data_8YKM # _model_server_result.job_id Aa27rIoJR1p_hUVIAzBXFQ _model_server_result.datetime_utc '2025-02-17 23:45:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ykm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8YKM # _exptl.entry_id 8YKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.583 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YKM _cell.length_a 67.81 _cell.length_b 101.039 _cell.length_c 104.448 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C27 H33 N5 O2' _chem_comp.formula_weight 459.583 _chem_comp.id X77 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 N32 X77 sing 376 n y C33 N34 X77 doub 377 n y N32 C31 X77 sing 378 n y N34 C30 X77 sing 379 n y C31 C30 X77 doub 380 n y C30 C02 X77 sing 381 n n C27 C24 X77 sing 382 n n C02 O01 X77 doub 383 n n C02 N03 X77 sing 384 n n C26 C24 X77 sing 385 n n C28 C29 X77 doub 386 n y C28 C23 X77 sing 387 n y C24 C23 X77 sing 388 n n C24 C25 X77 sing 389 n n C29 C20 X77 sing 390 n y C23 C22 X77 doub 391 n y C20 N03 X77 sing 392 n n C20 C21 X77 doub 393 n y C22 C21 X77 sing 394 n y N03 C04 X77 sing 395 n n C19 N18 X77 doub 396 n y C19 C14 X77 sing 397 n y C04 C14 X77 sing 398 n n C04 C05 X77 sing 399 n n N18 C17 X77 sing 400 n y C14 C15 X77 doub 401 n y O13 C05 X77 doub 402 n n C17 C16 X77 doub 403 n y C05 N06 X77 sing 404 n n C15 C16 X77 sing 405 n y N06 C07 X77 sing 406 n n C12 C07 X77 sing 407 n n C12 C11 X77 sing 408 n n C07 C08 X77 sing 409 n n C11 C10 X77 sing 410 n n C08 C09 X77 sing 411 n n C10 C09 X77 sing 412 n n C04 H041 X77 sing 413 n n C07 H071 X77 sing 414 n n C08 H081 X77 sing 415 n n C08 H082 X77 sing 416 n n C09 H091 X77 sing 417 n n C09 H092 X77 sing 418 n n C10 H101 X77 sing 419 n n C10 H102 X77 sing 420 n n C11 H112 X77 sing 421 n n C11 H111 X77 sing 422 n n C12 H121 X77 sing 423 n n C12 H122 X77 sing 424 n n C15 H151 X77 sing 425 n n C16 H161 X77 sing 426 n n C17 H171 X77 sing 427 n n C19 H191 X77 sing 428 n n C21 H211 X77 sing 429 n n C22 H221 X77 sing 430 n n C25 H251 X77 sing 431 n n C25 H252 X77 sing 432 n n C25 H253 X77 sing 433 n n C26 H261 X77 sing 434 n n C26 H263 X77 sing 435 n n C26 H262 X77 sing 436 n n C27 H272 X77 sing 437 n n C27 H273 X77 sing 438 n n C27 H271 X77 sing 439 n n C28 H281 X77 sing 440 n n C29 H291 X77 sing 441 n n C31 H311 X77 sing 442 n n C33 H331 X77 sing 443 n n N06 H061 X77 sing 444 n n N32 H1 X77 sing 445 n n # _atom_sites.entry_id 8YKM _atom_sites.fract_transf_matrix[1][1] 0.014747 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X77 A 1 401 1 X77 LIG . D 2 X77 B 1 401 2 X77 LIG . E 3 HOH A 1 501 39 HOH HOH . E 3 HOH A 2 502 68 HOH HOH . E 3 HOH A 3 503 74 HOH HOH . E 3 HOH A 4 504 25 HOH HOH . E 3 HOH A 5 505 88 HOH HOH . E 3 HOH A 6 506 90 HOH HOH . E 3 HOH A 7 507 65 HOH HOH . E 3 HOH A 8 508 26 HOH HOH . E 3 HOH A 9 509 19 HOH HOH . E 3 HOH A 10 510 55 HOH HOH . E 3 HOH A 11 511 12 HOH HOH . E 3 HOH A 12 512 80 HOH HOH . E 3 HOH A 13 513 21 HOH HOH . E 3 HOH A 14 514 6 HOH HOH . E 3 HOH A 15 515 7 HOH HOH . E 3 HOH A 16 516 45 HOH HOH . E 3 HOH A 17 517 76 HOH HOH . E 3 HOH A 18 518 37 HOH HOH . E 3 HOH A 19 519 59 HOH HOH . E 3 HOH A 20 520 108 HOH HOH . E 3 HOH A 21 521 43 HOH HOH . E 3 HOH A 22 522 104 HOH HOH . E 3 HOH A 23 523 33 HOH HOH . E 3 HOH A 24 524 46 HOH HOH . E 3 HOH A 25 525 58 HOH HOH . E 3 HOH A 26 526 34 HOH HOH . E 3 HOH A 27 527 60 HOH HOH . E 3 HOH A 28 528 22 HOH HOH . E 3 HOH A 29 529 83 HOH HOH . E 3 HOH A 30 530 53 HOH HOH . E 3 HOH A 31 531 93 HOH HOH . E 3 HOH A 32 532 38 HOH HOH . E 3 HOH A 33 533 71 HOH HOH . E 3 HOH A 34 534 98 HOH HOH . E 3 HOH A 35 535 84 HOH HOH . E 3 HOH A 36 536 94 HOH HOH . E 3 HOH A 37 537 20 HOH HOH . E 3 HOH A 38 538 105 HOH HOH . E 3 HOH A 39 539 103 HOH HOH . E 3 HOH A 40 540 14 HOH HOH . E 3 HOH A 41 541 109 HOH HOH . E 3 HOH A 42 542 78 HOH HOH . E 3 HOH A 43 543 86 HOH HOH . E 3 HOH A 44 544 75 HOH HOH . E 3 HOH A 45 545 18 HOH HOH . E 3 HOH A 46 546 8 HOH HOH . E 3 HOH A 47 547 99 HOH HOH . E 3 HOH A 48 548 87 HOH HOH . E 3 HOH A 49 549 9 HOH HOH . E 3 HOH A 50 550 57 HOH HOH . E 3 HOH A 51 551 35 HOH HOH . E 3 HOH A 52 552 91 HOH HOH . E 3 HOH A 53 553 49 HOH HOH . E 3 HOH A 54 554 41 HOH HOH . E 3 HOH A 55 555 16 HOH HOH . E 3 HOH A 56 556 97 HOH HOH . E 3 HOH A 57 557 48 HOH HOH . E 3 HOH A 58 558 47 HOH HOH . E 3 HOH A 59 559 64 HOH HOH . E 3 HOH A 60 560 52 HOH HOH . E 3 HOH A 61 561 101 HOH HOH . E 3 HOH A 62 562 111 HOH HOH . E 3 HOH A 63 563 73 HOH HOH . E 3 HOH A 64 564 4 HOH HOH . E 3 HOH A 65 565 61 HOH HOH . E 3 HOH A 66 566 42 HOH HOH . E 3 HOH A 67 567 67 HOH HOH . E 3 HOH A 68 568 85 HOH HOH . E 3 HOH A 69 569 110 HOH HOH . F 3 HOH B 1 501 81 HOH HOH . F 3 HOH B 2 502 31 HOH HOH . F 3 HOH B 3 503 100 HOH HOH . F 3 HOH B 4 504 62 HOH HOH . F 3 HOH B 5 505 24 HOH HOH . F 3 HOH B 6 506 113 HOH HOH . F 3 HOH B 7 507 32 HOH HOH . F 3 HOH B 8 508 102 HOH HOH . F 3 HOH B 9 509 2 HOH HOH . F 3 HOH B 10 510 69 HOH HOH . F 3 HOH B 11 511 11 HOH HOH . F 3 HOH B 12 512 15 HOH HOH . F 3 HOH B 13 513 66 HOH HOH . F 3 HOH B 14 514 70 HOH HOH . F 3 HOH B 15 515 92 HOH HOH . F 3 HOH B 16 516 10 HOH HOH . F 3 HOH B 17 517 36 HOH HOH . F 3 HOH B 18 518 96 HOH HOH . F 3 HOH B 19 519 3 HOH HOH . F 3 HOH B 20 520 5 HOH HOH . F 3 HOH B 21 521 56 HOH HOH . F 3 HOH B 22 522 23 HOH HOH . F 3 HOH B 23 523 17 HOH HOH . F 3 HOH B 24 524 30 HOH HOH . F 3 HOH B 25 525 29 HOH HOH . F 3 HOH B 26 526 51 HOH HOH . F 3 HOH B 27 527 72 HOH HOH . F 3 HOH B 28 528 89 HOH HOH . F 3 HOH B 29 529 63 HOH HOH . F 3 HOH B 30 530 44 HOH HOH . F 3 HOH B 31 531 107 HOH HOH . F 3 HOH B 32 532 13 HOH HOH . F 3 HOH B 33 533 1 HOH HOH . F 3 HOH B 34 534 54 HOH HOH . F 3 HOH B 35 535 112 HOH HOH . F 3 HOH B 36 536 27 HOH HOH . F 3 HOH B 37 537 79 HOH HOH . F 3 HOH B 38 538 95 HOH HOH . F 3 HOH B 39 539 28 HOH HOH . F 3 HOH B 40 540 106 HOH HOH . F 3 HOH B 41 541 40 HOH HOH . F 3 HOH B 42 542 77 HOH HOH . F 3 HOH B 43 543 82 HOH HOH . F 3 HOH B 44 544 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 X77 . . . D 2 13.91 14.039 -4.267 1 32.49 ? C02 X77 401 B 1 HETATM 2 C C04 X77 . . . D 2 15.494 12.239 -5.257 1 32.92 ? C04 X77 401 B 1 HETATM 3 C C05 X77 . . . D 2 16.435 11.162 -4.742 1 34.35 ? C05 X77 401 B 1 HETATM 4 C C07 X77 . . . D 2 18.785 10.303 -4.414 1 35.25 ? C07 X77 401 B 1 HETATM 5 C C08 X77 . . . D 2 20.051 10.339 -5.281 1 36.71 ? C08 X77 401 B 1 HETATM 6 C C09 X77 . . . D 2 21.346 10.339 -4.476 1 41.81 ? C09 X77 401 B 1 HETATM 7 C C10 X77 . . . D 2 21.264 9.44 -3.247 1 37.48 ? C10 X77 401 B 1 HETATM 8 C C11 X77 . . . D 2 20.183 9.899 -2.263 1 41.04 ? C11 X77 401 B 1 HETATM 9 C C12 X77 . . . D 2 18.991 10.603 -2.924 1 35.94 ? C12 X77 401 B 1 HETATM 10 C C14 X77 . . . D 2 14.479 11.513 -6.133 1 33.85 ? C14 X77 401 B 1 HETATM 11 C C15 X77 . . . D 2 14.612 11.599 -7.621 1 34.07 ? C15 X77 401 B 1 HETATM 12 C C16 X77 . . . D 2 13.665 10.883 -8.522 1 32.47 ? C16 X77 401 B 1 HETATM 13 C C17 X77 . . . D 2 12.556 10.052 -7.888 1 33.51 ? C17 X77 401 B 1 HETATM 14 C C19 X77 . . . D 2 13.377 10.683 -5.497 1 30.83 ? C19 X77 401 B 1 HETATM 15 C C20 X77 . . . D 2 15.521 12.696 -2.789 1 29.95 ? C20 X77 401 B 1 HETATM 16 C C21 X77 . . . D 2 14.956 11.645 -1.82 1 29.58 ? C21 X77 401 B 1 HETATM 17 C C22 X77 . . . D 2 15.656 11.423 -0.473 1 31.47 ? C22 X77 401 B 1 HETATM 18 C C23 X77 . . . D 2 16.899 12.232 -0.113 1 33.46 ? C23 X77 401 B 1 HETATM 19 C C24 X77 . . . D 2 17.609 12.04 1.231 1 32.81 ? C24 X77 401 B 1 HETATM 20 C C25 X77 . . . D 2 17.12 10.764 1.9 1 28.64 ? C25 X77 401 B 1 HETATM 21 C C26 X77 . . . D 2 17.3 13.244 2.091 1 34.63 ? C26 X77 401 B 1 HETATM 22 C C27 X77 . . . D 2 19.142 11.961 0.976 1 37.24 ? C27 X77 401 B 1 HETATM 23 C C28 X77 . . . D 2 17.456 13.283 -1.08 1 32.4 ? C28 X77 401 B 1 HETATM 24 C C29 X77 . . . D 2 16.766 13.506 -2.43 1 30.84 ? C29 X77 401 B 1 HETATM 25 C C30 X77 . . . D 2 13.374 14.847 -3.065 1 29.5 ? C30 X77 401 B 1 HETATM 26 C C31 X77 . . . D 2 12.386 15.793 -3.13 1 31.96 ? C31 X77 401 B 1 HETATM 27 C C33 X77 . . . D 2 13.069 15.672 -1.089 1 29.28 ? C33 X77 401 B 1 HETATM 28 N N03 X77 . . . D 2 14.937 12.977 -4.106 1 31.51 ? N03 X77 401 B 1 HETATM 29 N N06 X77 . . . D 2 17.877 11.345 -4.919 1 33.33 ? N06 X77 401 B 1 HETATM 30 N N18 X77 . . . D 2 12.449 9.97 -6.408 1 32.04 ? N18 X77 401 B 1 HETATM 31 N N32 X77 . . . D 2 12.206 16.275 -1.923 1 37.14 ? N32 X77 401 B 1 HETATM 32 N N34 X77 . . . D 2 13.783 14.791 -1.816 1 33.83 ? N34 X77 401 B 1 HETATM 33 O O01 X77 . . . D 2 13.501 14.272 -5.352 1 33.64 ? O01 X77 401 B 1 HETATM 34 O O13 X77 . . . D 2 16.032 10.178 -4.206 1 30.35 ? O13 X77 401 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #