data_8YKN # _model_server_result.job_id oaoQqTcWbXEYy-jrLtUmLQ _model_server_result.datetime_utc '2025-06-26 20:41:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ykn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8YKN # _exptl.entry_id 8YKN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.583 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.871 _cell.angle_gamma 90 _cell.entry_id 8YKN _cell.length_a 114.172 _cell.length_b 54.387 _cell.length_c 45.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YKN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N5 O2' _chem_comp.formula_weight 459.583 _chem_comp.id X77 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 N32 X77 sing 376 n y C33 N34 X77 doub 377 n y N32 C31 X77 sing 378 n y N34 C30 X77 sing 379 n y C31 C30 X77 doub 380 n y C30 C02 X77 sing 381 n n C27 C24 X77 sing 382 n n C02 O01 X77 doub 383 n n C02 N03 X77 sing 384 n n C26 C24 X77 sing 385 n n C28 C29 X77 doub 386 n y C28 C23 X77 sing 387 n y C24 C23 X77 sing 388 n n C24 C25 X77 sing 389 n n C29 C20 X77 sing 390 n y C23 C22 X77 doub 391 n y C20 N03 X77 sing 392 n n C20 C21 X77 doub 393 n y C22 C21 X77 sing 394 n y N03 C04 X77 sing 395 n n C19 N18 X77 doub 396 n y C19 C14 X77 sing 397 n y C04 C14 X77 sing 398 n n C04 C05 X77 sing 399 n n N18 C17 X77 sing 400 n y C14 C15 X77 doub 401 n y O13 C05 X77 doub 402 n n C17 C16 X77 doub 403 n y C05 N06 X77 sing 404 n n C15 C16 X77 sing 405 n y N06 C07 X77 sing 406 n n C12 C07 X77 sing 407 n n C12 C11 X77 sing 408 n n C07 C08 X77 sing 409 n n C11 C10 X77 sing 410 n n C08 C09 X77 sing 411 n n C10 C09 X77 sing 412 n n C04 H041 X77 sing 413 n n C07 H071 X77 sing 414 n n C08 H081 X77 sing 415 n n C08 H082 X77 sing 416 n n C09 H091 X77 sing 417 n n C09 H092 X77 sing 418 n n C10 H101 X77 sing 419 n n C10 H102 X77 sing 420 n n C11 H112 X77 sing 421 n n C11 H111 X77 sing 422 n n C12 H121 X77 sing 423 n n C12 H122 X77 sing 424 n n C15 H151 X77 sing 425 n n C16 H161 X77 sing 426 n n C17 H171 X77 sing 427 n n C19 H191 X77 sing 428 n n C21 H211 X77 sing 429 n n C22 H221 X77 sing 430 n n C25 H251 X77 sing 431 n n C25 H252 X77 sing 432 n n C25 H253 X77 sing 433 n n C26 H261 X77 sing 434 n n C26 H263 X77 sing 435 n n C26 H262 X77 sing 436 n n C27 H272 X77 sing 437 n n C27 H273 X77 sing 438 n n C27 H271 X77 sing 439 n n C28 H281 X77 sing 440 n n C29 H291 X77 sing 441 n n C31 H311 X77 sing 442 n n C33 H331 X77 sing 443 n n N06 H061 X77 sing 444 n n N32 H1 X77 sing 445 n n # _atom_sites.entry_id 8YKN _atom_sites.fract_transf_matrix[1][1] 0.008759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001682 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X77 A 1 401 1 X77 LIG . C 3 HOH A 1 501 48 HOH HOH . C 3 HOH A 2 502 126 HOH HOH . C 3 HOH A 3 503 76 HOH HOH . C 3 HOH A 4 504 75 HOH HOH . C 3 HOH A 5 505 32 HOH HOH . C 3 HOH A 6 506 70 HOH HOH . C 3 HOH A 7 507 38 HOH HOH . C 3 HOH A 8 508 73 HOH HOH . C 3 HOH A 9 509 12 HOH HOH . C 3 HOH A 10 510 29 HOH HOH . C 3 HOH A 11 511 60 HOH HOH . C 3 HOH A 12 512 108 HOH HOH . C 3 HOH A 13 513 91 HOH HOH . C 3 HOH A 14 514 62 HOH HOH . C 3 HOH A 15 515 57 HOH HOH . C 3 HOH A 16 516 90 HOH HOH . C 3 HOH A 17 517 14 HOH HOH . C 3 HOH A 18 518 31 HOH HOH . C 3 HOH A 19 519 4 HOH HOH . C 3 HOH A 20 520 23 HOH HOH . C 3 HOH A 21 521 16 HOH HOH . C 3 HOH A 22 522 15 HOH HOH . C 3 HOH A 23 523 45 HOH HOH . C 3 HOH A 24 524 72 HOH HOH . C 3 HOH A 25 525 101 HOH HOH . C 3 HOH A 26 526 7 HOH HOH . C 3 HOH A 27 527 114 HOH HOH . C 3 HOH A 28 528 3 HOH HOH . C 3 HOH A 29 529 6 HOH HOH . C 3 HOH A 30 530 30 HOH HOH . C 3 HOH A 31 531 109 HOH HOH . C 3 HOH A 32 532 54 HOH HOH . C 3 HOH A 33 533 115 HOH HOH . C 3 HOH A 34 534 47 HOH HOH . C 3 HOH A 35 535 24 HOH HOH . C 3 HOH A 36 536 81 HOH HOH . C 3 HOH A 37 537 119 HOH HOH . C 3 HOH A 38 538 84 HOH HOH . C 3 HOH A 39 539 71 HOH HOH . C 3 HOH A 40 540 19 HOH HOH . C 3 HOH A 41 541 55 HOH HOH . C 3 HOH A 42 542 110 HOH HOH . C 3 HOH A 43 543 11 HOH HOH . C 3 HOH A 44 544 13 HOH HOH . C 3 HOH A 45 545 39 HOH HOH . C 3 HOH A 46 546 2 HOH HOH . C 3 HOH A 47 547 89 HOH HOH . C 3 HOH A 48 548 63 HOH HOH . C 3 HOH A 49 549 1 HOH HOH . C 3 HOH A 50 550 116 HOH HOH . C 3 HOH A 51 551 34 HOH HOH . C 3 HOH A 52 552 68 HOH HOH . C 3 HOH A 53 553 5 HOH HOH . C 3 HOH A 54 554 22 HOH HOH . C 3 HOH A 55 555 113 HOH HOH . C 3 HOH A 56 556 33 HOH HOH . C 3 HOH A 57 557 122 HOH HOH . C 3 HOH A 58 558 98 HOH HOH . C 3 HOH A 59 559 102 HOH HOH . C 3 HOH A 60 560 112 HOH HOH . C 3 HOH A 61 561 61 HOH HOH . C 3 HOH A 62 562 42 HOH HOH . C 3 HOH A 63 563 100 HOH HOH . C 3 HOH A 64 564 86 HOH HOH . C 3 HOH A 65 565 25 HOH HOH . C 3 HOH A 66 566 52 HOH HOH . C 3 HOH A 67 567 37 HOH HOH . C 3 HOH A 68 568 20 HOH HOH . C 3 HOH A 69 569 17 HOH HOH . C 3 HOH A 70 570 8 HOH HOH . C 3 HOH A 71 571 28 HOH HOH . C 3 HOH A 72 572 58 HOH HOH . C 3 HOH A 73 573 50 HOH HOH . C 3 HOH A 74 574 40 HOH HOH . C 3 HOH A 75 575 27 HOH HOH . C 3 HOH A 76 576 51 HOH HOH . C 3 HOH A 77 577 18 HOH HOH . C 3 HOH A 78 578 64 HOH HOH . C 3 HOH A 79 579 125 HOH HOH . C 3 HOH A 80 580 69 HOH HOH . C 3 HOH A 81 581 36 HOH HOH . C 3 HOH A 82 582 83 HOH HOH . C 3 HOH A 83 583 78 HOH HOH . C 3 HOH A 84 584 118 HOH HOH . C 3 HOH A 85 585 74 HOH HOH . C 3 HOH A 86 586 44 HOH HOH . C 3 HOH A 87 587 107 HOH HOH . C 3 HOH A 88 588 56 HOH HOH . C 3 HOH A 89 589 67 HOH HOH . C 3 HOH A 90 590 9 HOH HOH . C 3 HOH A 91 591 96 HOH HOH . C 3 HOH A 92 592 21 HOH HOH . C 3 HOH A 93 593 46 HOH HOH . C 3 HOH A 94 594 53 HOH HOH . C 3 HOH A 95 595 82 HOH HOH . C 3 HOH A 96 596 10 HOH HOH . C 3 HOH A 97 597 94 HOH HOH . C 3 HOH A 98 598 105 HOH HOH . C 3 HOH A 99 599 49 HOH HOH . C 3 HOH A 100 600 35 HOH HOH . C 3 HOH A 101 601 65 HOH HOH . C 3 HOH A 102 602 59 HOH HOH . C 3 HOH A 103 603 106 HOH HOH . C 3 HOH A 104 604 97 HOH HOH . C 3 HOH A 105 605 41 HOH HOH . C 3 HOH A 106 606 92 HOH HOH . C 3 HOH A 107 607 79 HOH HOH . C 3 HOH A 108 608 77 HOH HOH . C 3 HOH A 109 609 103 HOH HOH . C 3 HOH A 110 610 124 HOH HOH . C 3 HOH A 111 611 99 HOH HOH . C 3 HOH A 112 612 87 HOH HOH . C 3 HOH A 113 613 117 HOH HOH . C 3 HOH A 114 614 104 HOH HOH . C 3 HOH A 115 615 88 HOH HOH . C 3 HOH A 116 616 43 HOH HOH . C 3 HOH A 117 617 80 HOH HOH . C 3 HOH A 118 618 66 HOH HOH . C 3 HOH A 119 619 85 HOH HOH . C 3 HOH A 120 620 120 HOH HOH . C 3 HOH A 121 621 111 HOH HOH . C 3 HOH A 122 622 95 HOH HOH . C 3 HOH A 123 623 123 HOH HOH . C 3 HOH A 124 624 26 HOH HOH . C 3 HOH A 125 625 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 X77 . . . B 2 6.839 -2.645 21.517 1 26.04 ? C02 X77 401 A 1 HETATM 2 C C04 X77 . . . B 2 7.407 -0.192 21.244 1 24.22 ? C04 X77 401 A 1 HETATM 3 C C05 X77 . . . B 2 8.56 0.75 21.494 1 25.69 ? C05 X77 401 A 1 HETATM 4 C C07 X77 . . . B 2 9.299 2.463 23.371 1 33.65 ? C07 X77 401 A 1 HETATM 5 C C08 X77 . . . B 2 10.623 1.816 23.762 1 33.21 ? C08 X77 401 A 1 HETATM 6 C C09 X77 . . . B 2 11.607 2.874 24.258 1 27.53 ? C09 X77 401 A 1 HETATM 7 C C10 X77 . . . B 2 10.95 4.235 24.51 1 34.2 ? C10 X77 401 A 1 HETATM 8 C C11 X77 . . . B 2 10.255 4.764 23.252 1 31.1 ? C11 X77 401 A 1 HETATM 9 C C12 X77 . . . B 2 9.476 3.689 22.498 1 32.92 ? C12 X77 401 A 1 HETATM 10 C C14 X77 . . . B 2 6.936 0.063 19.828 1 22.9 ? C14 X77 401 A 1 HETATM 11 C C15 X77 . . . B 2 5.814 1.042 19.674 1 23.79 ? C15 X77 401 A 1 HETATM 12 C C16 X77 . . . B 2 5.304 1.376 18.314 1 25.87 ? C16 X77 401 A 1 HETATM 13 C C17 X77 . . . B 2 5.991 0.69 17.142 1 24.27 ? C17 X77 401 A 1 HETATM 14 C C19 X77 . . . B 2 7.618 -0.626 18.663 1 22.36 ? C19 X77 401 A 1 HETATM 15 C C20 X77 . . . B 2 9.131 -1.728 22.201 1 25.97 ? C20 X77 401 A 1 HETATM 16 C C21 X77 . . . B 2 9.206 -1.54 23.701 1 24.8 ? C21 X77 401 A 1 HETATM 17 C C22 X77 . . . B 2 10.556 -1.681 24.396 1 26.8 ? C22 X77 401 A 1 HETATM 18 C C23 X77 . . . B 2 11.793 -2.019 23.551 1 22.34 ? C23 X77 401 A 1 HETATM 19 C C24 X77 . . . B 2 13.116 -2.172 24.296 1 25.57 ? C24 X77 401 A 1 HETATM 20 C C25 X77 . . . B 2 13.297 -0.899 25.112 1 27.47 ? C25 X77 401 A 1 HETATM 21 C C26 X77 . . . B 2 14.214 -2.385 23.279 1 23.88 ? C26 X77 401 A 1 HETATM 22 C C27 X77 . . . B 2 13.008 -3.394 25.234 1 26.4 ? C27 X77 401 A 1 HETATM 23 C C28 X77 . . . B 2 11.724 -2.206 22.044 1 22.88 ? C28 X77 401 A 1 HETATM 24 C C29 X77 . . . B 2 10.368 -2.066 21.353 1 24.41 ? C29 X77 401 A 1 HETATM 25 C C30 X77 . . . B 2 7.167 -4.079 21.966 1 23.22 ? C30 X77 401 A 1 HETATM 26 C C31 X77 . . . B 2 6.282 -5.117 21.874 1 25.33 ? C31 X77 401 A 1 HETATM 27 C C33 X77 . . . B 2 8.088 -5.848 22.786 1 20.63 ? C33 X77 401 A 1 HETATM 28 N N03 X77 . . . B 2 7.798 -1.543 21.608 1 21.19 ? N03 X77 401 A 1 HETATM 29 N N06 X77 . . . B 2 8.403 1.475 22.756 1 25.99 ? N06 X77 401 A 1 HETATM 30 N N18 X77 . . . B 2 7.1 -0.284 17.325 1 21.47 ? N18 X77 401 A 1 HETATM 31 N N32 X77 . . . B 2 6.859 -6.186 22.367 1 27.87 ? N32 X77 401 A 1 HETATM 32 N N34 X77 . . . B 2 8.267 -4.536 22.535 1 27.49 ? N34 X77 401 A 1 HETATM 33 O O01 X77 . . . B 2 5.777 -2.389 21.074 1 26 ? O01 X77 401 A 1 HETATM 34 O O13 X77 . . . B 2 9.474 0.878 20.734 1 24.18 ? O13 X77 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #