data_8YKL # _model_server_result.job_id ss0JfwM_s1yLmT9KaCmhvQ _model_server_result.datetime_utc '2025-06-27 08:28:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ykl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8YKL # _exptl.entry_id 8YKL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.583 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YKL _cell.length_a 79.709 _cell.length_b 94.876 _cell.length_c 98.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YKL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H33 N5 O2' _chem_comp.formula_weight 459.583 _chem_comp.id X77 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 N32 X77 sing 376 n y C33 N34 X77 doub 377 n y N32 C31 X77 sing 378 n y N34 C30 X77 sing 379 n y C31 C30 X77 doub 380 n y C30 C02 X77 sing 381 n n C27 C24 X77 sing 382 n n C02 O01 X77 doub 383 n n C02 N03 X77 sing 384 n n C26 C24 X77 sing 385 n n C28 C29 X77 doub 386 n y C28 C23 X77 sing 387 n y C24 C23 X77 sing 388 n n C24 C25 X77 sing 389 n n C29 C20 X77 sing 390 n y C23 C22 X77 doub 391 n y C20 N03 X77 sing 392 n n C20 C21 X77 doub 393 n y C22 C21 X77 sing 394 n y N03 C04 X77 sing 395 n n C19 N18 X77 doub 396 n y C19 C14 X77 sing 397 n y C04 C14 X77 sing 398 n n C04 C05 X77 sing 399 n n N18 C17 X77 sing 400 n y C14 C15 X77 doub 401 n y O13 C05 X77 doub 402 n n C17 C16 X77 doub 403 n y C05 N06 X77 sing 404 n n C15 C16 X77 sing 405 n y N06 C07 X77 sing 406 n n C12 C07 X77 sing 407 n n C12 C11 X77 sing 408 n n C07 C08 X77 sing 409 n n C11 C10 X77 sing 410 n n C08 C09 X77 sing 411 n n C10 C09 X77 sing 412 n n C04 H041 X77 sing 413 n n C07 H071 X77 sing 414 n n C08 H081 X77 sing 415 n n C08 H082 X77 sing 416 n n C09 H091 X77 sing 417 n n C09 H092 X77 sing 418 n n C10 H101 X77 sing 419 n n C10 H102 X77 sing 420 n n C11 H112 X77 sing 421 n n C11 H111 X77 sing 422 n n C12 H121 X77 sing 423 n n C12 H122 X77 sing 424 n n C15 H151 X77 sing 425 n n C16 H161 X77 sing 426 n n C17 H171 X77 sing 427 n n C19 H191 X77 sing 428 n n C21 H211 X77 sing 429 n n C22 H221 X77 sing 430 n n C25 H251 X77 sing 431 n n C25 H252 X77 sing 432 n n C25 H253 X77 sing 433 n n C26 H261 X77 sing 434 n n C26 H263 X77 sing 435 n n C26 H262 X77 sing 436 n n C27 H272 X77 sing 437 n n C27 H273 X77 sing 438 n n C27 H271 X77 sing 439 n n C28 H281 X77 sing 440 n n C29 H291 X77 sing 441 n n C31 H311 X77 sing 442 n n C33 H331 X77 sing 443 n n N06 H061 X77 sing 444 n n N32 H1 X77 sing 445 n n # _atom_sites.entry_id 8YKL _atom_sites.fract_transf_matrix[1][1] 0.012546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01054 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X77 A 1 401 1 X77 LIG . D 2 X77 B 1 401 2 X77 LIG . E 3 HOH A 1 501 71 HOH HOH . E 3 HOH A 2 502 5 HOH HOH . E 3 HOH A 3 503 24 HOH HOH . E 3 HOH A 4 504 109 HOH HOH . E 3 HOH A 5 505 175 HOH HOH . E 3 HOH A 6 506 131 HOH HOH . E 3 HOH A 7 507 99 HOH HOH . E 3 HOH A 8 508 142 HOH HOH . E 3 HOH A 9 509 169 HOH HOH . E 3 HOH A 10 510 79 HOH HOH . E 3 HOH A 11 511 26 HOH HOH . E 3 HOH A 12 512 73 HOH HOH . E 3 HOH A 13 513 48 HOH HOH . E 3 HOH A 14 514 135 HOH HOH . E 3 HOH A 15 515 179 HOH HOH . E 3 HOH A 16 516 139 HOH HOH . E 3 HOH A 17 517 36 HOH HOH . E 3 HOH A 18 518 127 HOH HOH . E 3 HOH A 19 519 68 HOH HOH . E 3 HOH A 20 520 86 HOH HOH . E 3 HOH A 21 521 46 HOH HOH . E 3 HOH A 22 522 51 HOH HOH . E 3 HOH A 23 523 114 HOH HOH . E 3 HOH A 24 524 107 HOH HOH . E 3 HOH A 25 525 11 HOH HOH . E 3 HOH A 26 526 18 HOH HOH . E 3 HOH A 27 527 49 HOH HOH . E 3 HOH A 28 528 55 HOH HOH . E 3 HOH A 29 529 35 HOH HOH . E 3 HOH A 30 530 141 HOH HOH . E 3 HOH A 31 531 23 HOH HOH . E 3 HOH A 32 532 6 HOH HOH . E 3 HOH A 33 533 7 HOH HOH . E 3 HOH A 34 534 95 HOH HOH . E 3 HOH A 35 535 106 HOH HOH . E 3 HOH A 36 536 16 HOH HOH . E 3 HOH A 37 537 119 HOH HOH . E 3 HOH A 38 538 130 HOH HOH . E 3 HOH A 39 539 40 HOH HOH . E 3 HOH A 40 540 9 HOH HOH . E 3 HOH A 41 541 156 HOH HOH . E 3 HOH A 42 542 32 HOH HOH . E 3 HOH A 43 543 177 HOH HOH . E 3 HOH A 44 544 108 HOH HOH . E 3 HOH A 45 545 120 HOH HOH . E 3 HOH A 46 546 98 HOH HOH . E 3 HOH A 47 547 80 HOH HOH . E 3 HOH A 48 548 185 HOH HOH . E 3 HOH A 49 549 154 HOH HOH . E 3 HOH A 50 550 3 HOH HOH . E 3 HOH A 51 551 29 HOH HOH . E 3 HOH A 52 552 17 HOH HOH . E 3 HOH A 53 553 58 HOH HOH . E 3 HOH A 54 554 111 HOH HOH . E 3 HOH A 55 555 88 HOH HOH . E 3 HOH A 56 556 54 HOH HOH . E 3 HOH A 57 557 164 HOH HOH . E 3 HOH A 58 558 168 HOH HOH . E 3 HOH A 59 559 52 HOH HOH . E 3 HOH A 60 560 102 HOH HOH . E 3 HOH A 61 561 85 HOH HOH . E 3 HOH A 62 562 122 HOH HOH . E 3 HOH A 63 563 42 HOH HOH . E 3 HOH A 64 564 183 HOH HOH . E 3 HOH A 65 565 25 HOH HOH . E 3 HOH A 66 566 121 HOH HOH . E 3 HOH A 67 567 78 HOH HOH . E 3 HOH A 68 568 13 HOH HOH . E 3 HOH A 69 569 124 HOH HOH . E 3 HOH A 70 570 10 HOH HOH . E 3 HOH A 71 571 174 HOH HOH . E 3 HOH A 72 572 105 HOH HOH . E 3 HOH A 73 573 172 HOH HOH . E 3 HOH A 74 574 171 HOH HOH . E 3 HOH A 75 575 126 HOH HOH . E 3 HOH A 76 576 123 HOH HOH . E 3 HOH A 77 577 20 HOH HOH . E 3 HOH A 78 578 90 HOH HOH . E 3 HOH A 79 579 66 HOH HOH . E 3 HOH A 80 580 100 HOH HOH . E 3 HOH A 81 581 147 HOH HOH . E 3 HOH A 82 582 34 HOH HOH . E 3 HOH A 83 583 82 HOH HOH . E 3 HOH A 84 584 158 HOH HOH . E 3 HOH A 85 585 57 HOH HOH . E 3 HOH A 86 586 31 HOH HOH . E 3 HOH A 87 587 112 HOH HOH . E 3 HOH A 88 588 125 HOH HOH . E 3 HOH A 89 589 4 HOH HOH . E 3 HOH A 90 590 75 HOH HOH . E 3 HOH A 91 591 45 HOH HOH . E 3 HOH A 92 592 134 HOH HOH . E 3 HOH A 93 593 8 HOH HOH . E 3 HOH A 94 594 113 HOH HOH . E 3 HOH A 95 595 33 HOH HOH . E 3 HOH A 96 596 53 HOH HOH . E 3 HOH A 97 597 117 HOH HOH . E 3 HOH A 98 598 133 HOH HOH . E 3 HOH A 99 599 104 HOH HOH . E 3 HOH A 100 600 62 HOH HOH . E 3 HOH A 101 601 103 HOH HOH . E 3 HOH A 102 602 59 HOH HOH . E 3 HOH A 103 603 145 HOH HOH . E 3 HOH A 104 604 157 HOH HOH . E 3 HOH A 105 605 180 HOH HOH . E 3 HOH A 106 606 173 HOH HOH . E 3 HOH A 107 607 166 HOH HOH . E 3 HOH A 108 608 161 HOH HOH . E 3 HOH A 109 609 167 HOH HOH . E 3 HOH A 110 610 144 HOH HOH . E 3 HOH A 111 611 137 HOH HOH . E 3 HOH A 112 612 153 HOH HOH . E 3 HOH A 113 613 70 HOH HOH . E 3 HOH A 114 614 150 HOH HOH . E 3 HOH A 115 615 44 HOH HOH . E 3 HOH A 116 616 146 HOH HOH . E 3 HOH A 117 617 74 HOH HOH . F 3 HOH B 1 501 143 HOH HOH . F 3 HOH B 2 502 165 HOH HOH . F 3 HOH B 3 503 87 HOH HOH . F 3 HOH B 4 504 61 HOH HOH . F 3 HOH B 5 505 91 HOH HOH . F 3 HOH B 6 506 64 HOH HOH . F 3 HOH B 7 507 60 HOH HOH . F 3 HOH B 8 508 148 HOH HOH . F 3 HOH B 9 509 63 HOH HOH . F 3 HOH B 10 510 43 HOH HOH . F 3 HOH B 11 511 186 HOH HOH . F 3 HOH B 12 512 160 HOH HOH . F 3 HOH B 13 513 92 HOH HOH . F 3 HOH B 14 514 81 HOH HOH . F 3 HOH B 15 515 97 HOH HOH . F 3 HOH B 16 516 110 HOH HOH . F 3 HOH B 17 517 149 HOH HOH . F 3 HOH B 18 518 138 HOH HOH . F 3 HOH B 19 519 21 HOH HOH . F 3 HOH B 20 520 14 HOH HOH . F 3 HOH B 21 521 67 HOH HOH . F 3 HOH B 22 522 72 HOH HOH . F 3 HOH B 23 523 83 HOH HOH . F 3 HOH B 24 524 187 HOH HOH . F 3 HOH B 25 525 37 HOH HOH . F 3 HOH B 26 526 22 HOH HOH . F 3 HOH B 27 527 27 HOH HOH . F 3 HOH B 28 528 84 HOH HOH . F 3 HOH B 29 529 89 HOH HOH . F 3 HOH B 30 530 132 HOH HOH . F 3 HOH B 31 531 96 HOH HOH . F 3 HOH B 32 532 15 HOH HOH . F 3 HOH B 33 533 19 HOH HOH . F 3 HOH B 34 534 12 HOH HOH . F 3 HOH B 35 535 101 HOH HOH . F 3 HOH B 36 536 151 HOH HOH . F 3 HOH B 37 537 170 HOH HOH . F 3 HOH B 38 538 28 HOH HOH . F 3 HOH B 39 539 115 HOH HOH . F 3 HOH B 40 540 76 HOH HOH . F 3 HOH B 41 541 41 HOH HOH . F 3 HOH B 42 542 181 HOH HOH . F 3 HOH B 43 543 30 HOH HOH . F 3 HOH B 44 544 39 HOH HOH . F 3 HOH B 45 545 178 HOH HOH . F 3 HOH B 46 546 50 HOH HOH . F 3 HOH B 47 547 2 HOH HOH . F 3 HOH B 48 548 65 HOH HOH . F 3 HOH B 49 549 118 HOH HOH . F 3 HOH B 50 550 184 HOH HOH . F 3 HOH B 51 551 182 HOH HOH . F 3 HOH B 52 552 38 HOH HOH . F 3 HOH B 53 553 162 HOH HOH . F 3 HOH B 54 554 56 HOH HOH . F 3 HOH B 55 555 93 HOH HOH . F 3 HOH B 56 556 129 HOH HOH . F 3 HOH B 57 557 94 HOH HOH . F 3 HOH B 58 558 116 HOH HOH . F 3 HOH B 59 559 136 HOH HOH . F 3 HOH B 60 560 1 HOH HOH . F 3 HOH B 61 561 176 HOH HOH . F 3 HOH B 62 562 163 HOH HOH . F 3 HOH B 63 563 128 HOH HOH . F 3 HOH B 64 564 140 HOH HOH . F 3 HOH B 65 565 69 HOH HOH . F 3 HOH B 66 566 159 HOH HOH . F 3 HOH B 67 567 152 HOH HOH . F 3 HOH B 68 568 47 HOH HOH . F 3 HOH B 69 569 77 HOH HOH . F 3 HOH B 70 570 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 X77 . . . D 2 -9.517 33.726 -49.744 1 33.05 ? C02 X77 401 B 1 HETATM 2 C C04 X77 . . . D 2 -10.221 36.137 -49.301 1 36.45 ? C04 X77 401 B 1 HETATM 3 C C05 X77 . . . D 2 -11.151 37.192 -49.876 1 33.73 ? C05 X77 401 B 1 HETATM 4 C C07 X77 . . . D 2 -11.433 39.393 -51.043 1 42.91 ? C07 X77 401 B 1 HETATM 5 C C08 X77 . . . D 2 -10.636 40.699 -51.062 1 42.07 ? C08 X77 401 B 1 HETATM 6 C C09 X77 . . . D 2 -11.216 41.766 -51.993 1 48.4 ? C09 X77 401 B 1 HETATM 7 C C10 X77 . . . D 2 -12.478 41.309 -52.73 1 49.92 ? C10 X77 401 B 1 HETATM 8 C C11 X77 . . . D 2 -12.247 39.968 -53.414 1 46.02 ? C11 X77 401 B 1 HETATM 9 C C12 X77 . . . D 2 -11.916 38.864 -52.401 1 44.11 ? C12 X77 401 B 1 HETATM 10 C C14 X77 . . . D 2 -10.754 35.851 -47.905 1 31.72 ? C14 X77 401 B 1 HETATM 11 C C15 X77 . . . D 2 -9.961 36.339 -46.748 1 33.1 ? C15 X77 401 B 1 HETATM 12 C C16 X77 . . . D 2 -10.46 36.095 -45.373 1 34.45 ? C16 X77 401 B 1 HETATM 13 C C17 X77 . . . D 2 -11.778 35.365 -45.179 1 28.04 ? C17 X77 401 B 1 HETATM 14 C C19 X77 . . . D 2 -12.08 35.124 -47.727 1 31.12 ? C19 X77 401 B 1 HETATM 15 C C20 X77 . . . D 2 -10.806 35.081 -51.51 1 35.14 ? C20 X77 401 B 1 HETATM 16 C C21 X77 . . . D 2 -9.885 35.654 -52.575 1 34.3 ? C21 X77 401 B 1 HETATM 17 C C22 X77 . . . D 2 -10.419 35.828 -53.997 1 35.48 ? C22 X77 401 B 1 HETATM 18 C C23 X77 . . . D 2 -11.868 35.43 -54.308 1 33.96 ? C23 X77 401 B 1 HETATM 19 C C24 X77 . . . D 2 -12.336 35.625 -55.751 1 41.8 ? C24 X77 401 B 1 HETATM 20 C C25 X77 . . . D 2 -11.991 37.051 -56.16 1 48.14 ? C25 X77 401 B 1 HETATM 21 C C26 X77 . . . D 2 -13.827 35.4 -55.868 1 36.52 ? C26 X77 401 B 1 HETATM 22 C C27 X77 . . . D 2 -11.547 34.598 -56.602 1 42.26 ? C27 X77 401 B 1 HETATM 23 C C28 X77 . . . D 2 -12.799 34.854 -53.244 1 35.05 ? C28 X77 401 B 1 HETATM 24 C C29 X77 . . . D 2 -12.258 34.678 -51.813 1 32.8 ? C29 X77 401 B 1 HETATM 25 C C30 X77 . . . D 2 -9.441 32.472 -50.633 1 34.29 ? C30 X77 401 B 1 HETATM 26 C C31 X77 . . . D 2 -8.76 31.34 -50.297 1 31.68 ? C31 X77 401 B 1 HETATM 27 C C33 X77 . . . D 2 -9.664 31.049 -52.229 1 34.65 ? C33 X77 401 B 1 HETATM 28 N N03 X77 . . . D 2 -10.204 34.957 -50.172 1 32.88 ? N03 X77 401 B 1 HETATM 29 N N06 X77 . . . D 2 -10.545 38.372 -50.485 1 38.22 ? N06 X77 401 B 1 HETATM 30 N N18 X77 . . . D 2 -12.56 34.9 -46.343 1 29.05 ? N18 X77 401 B 1 HETATM 31 N N32 X77 . . . D 2 -8.906 30.48 -51.275 1 38.62 ? N32 X77 401 B 1 HETATM 32 N N34 X77 . . . D 2 -9.983 32.292 -51.814 1 37.47 ? N34 X77 401 B 1 HETATM 33 O O01 X77 . . . D 2 -9.015 33.706 -48.68 1 34.44 ? O01 X77 401 B 1 HETATM 34 O O13 X77 . . . D 2 -12.331 37.079 -49.829 1 30.44 ? O13 X77 401 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #