data_8YKO
#
_model_server_result.job_id            f-qIlhI8wUZ3HIyqYWMlyg 
_model_server_result.datetime_utc      '2025-03-02 08:42:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8YKO 
#
_exptl.entry_id    8YKO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              459.583 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YKO 
_cell.length_a            68.21 
_cell.length_b            101.487 
_cell.length_c            104.585 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H33 N5 O2' 
_chem_comp.formula_weight    459.583 
_chem_comp.id                X77 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C33 N32 X77 sing 376 n y 
C33 N34 X77 doub 377 n y 
N32 C31 X77 sing 378 n y 
N34 C30 X77 sing 379 n y 
C31 C30 X77 doub 380 n y 
C30 C02 X77 sing 381 n n 
C27 C24 X77 sing 382 n n 
C02 O01 X77 doub 383 n n 
C02 N03 X77 sing 384 n n 
C26 C24 X77 sing 385 n n 
C28 C29 X77 doub 386 n y 
C28 C23 X77 sing 387 n y 
C24 C23 X77 sing 388 n n 
C24 C25 X77 sing 389 n n 
C29 C20 X77 sing 390 n y 
C23 C22 X77 doub 391 n y 
C20 N03 X77 sing 392 n n 
C20 C21 X77 doub 393 n y 
C22 C21 X77 sing 394 n y 
N03 C04 X77 sing 395 n n 
C19 N18 X77 doub 396 n y 
C19 C14 X77 sing 397 n y 
C04 C14 X77 sing 398 n n 
C04 C05 X77 sing 399 n n 
N18 C17 X77 sing 400 n y 
C14 C15 X77 doub 401 n y 
O13 C05 X77 doub 402 n n 
C17 C16 X77 doub 403 n y 
C05 N06 X77 sing 404 n n 
C15 C16 X77 sing 405 n y 
N06 C07 X77 sing 406 n n 
C12 C07 X77 sing 407 n n 
C12 C11 X77 sing 408 n n 
C07 C08 X77 sing 409 n n 
C11 C10 X77 sing 410 n n 
C08 C09 X77 sing 411 n n 
C10 C09 X77 sing 412 n n 
C04 H041 X77 sing 413 n n 
C07 H071 X77 sing 414 n n 
C08 H081 X77 sing 415 n n 
C08 H082 X77 sing 416 n n 
C09 H091 X77 sing 417 n n 
C09 H092 X77 sing 418 n n 
C10 H101 X77 sing 419 n n 
C10 H102 X77 sing 420 n n 
C11 H112 X77 sing 421 n n 
C11 H111 X77 sing 422 n n 
C12 H121 X77 sing 423 n n 
C12 H122 X77 sing 424 n n 
C15 H151 X77 sing 425 n n 
C16 H161 X77 sing 426 n n 
C17 H171 X77 sing 427 n n 
C19 H191 X77 sing 428 n n 
C21 H211 X77 sing 429 n n 
C22 H221 X77 sing 430 n n 
C25 H251 X77 sing 431 n n 
C25 H252 X77 sing 432 n n 
C25 H253 X77 sing 433 n n 
C26 H261 X77 sing 434 n n 
C26 H263 X77 sing 435 n n 
C26 H262 X77 sing 436 n n 
C27 H272 X77 sing 437 n n 
C27 H273 X77 sing 438 n n 
C27 H271 X77 sing 439 n n 
C28 H281 X77 sing 440 n n 
C29 H291 X77 sing 441 n n 
C31 H311 X77 sing 442 n n 
C33 H331 X77 sing 443 n n 
N06 H061 X77 sing 444 n n 
N32 H1 X77 sing 445 n n 
#
_atom_sites.entry_id                     8YKO 
_atom_sites.fract_transf_matrix[1][1]    0.014661 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009853 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009562 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 X77 A 1 401 1 X77 LIG . 
D 2 X77 B 1 401 2 X77 LIG . 
E 3 HOH A 1 501 137 HOH HOH . 
E 3 HOH A 2 502 44 HOH HOH . 
E 3 HOH A 3 503 7 HOH HOH . 
E 3 HOH A 4 504 105 HOH HOH . 
E 3 HOH A 5 505 154 HOH HOH . 
E 3 HOH A 6 506 156 HOH HOH . 
E 3 HOH A 7 507 71 HOH HOH . 
E 3 HOH A 8 508 97 HOH HOH . 
E 3 HOH A 9 509 78 HOH HOH . 
E 3 HOH A 10 510 75 HOH HOH . 
E 3 HOH A 11 511 11 HOH HOH . 
E 3 HOH A 12 512 83 HOH HOH . 
E 3 HOH A 13 513 145 HOH HOH . 
E 3 HOH A 14 514 1 HOH HOH . 
E 3 HOH A 15 515 98 HOH HOH . 
E 3 HOH A 16 516 50 HOH HOH . 
E 3 HOH A 17 517 149 HOH HOH . 
E 3 HOH A 18 518 136 HOH HOH . 
E 3 HOH A 19 519 25 HOH HOH . 
E 3 HOH A 20 520 89 HOH HOH . 
E 3 HOH A 21 521 122 HOH HOH . 
E 3 HOH A 22 522 21 HOH HOH . 
E 3 HOH A 23 523 109 HOH HOH . 
E 3 HOH A 24 524 165 HOH HOH . 
E 3 HOH A 25 525 77 HOH HOH . 
E 3 HOH A 26 526 40 HOH HOH . 
E 3 HOH A 27 527 58 HOH HOH . 
E 3 HOH A 28 528 18 HOH HOH . 
E 3 HOH A 29 529 10 HOH HOH . 
E 3 HOH A 30 530 88 HOH HOH . 
E 3 HOH A 31 531 153 HOH HOH . 
E 3 HOH A 32 532 116 HOH HOH . 
E 3 HOH A 33 533 111 HOH HOH . 
E 3 HOH A 34 534 120 HOH HOH . 
E 3 HOH A 35 535 163 HOH HOH . 
E 3 HOH A 36 536 92 HOH HOH . 
E 3 HOH A 37 537 118 HOH HOH . 
E 3 HOH A 38 538 100 HOH HOH . 
E 3 HOH A 39 539 84 HOH HOH . 
E 3 HOH A 40 540 69 HOH HOH . 
E 3 HOH A 41 541 6 HOH HOH . 
E 3 HOH A 42 542 143 HOH HOH . 
E 3 HOH A 43 543 61 HOH HOH . 
E 3 HOH A 44 544 101 HOH HOH . 
E 3 HOH A 45 545 27 HOH HOH . 
E 3 HOH A 46 546 72 HOH HOH . 
E 3 HOH A 47 547 9 HOH HOH . 
E 3 HOH A 48 548 95 HOH HOH . 
E 3 HOH A 49 549 12 HOH HOH . 
E 3 HOH A 50 550 29 HOH HOH . 
E 3 HOH A 51 551 138 HOH HOH . 
E 3 HOH A 52 552 14 HOH HOH . 
E 3 HOH A 53 553 63 HOH HOH . 
E 3 HOH A 54 554 125 HOH HOH . 
E 3 HOH A 55 555 24 HOH HOH . 
E 3 HOH A 56 556 67 HOH HOH . 
E 3 HOH A 57 557 5 HOH HOH . 
E 3 HOH A 58 558 47 HOH HOH . 
E 3 HOH A 59 559 130 HOH HOH . 
E 3 HOH A 60 560 162 HOH HOH . 
E 3 HOH A 61 561 53 HOH HOH . 
E 3 HOH A 62 562 35 HOH HOH . 
E 3 HOH A 63 563 123 HOH HOH . 
E 3 HOH A 64 564 158 HOH HOH . 
E 3 HOH A 65 565 52 HOH HOH . 
E 3 HOH A 66 566 13 HOH HOH . 
E 3 HOH A 67 567 127 HOH HOH . 
E 3 HOH A 68 568 59 HOH HOH . 
E 3 HOH A 69 569 132 HOH HOH . 
E 3 HOH A 70 570 4 HOH HOH . 
E 3 HOH A 71 571 15 HOH HOH . 
E 3 HOH A 72 572 19 HOH HOH . 
E 3 HOH A 73 573 57 HOH HOH . 
E 3 HOH A 74 574 17 HOH HOH . 
E 3 HOH A 75 575 76 HOH HOH . 
E 3 HOH A 76 576 86 HOH HOH . 
E 3 HOH A 77 577 20 HOH HOH . 
E 3 HOH A 78 578 73 HOH HOH . 
E 3 HOH A 79 579 139 HOH HOH . 
E 3 HOH A 80 580 51 HOH HOH . 
E 3 HOH A 81 581 68 HOH HOH . 
E 3 HOH A 82 582 112 HOH HOH . 
E 3 HOH A 83 583 37 HOH HOH . 
E 3 HOH A 84 584 168 HOH HOH . 
E 3 HOH A 85 585 164 HOH HOH . 
E 3 HOH A 86 586 36 HOH HOH . 
E 3 HOH A 87 587 46 HOH HOH . 
E 3 HOH A 88 588 141 HOH HOH . 
E 3 HOH A 89 589 171 HOH HOH . 
E 3 HOH A 90 590 166 HOH HOH . 
E 3 HOH A 91 591 102 HOH HOH . 
E 3 HOH A 92 592 151 HOH HOH . 
E 3 HOH A 93 593 169 HOH HOH . 
E 3 HOH A 94 594 131 HOH HOH . 
E 3 HOH A 95 595 146 HOH HOH . 
E 3 HOH A 96 596 170 HOH HOH . 
E 3 HOH A 97 597 22 HOH HOH . 
E 3 HOH A 98 598 99 HOH HOH . 
E 3 HOH A 99 599 160 HOH HOH . 
E 3 HOH A 100 600 128 HOH HOH . 
E 3 HOH A 101 601 167 HOH HOH . 
F 3 HOH B 1 501 150 HOH HOH . 
F 3 HOH B 2 502 80 HOH HOH . 
F 3 HOH B 3 503 30 HOH HOH . 
F 3 HOH B 4 504 119 HOH HOH . 
F 3 HOH B 5 505 56 HOH HOH . 
F 3 HOH B 6 506 32 HOH HOH . 
F 3 HOH B 7 507 49 HOH HOH . 
F 3 HOH B 8 508 45 HOH HOH . 
F 3 HOH B 9 509 54 HOH HOH . 
F 3 HOH B 10 510 64 HOH HOH . 
F 3 HOH B 11 511 91 HOH HOH . 
F 3 HOH B 12 512 3 HOH HOH . 
F 3 HOH B 13 513 55 HOH HOH . 
F 3 HOH B 14 514 93 HOH HOH . 
F 3 HOH B 15 515 31 HOH HOH . 
F 3 HOH B 16 516 26 HOH HOH . 
F 3 HOH B 17 517 121 HOH HOH . 
F 3 HOH B 18 518 114 HOH HOH . 
F 3 HOH B 19 519 42 HOH HOH . 
F 3 HOH B 20 520 74 HOH HOH . 
F 3 HOH B 21 521 106 HOH HOH . 
F 3 HOH B 22 522 147 HOH HOH . 
F 3 HOH B 23 523 81 HOH HOH . 
F 3 HOH B 24 524 62 HOH HOH . 
F 3 HOH B 25 525 140 HOH HOH . 
F 3 HOH B 26 526 2 HOH HOH . 
F 3 HOH B 27 527 134 HOH HOH . 
F 3 HOH B 28 528 113 HOH HOH . 
F 3 HOH B 29 529 107 HOH HOH . 
F 3 HOH B 30 530 41 HOH HOH . 
F 3 HOH B 31 531 38 HOH HOH . 
F 3 HOH B 32 532 103 HOH HOH . 
F 3 HOH B 33 533 148 HOH HOH . 
F 3 HOH B 34 534 157 HOH HOH . 
F 3 HOH B 35 535 82 HOH HOH . 
F 3 HOH B 36 536 87 HOH HOH . 
F 3 HOH B 37 537 108 HOH HOH . 
F 3 HOH B 38 538 117 HOH HOH . 
F 3 HOH B 39 539 28 HOH HOH . 
F 3 HOH B 40 540 135 HOH HOH . 
F 3 HOH B 41 541 23 HOH HOH . 
F 3 HOH B 42 542 155 HOH HOH . 
F 3 HOH B 43 543 79 HOH HOH . 
F 3 HOH B 44 544 66 HOH HOH . 
F 3 HOH B 45 545 96 HOH HOH . 
F 3 HOH B 46 546 8 HOH HOH . 
F 3 HOH B 47 547 48 HOH HOH . 
F 3 HOH B 48 548 90 HOH HOH . 
F 3 HOH B 49 549 43 HOH HOH . 
F 3 HOH B 50 550 60 HOH HOH . 
F 3 HOH B 51 551 152 HOH HOH . 
F 3 HOH B 52 552 70 HOH HOH . 
F 3 HOH B 53 553 39 HOH HOH . 
F 3 HOH B 54 554 94 HOH HOH . 
F 3 HOH B 55 555 16 HOH HOH . 
F 3 HOH B 56 556 85 HOH HOH . 
F 3 HOH B 57 557 34 HOH HOH . 
F 3 HOH B 58 558 110 HOH HOH . 
F 3 HOH B 59 559 126 HOH HOH . 
F 3 HOH B 60 560 144 HOH HOH . 
F 3 HOH B 61 561 65 HOH HOH . 
F 3 HOH B 62 562 33 HOH HOH . 
F 3 HOH B 63 563 142 HOH HOH . 
F 3 HOH B 64 564 104 HOH HOH . 
F 3 HOH B 65 565 124 HOH HOH . 
F 3 HOH B 66 566 159 HOH HOH . 
F 3 HOH B 67 567 133 HOH HOH . 
F 3 HOH B 68 568 115 HOH HOH . 
F 3 HOH B 69 569 161 HOH HOH . 
F 3 HOH B 70 570 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 X77 . . . D 2 14.097 13.932 -3.895 1 13.1 ? C02 X77 401 B 1 
HETATM 2 C C04 X77 . . . D 2 15.725 12.073 -4.897 1 13.73 ? C04 X77 401 B 1 
HETATM 3 C C05 X77 . . . D 2 16.47 10.822 -4.4 1 13.37 ? C05 X77 401 B 1 
HETATM 4 C C07 X77 . . . D 2 19.142 11.228 -4.219 1 23.82 ? C07 X77 401 B 1 
HETATM 5 C C08 X77 . . . D 2 19.523 11.236 -2.743 1 20.52 ? C08 X77 401 B 1 
HETATM 6 C C09 X77 . . . D 2 20.007 9.868 -2.265 1 22.22 ? C09 X77 401 B 1 
HETATM 7 C C10 X77 . . . D 2 21.361 9.573 -2.911 1 24.45 ? C10 X77 401 B 1 
HETATM 8 C C11 X77 . . . D 2 21.377 9.853 -4.419 1 21.86 ? C11 X77 401 B 1 
HETATM 9 C C12 X77 . . . D 2 20.08 10.366 -5.066 1 20.17 ? C12 X77 401 B 1 
HETATM 10 C C14 X77 . . . D 2 14.656 11.461 -5.812 1 14.87 ? C14 X77 401 B 1 
HETATM 11 C C15 X77 . . . D 2 13.41 10.84 -5.258 1 10.14 ? C15 X77 401 B 1 
HETATM 12 C C16 X77 . . . D 2 12.417 10.219 -6.178 1 10.96 ? C16 X77 401 B 1 
HETATM 13 C C17 X77 . . . D 2 12.658 10.209 -7.681 1 14.53 ? C17 X77 401 B 1 
HETATM 14 C C19 X77 . . . D 2 14.889 11.439 -7.309 1 15.05 ? C19 X77 401 B 1 
HETATM 15 C C20 X77 . . . D 2 15.722 12.582 -2.453 1 16.07 ? C20 X77 401 B 1 
HETATM 16 C C21 X77 . . . D 2 16.94 13.408 -2.062 1 12 ? C21 X77 401 B 1 
HETATM 17 C C22 X77 . . . D 2 17.607 13.198 -0.701 1 14.32 ? C22 X77 401 B 1 
HETATM 18 C C23 X77 . . . D 2 17.033 12.147 0.253 1 14.3 ? C23 X77 401 B 1 
HETATM 19 C C24 X77 . . . D 2 17.745 11.956 1.593 1 14.26 ? C24 X77 401 B 1 
HETATM 20 C C25 X77 . . . D 2 19.252 11.871 1.299 1 15.53 ? C25 X77 401 B 1 
HETATM 21 C C26 X77 . . . D 2 17.24 10.677 2.22 1 9.24 ? C26 X77 401 B 1 
HETATM 22 C C27 X77 . . . D 2 17.43 13.161 2.516 1 16.61 ? C27 X77 401 B 1 
HETATM 23 C C28 X77 . . . D 2 15.815 11.307 -0.132 1 11.53 ? C28 X77 401 B 1 
HETATM 24 C C29 X77 . . . D 2 15.133 11.523 -1.501 1 11.13 ? C29 X77 401 B 1 
HETATM 25 C C30 X77 . . . D 2 13.584 14.742 -2.671 1 16.07 ? C30 X77 401 B 1 
HETATM 26 C C31 X77 . . . D 2 13.948 14.638 -1.346 1 9.89 ? C31 X77 401 B 1 
HETATM 27 C C33 X77 . . . D 2 12.484 16.196 -1.499 1 15.24 ? C33 X77 401 B 1 
HETATM 28 N N03 X77 . . . D 2 15.143 12.858 -3.779 1 14.18 ? N03 X77 401 B 1 
HETATM 29 N N06 X77 . . . D 2 17.888 10.507 -4.175 1 20.39 ? N06 X77 401 B 1 
HETATM 30 N N18 X77 . . . D 2 13.891 10.824 -8.23 1 11.54 ? N18 X77 401 B 1 
HETATM 31 N N32 X77 . . . D 2 13.274 15.518 -0.649 1 7.79 ? N32 X77 401 B 1 
HETATM 32 N N34 X77 . . . D 2 12.694 15.707 -2.741 1 16.08 ? N34 X77 401 B 1 
HETATM 33 O O01 X77 . . . D 2 13.621 14.217 -4.937 1 15.45 ? O01 X77 401 B 1 
HETATM 34 O O13 X77 . . . D 2 15.846 9.853 -4.178 1 13.96 ? O13 X77 401 B 1 
#
_model_server_stats.io_time_ms              964 
_model_server_stats.parse_time_ms           39 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           1141 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           34 
#