data_8YKK # _model_server_result.job_id qzjUiGDL8llx9GxidcJCeA _model_server_result.datetime_utc '2025-06-30 03:12:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ykk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8YKK # _exptl.entry_id 8YKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.583 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.549 _cell.angle_gamma 90 _cell.entry_id 8YKK _cell.length_a 106.44 _cell.length_b 84.872 _cell.length_c 54.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N5 O2' _chem_comp.formula_weight 459.583 _chem_comp.id X77 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 N32 X77 sing 376 n y C33 N34 X77 doub 377 n y N32 C31 X77 sing 378 n y N34 C30 X77 sing 379 n y C31 C30 X77 doub 380 n y C30 C02 X77 sing 381 n n C27 C24 X77 sing 382 n n C02 O01 X77 doub 383 n n C02 N03 X77 sing 384 n n C26 C24 X77 sing 385 n n C28 C29 X77 doub 386 n y C28 C23 X77 sing 387 n y C24 C23 X77 sing 388 n n C24 C25 X77 sing 389 n n C29 C20 X77 sing 390 n y C23 C22 X77 doub 391 n y C20 N03 X77 sing 392 n n C20 C21 X77 doub 393 n y C22 C21 X77 sing 394 n y N03 C04 X77 sing 395 n n C19 N18 X77 doub 396 n y C19 C14 X77 sing 397 n y C04 C14 X77 sing 398 n n C04 C05 X77 sing 399 n n N18 C17 X77 sing 400 n y C14 C15 X77 doub 401 n y O13 C05 X77 doub 402 n n C17 C16 X77 doub 403 n y C05 N06 X77 sing 404 n n C15 C16 X77 sing 405 n y N06 C07 X77 sing 406 n n C12 C07 X77 sing 407 n n C12 C11 X77 sing 408 n n C07 C08 X77 sing 409 n n C11 C10 X77 sing 410 n n C08 C09 X77 sing 411 n n C10 C09 X77 sing 412 n n C04 H041 X77 sing 413 n n C07 H071 X77 sing 414 n n C08 H081 X77 sing 415 n n C08 H082 X77 sing 416 n n C09 H091 X77 sing 417 n n C09 H092 X77 sing 418 n n C10 H101 X77 sing 419 n n C10 H102 X77 sing 420 n n C11 H112 X77 sing 421 n n C11 H111 X77 sing 422 n n C12 H121 X77 sing 423 n n C12 H122 X77 sing 424 n n C15 H151 X77 sing 425 n n C16 H161 X77 sing 426 n n C17 H171 X77 sing 427 n n C19 H191 X77 sing 428 n n C21 H211 X77 sing 429 n n C22 H221 X77 sing 430 n n C25 H251 X77 sing 431 n n C25 H252 X77 sing 432 n n C25 H253 X77 sing 433 n n C26 H261 X77 sing 434 n n C26 H263 X77 sing 435 n n C26 H262 X77 sing 436 n n C27 H272 X77 sing 437 n n C27 H273 X77 sing 438 n n C27 H271 X77 sing 439 n n C28 H281 X77 sing 440 n n C29 H291 X77 sing 441 n n C31 H311 X77 sing 442 n n C33 H331 X77 sing 443 n n N06 H061 X77 sing 444 n n N32 H1 X77 sing 445 n n # _atom_sites.entry_id 8YKK _atom_sites.fract_transf_matrix[1][1] 0.009395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002614 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X77 A 1 301 1 X77 LIG . C 3 HOH A 1 401 3 HOH HOH . C 3 HOH A 2 402 8 HOH HOH . C 3 HOH A 3 403 16 HOH HOH . C 3 HOH A 4 404 1 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 23 HOH HOH . C 3 HOH A 7 407 10 HOH HOH . C 3 HOH A 8 408 7 HOH HOH . C 3 HOH A 9 409 12 HOH HOH . C 3 HOH A 10 410 9 HOH HOH . C 3 HOH A 11 411 19 HOH HOH . C 3 HOH A 12 412 22 HOH HOH . C 3 HOH A 13 413 20 HOH HOH . C 3 HOH A 14 414 4 HOH HOH . C 3 HOH A 15 415 14 HOH HOH . C 3 HOH A 16 416 6 HOH HOH . C 3 HOH A 17 417 21 HOH HOH . C 3 HOH A 18 418 11 HOH HOH . C 3 HOH A 19 419 15 HOH HOH . C 3 HOH A 20 420 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 X77 . . . B 2 -22.844 -41.207 1.013 1 53.16 ? C02 X77 301 A 1 HETATM 2 C C04 X77 . . . B 2 -22.801 -38.686 1.593 1 53.85 ? C04 X77 301 A 1 HETATM 3 C C05 X77 . . . B 2 -23.247 -37.727 2.684 1 51.95 ? C05 X77 301 A 1 HETATM 4 C C07 X77 . . . B 2 -24.791 -35.836 3.447 1 59.42 ? C07 X77 301 A 1 HETATM 5 C C08 X77 . . . B 2 -25.68 -34.816 2.733 1 59.59 ? C08 X77 301 A 1 HETATM 6 C C09 X77 . . . B 2 -27.135 -34.9 3.176 1 67.2 ? C09 X77 301 A 1 HETATM 7 C C10 X77 . . . B 2 -27.237 -34.777 4.696 1 68.41 ? C10 X77 301 A 1 HETATM 8 C C11 X77 . . . B 2 -26.561 -35.957 5.395 1 64.9 ? C11 X77 301 A 1 HETATM 9 C C12 X77 . . . B 2 -25.461 -36.647 4.568 1 58.43 ? C12 X77 301 A 1 HETATM 10 C C14 X77 . . . B 2 -21.283 -38.453 1.491 1 52.65 ? C14 X77 301 A 1 HETATM 11 C C15 X77 . . . B 2 -20.774 -37.529 0.43 1 52.46 ? C15 X77 301 A 1 HETATM 12 C C16 X77 . . . B 2 -19.31 -37.246 0.299 1 52.92 ? C16 X77 301 A 1 HETATM 13 C C17 X77 . . . B 2 -18.351 -37.913 1.28 1 52.4 ? C17 X77 301 A 1 HETATM 14 C C19 X77 . . . B 2 -20.318 -39.108 2.47 1 47.99 ? C19 X77 301 A 1 HETATM 15 C C20 X77 . . . B 2 -24.088 -40.281 3.102 1 54.69 ? C20 X77 301 A 1 HETATM 16 C C21 X77 . . . B 2 -25.587 -40.15 2.908 1 52.13 ? C21 X77 301 A 1 HETATM 17 C C22 X77 . . . B 2 -26.525 -40.35 4.11 1 59.04 ? C22 X77 301 A 1 HETATM 18 C C23 X77 . . . B 2 -25.977 -40.687 5.509 1 54.34 ? C23 X77 301 A 1 HETATM 19 C C24 X77 . . . B 2 -27.002 -40.852 6.656 1 50.49 ? C24 X77 301 A 1 HETATM 20 C C25 X77 . . . B 2 -26.31 -41.154 7.981 1 45.03 ? C25 X77 301 A 1 HETATM 21 C C26 X77 . . . B 2 -28.002 -41.958 6.347 1 52.37 ? C26 X77 301 A 1 HETATM 22 C C27 X77 . . . B 2 -27.754 -39.501 6.745 1 53.46 ? C27 X77 301 A 1 HETATM 23 C C28 X77 . . . B 2 -24.467 -40.811 5.717 1 47.29 ? C28 X77 301 A 1 HETATM 24 C C29 X77 . . . B 2 -23.527 -40.614 4.504 1 50.01 ? C29 X77 301 A 1 HETATM 25 C C30 X77 . . . B 2 -23.273 -42.668 1.27 1 55.66 ? C30 X77 301 A 1 HETATM 26 C C31 X77 . . . B 2 -24.209 -43.104 2.167 1 45.34 ? C31 X77 301 A 1 HETATM 27 C C33 X77 . . . B 2 -23.394 -44.811 1.137 1 58.92 ? C33 X77 301 A 1 HETATM 28 N N03 X77 . . . B 2 -23.221 -40.075 1.908 1 51.52 ? N03 X77 301 A 1 HETATM 29 N N06 X77 . . . B 2 -24.336 -36.783 2.41 1 61.28 ? N06 X77 301 A 1 HETATM 30 N N18 X77 . . . B 2 -18.856 -38.824 2.34 1 51.22 ? N18 X77 301 A 1 HETATM 31 N N32 X77 . . . B 2 -24.276 -44.408 2.078 1 55.3 ? N32 X77 301 A 1 HETATM 32 N N34 X77 . . . B 2 -22.779 -43.718 0.641 1 56.72 ? N34 X77 301 A 1 HETATM 33 O O01 X77 . . . B 2 -22.169 -41.007 0.066 1 55.89 ? O01 X77 301 A 1 HETATM 34 O O13 X77 . . . B 2 -22.703 -37.737 3.74 1 51.46 ? O13 X77 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #