data_8YKJ # _model_server_result.job_id AwCjJPVn202LOjNI-6PP7g _model_server_result.datetime_utc '2025-07-17 04:09:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ykj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8YKJ # _exptl.entry_id 8YKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.583 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YKJ _cell.length_a 104.414 _cell.length_b 67.768 _cell.length_c 101.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H33 N5 O2' _chem_comp.formula_weight 459.583 _chem_comp.id X77 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 N32 X77 sing 376 n y C33 N34 X77 doub 377 n y N32 C31 X77 sing 378 n y N34 C30 X77 sing 379 n y C31 C30 X77 doub 380 n y C30 C02 X77 sing 381 n n C27 C24 X77 sing 382 n n C02 O01 X77 doub 383 n n C02 N03 X77 sing 384 n n C26 C24 X77 sing 385 n n C28 C29 X77 doub 386 n y C28 C23 X77 sing 387 n y C24 C23 X77 sing 388 n n C24 C25 X77 sing 389 n n C29 C20 X77 sing 390 n y C23 C22 X77 doub 391 n y C20 N03 X77 sing 392 n n C20 C21 X77 doub 393 n y C22 C21 X77 sing 394 n y N03 C04 X77 sing 395 n n C19 N18 X77 doub 396 n y C19 C14 X77 sing 397 n y C04 C14 X77 sing 398 n n C04 C05 X77 sing 399 n n N18 C17 X77 sing 400 n y C14 C15 X77 doub 401 n y O13 C05 X77 doub 402 n n C17 C16 X77 doub 403 n y C05 N06 X77 sing 404 n n C15 C16 X77 sing 405 n y N06 C07 X77 sing 406 n n C12 C07 X77 sing 407 n n C12 C11 X77 sing 408 n n C07 C08 X77 sing 409 n n C11 C10 X77 sing 410 n n C08 C09 X77 sing 411 n n C10 C09 X77 sing 412 n n C04 H041 X77 sing 413 n n C07 H071 X77 sing 414 n n C08 H081 X77 sing 415 n n C08 H082 X77 sing 416 n n C09 H091 X77 sing 417 n n C09 H092 X77 sing 418 n n C10 H101 X77 sing 419 n n C10 H102 X77 sing 420 n n C11 H112 X77 sing 421 n n C11 H111 X77 sing 422 n n C12 H121 X77 sing 423 n n C12 H122 X77 sing 424 n n C15 H151 X77 sing 425 n n C16 H161 X77 sing 426 n n C17 H171 X77 sing 427 n n C19 H191 X77 sing 428 n n C21 H211 X77 sing 429 n n C22 H221 X77 sing 430 n n C25 H251 X77 sing 431 n n C25 H252 X77 sing 432 n n C25 H253 X77 sing 433 n n C26 H261 X77 sing 434 n n C26 H263 X77 sing 435 n n C26 H262 X77 sing 436 n n C27 H272 X77 sing 437 n n C27 H273 X77 sing 438 n n C27 H271 X77 sing 439 n n C28 H281 X77 sing 440 n n C29 H291 X77 sing 441 n n C31 H311 X77 sing 442 n n C33 H331 X77 sing 443 n n N06 H061 X77 sing 444 n n N32 H1 X77 sing 445 n n # _atom_sites.entry_id 8YKJ _atom_sites.fract_transf_matrix[1][1] 0.009577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X77 A 1 401 1 X77 LIG . D 2 X77 B 1 401 2 X77 LIG . E 3 HOH A 1 501 20 HOH HOH . E 3 HOH A 2 502 8 HOH HOH . E 3 HOH A 3 503 99 HOH HOH . E 3 HOH A 4 504 85 HOH HOH . E 3 HOH A 5 505 13 HOH HOH . E 3 HOH A 6 506 101 HOH HOH . E 3 HOH A 7 507 16 HOH HOH . E 3 HOH A 8 508 69 HOH HOH . E 3 HOH A 9 509 66 HOH HOH . E 3 HOH A 10 510 31 HOH HOH . E 3 HOH A 11 511 45 HOH HOH . E 3 HOH A 12 512 33 HOH HOH . E 3 HOH A 13 513 17 HOH HOH . E 3 HOH A 14 514 2 HOH HOH . E 3 HOH A 15 515 28 HOH HOH . E 3 HOH A 16 516 100 HOH HOH . E 3 HOH A 17 517 88 HOH HOH . E 3 HOH A 18 518 29 HOH HOH . E 3 HOH A 19 519 32 HOH HOH . E 3 HOH A 20 520 78 HOH HOH . E 3 HOH A 21 521 24 HOH HOH . E 3 HOH A 22 522 30 HOH HOH . E 3 HOH A 23 523 89 HOH HOH . E 3 HOH A 24 524 65 HOH HOH . E 3 HOH A 25 525 25 HOH HOH . E 3 HOH A 26 526 7 HOH HOH . E 3 HOH A 27 527 64 HOH HOH . E 3 HOH A 28 528 42 HOH HOH . E 3 HOH A 29 529 37 HOH HOH . E 3 HOH A 30 530 18 HOH HOH . E 3 HOH A 31 531 97 HOH HOH . E 3 HOH A 32 532 51 HOH HOH . E 3 HOH A 33 533 92 HOH HOH . E 3 HOH A 34 534 62 HOH HOH . E 3 HOH A 35 535 71 HOH HOH . E 3 HOH A 36 536 38 HOH HOH . E 3 HOH A 37 537 41 HOH HOH . E 3 HOH A 38 538 84 HOH HOH . E 3 HOH A 39 539 90 HOH HOH . E 3 HOH A 40 540 82 HOH HOH . E 3 HOH A 41 541 36 HOH HOH . E 3 HOH A 42 542 81 HOH HOH . E 3 HOH A 43 543 40 HOH HOH . E 3 HOH A 44 544 23 HOH HOH . E 3 HOH A 45 545 63 HOH HOH . E 3 HOH A 46 546 4 HOH HOH . E 3 HOH A 47 547 102 HOH HOH . E 3 HOH A 48 548 76 HOH HOH . E 3 HOH A 49 549 98 HOH HOH . E 3 HOH A 50 550 39 HOH HOH . E 3 HOH A 51 551 44 HOH HOH . E 3 HOH A 52 552 79 HOH HOH . E 3 HOH A 53 553 46 HOH HOH . E 3 HOH A 54 554 96 HOH HOH . E 3 HOH A 55 555 104 HOH HOH . E 3 HOH A 56 556 80 HOH HOH . E 3 HOH A 57 557 67 HOH HOH . E 3 HOH A 58 558 74 HOH HOH . E 3 HOH A 59 559 35 HOH HOH . E 3 HOH A 60 560 105 HOH HOH . E 3 HOH A 61 561 106 HOH HOH . E 3 HOH A 62 562 14 HOH HOH . E 3 HOH A 63 563 107 HOH HOH . E 3 HOH A 64 564 22 HOH HOH . E 3 HOH A 65 565 86 HOH HOH . F 3 HOH B 1 501 93 HOH HOH . F 3 HOH B 2 502 26 HOH HOH . F 3 HOH B 3 503 59 HOH HOH . F 3 HOH B 4 504 21 HOH HOH . F 3 HOH B 5 505 49 HOH HOH . F 3 HOH B 6 506 15 HOH HOH . F 3 HOH B 7 507 91 HOH HOH . F 3 HOH B 8 508 58 HOH HOH . F 3 HOH B 9 509 57 HOH HOH . F 3 HOH B 10 510 27 HOH HOH . F 3 HOH B 11 511 70 HOH HOH . F 3 HOH B 12 512 54 HOH HOH . F 3 HOH B 13 513 52 HOH HOH . F 3 HOH B 14 514 3 HOH HOH . F 3 HOH B 15 515 1 HOH HOH . F 3 HOH B 16 516 5 HOH HOH . F 3 HOH B 17 517 12 HOH HOH . F 3 HOH B 18 518 10 HOH HOH . F 3 HOH B 19 519 53 HOH HOH . F 3 HOH B 20 520 103 HOH HOH . F 3 HOH B 21 521 95 HOH HOH . F 3 HOH B 22 522 77 HOH HOH . F 3 HOH B 23 523 61 HOH HOH . F 3 HOH B 24 524 68 HOH HOH . F 3 HOH B 25 525 87 HOH HOH . F 3 HOH B 26 526 60 HOH HOH . F 3 HOH B 27 527 34 HOH HOH . F 3 HOH B 28 528 94 HOH HOH . F 3 HOH B 29 529 72 HOH HOH . F 3 HOH B 30 530 75 HOH HOH . F 3 HOH B 31 531 9 HOH HOH . F 3 HOH B 32 532 11 HOH HOH . F 3 HOH B 33 533 50 HOH HOH . F 3 HOH B 34 534 48 HOH HOH . F 3 HOH B 35 535 73 HOH HOH . F 3 HOH B 36 536 43 HOH HOH . F 3 HOH B 37 537 83 HOH HOH . F 3 HOH B 38 538 56 HOH HOH . F 3 HOH B 39 539 19 HOH HOH . F 3 HOH B 40 540 47 HOH HOH . F 3 HOH B 41 541 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 X77 . . . C 2 -25.337 21.558 4.924 1 31.33 ? C02 X77 401 A 1 HETATM 2 C C04 X77 . . . C 2 -27.278 20.068 5.861 1 34.35 ? C04 X77 401 A 1 HETATM 3 C C05 X77 . . . C 2 -28.746 19.826 5.524 1 31.07 ? C05 X77 401 A 1 HETATM 4 C C07 X77 . . . C 2 -30.156 20.606 7.642 1 41.5 ? C07 X77 401 A 1 HETATM 5 C C08 X77 . . . C 2 -30.935 21.847 7.248 1 44.59 ? C08 X77 401 A 1 HETATM 6 C C09 X77 . . . C 2 -32.119 21.354 6.427 1 43.97 ? C09 X77 401 A 1 HETATM 7 C C10 X77 . . . C 2 -33.139 20.769 7.397 1 40.08 ? C10 X77 401 A 1 HETATM 8 C C11 X77 . . . C 2 -32.54 19.664 8.269 1 39.1 ? C11 X77 401 A 1 HETATM 9 C C12 X77 . . . C 2 -31.013 19.632 8.453 1 39.17 ? C12 X77 401 A 1 HETATM 10 C C14 X77 . . . C 2 -26.604 18.745 5.492 1 32.93 ? C14 X77 401 A 1 HETATM 11 C C15 X77 . . . C 2 -26.109 17.853 6.582 1 30.73 ? C15 X77 401 A 1 HETATM 12 C C16 X77 . . . C 2 -25.479 16.527 6.231 1 30.42 ? C16 X77 401 A 1 HETATM 13 C C17 X77 . . . C 2 -25.35 16.137 4.76 1 31.34 ? C17 X77 401 A 1 HETATM 14 C C19 X77 . . . C 2 -26.465 18.343 4.024 1 31.48 ? C19 X77 401 A 1 HETATM 15 C C20 X77 . . . C 2 -27.82 22.075 4.519 1 32.18 ? C20 X77 401 A 1 HETATM 16 C C21 X77 . . . C 2 -28.333 21.908 3.087 1 30.29 ? C21 X77 401 A 1 HETATM 17 C C22 X77 . . . C 2 -29.452 22.82 2.594 1 30.2 ? C22 X77 401 A 1 HETATM 18 C C23 X77 . . . C 2 -30.005 23.877 3.535 1 31.6 ? C23 X77 401 A 1 HETATM 19 C C24 X77 . . . C 2 -31.118 24.793 3.046 1 37.19 ? C24 X77 401 A 1 HETATM 20 C C25 X77 . . . C 2 -30.563 26.212 2.98 1 32.28 ? C25 X77 401 A 1 HETATM 21 C C26 X77 . . . C 2 -32.238 24.651 4.056 1 36.86 ? C26 X77 401 A 1 HETATM 22 C C27 X77 . . . C 2 -31.604 24.301 1.657 1 33.8 ? C27 X77 401 A 1 HETATM 23 C C28 X77 . . . C 2 -29.49 24.056 4.968 1 33.57 ? C28 X77 401 A 1 HETATM 24 C C29 X77 . . . C 2 -28.375 23.124 5.464 1 34.83 ? C29 X77 401 A 1 HETATM 25 C C30 X77 . . . C 2 -24.814 22.796 4.151 1 32.25 ? C30 X77 401 A 1 HETATM 26 C C31 X77 . . . C 2 -25.544 23.822 3.595 1 30.04 ? C31 X77 401 A 1 HETATM 27 C C33 X77 . . . C 2 -23.451 24.193 3.231 1 33.13 ? C33 X77 401 A 1 HETATM 28 N N03 X77 . . . C 2 -26.767 21.215 5.075 1 32.31 ? N03 X77 401 A 1 HETATM 29 N N06 X77 . . . C 2 -29.957 20.041 6.324 1 41.68 ? N06 X77 401 A 1 HETATM 30 N N18 X77 . . . C 2 -25.862 17.025 3.676 1 27.29 ? N18 X77 401 A 1 HETATM 31 N N32 X77 . . . C 2 -24.696 24.657 3.042 1 32.41 ? N32 X77 401 A 1 HETATM 32 N N34 X77 . . . C 2 -23.542 23.039 3.917 1 30.37 ? N34 X77 401 A 1 HETATM 33 O O01 X77 . . . C 2 -24.55 20.863 5.431 1 34.19 ? O01 X77 401 A 1 HETATM 34 O O13 X77 . . . C 2 -29.015 19.368 4.478 1 34.29 ? O13 X77 401 A 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #