 33.544 1 72.44 ? N22 A1LY1 801 B 1 HETATM 14 C C24 A1LY1 . . . E 2 -45.171 -15.753 32.282 1 80.07 ? C24 A1LY1 801 B 1 HETATM 15 C C27 A1LY1 . . . E 2 -43.343 -16.814 30.424 1 86.69 ? C27 A1LY1 801 B 1 HETATM 16 C C31 A1LY1 . . . E 2 -47.722 -15.989 29.883 1 85.67 ? C31 A1LY1 801 B 1 HETATM 17 C C32 A1LY1 . . . E 2 -47.947 -17.373 30.508 1 85.21 ? C32 A1LY1 801 B 1 HETATM 18 C C34 A1LY1 . . . E 2 -48.394 -18.665 32.376 0 89.71 ? C34 A1LY1 801 B 1 HETATM 19 C C36 A1LY1 . . . E 2 -41.32 -17.733 30.726 1 89.45 ? C36 A1LY1 801 B 1 HETATM 20 C C37 A1LY1 . . . E 2 -41.733 -17.426 31.958 1 90.12 ? C37 A1LY1 801 B 1 HETATM 21 C C38 A1LY1 . . . E 2 -42.086 -17.574 28.436 1 82.37 ? C38 A1LY1 801 B 1 HETATM 22 C C40 A1LY1 . . . E 2 -41.292 -18.958 26.523 1 71.68 ? C40 A1LY1 801 B 1 HETATM 23 O O41 A1LY1 . . . E 2 -42.374 -16.66 27.678 1 67.42 ? O41 A1LY1 801 B 1 HETATM 24 O O1 A1LY1 . . . E 2 -54.62 -3.3 37.302 0 117.63 ? O1 A1LY1 801 B 1 HETATM 25 N N4 A1LY1 . . . E 2 -55.787 -5.947 36.793 1 121.58 ? N4 A1LY1 801 B 1 HETATM 26 C C9 A1LY1 . . . E 2 -55.863 -6.481 35.421 1 114.4 ? C9 A1LY1 801 B 1 HETATM 27 C C10 A1LY1 . . . E 2 -53.41 -9.401 35.812 1 95.14 ? C10 A1LY1 801 B 1 HETATM 28 C C13 A1LY1 . . . E 2 -51.225 -11.048 35.063 1 89.18 ? C13 A1LY1 801 B 1 HETATM 29 C C14 A1LY1 . . . E 2 -50.079 -11.926 34.685 1 82.07 ? C14 A1LY1 801 B 1 HETATM 30 O O15 A1LY1 . . . E 2 -50.269 -13.123 34.779 1 73.04 ? O15 A1LY1 801 B 1 HETATM 31 N N16 A1LY1 . . . E 2 -48.9 -11.371 34.25 1 80.09 ? N16 A1LY1 801 B 1 HETATM 32 C C20 A1LY1 . . . E 2 -45.193 -12.909 33.001 1 69.39 ? C20 A1LY1 801 B 1 HETATM 33 O O23 A1LY1 . . . E 2 -46.03 -15.22 33.195 1 80.51 ? O23 A1LY1 801 B 1 HETATM 34 C C25 A1LY1 . . . E 2 -43.969 -16.283 32.736 1 84.29 ? C25 A1LY1 801 B 1 HETATM 35 C C26 A1LY1 . . . E 2 -43.051 -16.814 31.814 1 90.84 ? C26 A1LY1 801 B 1 HETATM 36 C C28 A1LY1 . . . E 2 -44.561 -16.277 29.987 1 81.26 ? C28 A1LY1 801 B 1 HETATM 37 C C29 A1LY1 . . . E 2 -45.475 -15.748 30.904 1 80.69 ? C29 A1LY1 801 B 1 HETATM 38 O O30 A1LY1 . . . E 2 -46.666 -15.222 30.488 1 81.31 ? O30 A1LY1 801 B 1 HETATM 39 O O33 A1LY1 . . . E 2 -48.167 -17.235 31.912 1 96.29 ? O33 A1LY1 801 B 1 HETATM 40 N N35 A1LY1 . . . E 2 -42.262 -17.399 29.777 1 90.64 ? N35 A1LY1 801 B 1 HETATM 41 N N39 A1LY1 . . . E 2 -41.543 -18.724 27.952 1 76.19 ? N39 A1LY1 801 B 1 HETATM 42 C C42 A1LY1 . . . E 2 -51.018 -9.841 35.765 1 90.3 ? C42 A1LY1 801 B 1 HETATM 43 C C43 A1LY1 . . . E 2 -52.092 -9.031 36.117 1 97.27 ? C43 A1LY1 801 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #