data_8YKP # _model_server_result.job_id jGHRV_0LrDYUDw-RHeUeSw _model_server_result.datetime_utc '2024-11-28 17:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ykp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8YKP # _exptl.entry_id 8YKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.583 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.082 _cell.angle_gamma 90 _cell.entry_id 8YKP _cell.length_a 114.286 _cell.length_b 54.253 _cell.length_c 45.702 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N5 O2' _chem_comp.formula_weight 459.583 _chem_comp.id X77 _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-1H-imidazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 N32 X77 sing 376 n y C33 N34 X77 doub 377 n y N32 C31 X77 sing 378 n y N34 C30 X77 sing 379 n y C31 C30 X77 doub 380 n y C30 C02 X77 sing 381 n n C27 C24 X77 sing 382 n n C02 O01 X77 doub 383 n n C02 N03 X77 sing 384 n n C26 C24 X77 sing 385 n n C28 C29 X77 doub 386 n y C28 C23 X77 sing 387 n y C24 C23 X77 sing 388 n n C24 C25 X77 sing 389 n n C29 C20 X77 sing 390 n y C23 C22 X77 doub 391 n y C20 N03 X77 sing 392 n n C20 C21 X77 doub 393 n y C22 C21 X77 sing 394 n y N03 C04 X77 sing 395 n n C19 N18 X77 doub 396 n y C19 C14 X77 sing 397 n y C04 C14 X77 sing 398 n n C04 C05 X77 sing 399 n n N18 C17 X77 sing 400 n y C14 C15 X77 doub 401 n y O13 C05 X77 doub 402 n n C17 C16 X77 doub 403 n y C05 N06 X77 sing 404 n n C15 C16 X77 sing 405 n y N06 C07 X77 sing 406 n n C12 C07 X77 sing 407 n n C12 C11 X77 sing 408 n n C07 C08 X77 sing 409 n n C11 C10 X77 sing 410 n n C08 C09 X77 sing 411 n n C10 C09 X77 sing 412 n n C04 H041 X77 sing 413 n n C07 H071 X77 sing 414 n n C08 H081 X77 sing 415 n n C08 H082 X77 sing 416 n n C09 H091 X77 sing 417 n n C09 H092 X77 sing 418 n n C10 H101 X77 sing 419 n n C10 H102 X77 sing 420 n n C11 H112 X77 sing 421 n n C11 H111 X77 sing 422 n n C12 H121 X77 sing 423 n n C12 H122 X77 sing 424 n n C15 H151 X77 sing 425 n n C16 H161 X77 sing 426 n n C17 H171 X77 sing 427 n n C19 H191 X77 sing 428 n n C21 H211 X77 sing 429 n n C22 H221 X77 sing 430 n n C25 H251 X77 sing 431 n n C25 H252 X77 sing 432 n n C25 H253 X77 sing 433 n n C26 H261 X77 sing 434 n n C26 H263 X77 sing 435 n n C26 H262 X77 sing 436 n n C27 H272 X77 sing 437 n n C27 H273 X77 sing 438 n n C27 H271 X77 sing 439 n n C28 H281 X77 sing 440 n n C29 H291 X77 sing 441 n n C31 H311 X77 sing 442 n n C33 H331 X77 sing 443 n n N06 H061 X77 sing 444 n n N32 H1 X77 sing 445 n n # _atom_sites.entry_id 8YKP _atom_sites.fract_transf_matrix[1][1] 0.00875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001714 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018432 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X77 A 1 401 1 X77 LIG . C 3 HOH A 1 501 6 HOH HOH . C 3 HOH A 2 502 13 HOH HOH . C 3 HOH A 3 503 9 HOH HOH . C 3 HOH A 4 504 12 HOH HOH . C 3 HOH A 5 505 11 HOH HOH . C 3 HOH A 6 506 3 HOH HOH . C 3 HOH A 7 507 14 HOH HOH . C 3 HOH A 8 508 7 HOH HOH . C 3 HOH A 9 509 18 HOH HOH . C 3 HOH A 10 510 21 HOH HOH . C 3 HOH A 11 511 15 HOH HOH . C 3 HOH A 12 512 4 HOH HOH . C 3 HOH A 13 513 10 HOH HOH . C 3 HOH A 14 514 20 HOH HOH . C 3 HOH A 15 515 16 HOH HOH . C 3 HOH A 16 516 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 X77 . . . B 2 6.8 -2.459 21.679 1 49.47 ? C02 X77 401 A 1 HETATM 2 C C04 X77 . . . B 2 7.411 0.03 21.397 1 44.21 ? C04 X77 401 A 1 HETATM 3 C C05 X77 . . . B 2 8.595 0.952 21.525 1 44.87 ? C05 X77 401 A 1 HETATM 4 C C07 X77 . . . B 2 9.696 2.827 22.748 1 49.04 ? C07 X77 401 A 1 HETATM 5 C C08 X77 . . . B 2 9.032 4.192 22.897 1 48.11 ? C08 X77 401 A 1 HETATM 6 C C09 X77 . . . B 2 9.799 5.183 23.757 1 49.61 ? C09 X77 401 A 1 HETATM 7 C C10 X77 . . . B 2 11.229 4.724 23.992 1 48.76 ? C10 X77 401 A 1 HETATM 8 C C11 X77 . . . B 2 11.211 3.398 24.737 1 51.36 ? C11 X77 401 A 1 HETATM 9 C C12 X77 . . . B 2 10.506 2.307 23.939 1 51.17 ? C12 X77 401 A 1 HETATM 10 C C14 X77 . . . B 2 6.87 0.292 19.994 1 50.38 ? C14 X77 401 A 1 HETATM 11 C C15 X77 . . . B 2 5.75 1.277 19.868 1 45 ? C15 X77 401 A 1 HETATM 12 C C16 X77 . . . B 2 5.184 1.581 18.526 1 48.07 ? C16 X77 401 A 1 HETATM 13 C C17 X77 . . . B 2 5.781 0.896 17.302 1 48.08 ? C17 X77 401 A 1 HETATM 14 C C19 X77 . . . B 2 7.47 -0.392 18.774 1 44.14 ? C19 X77 401 A 1 HETATM 15 C C20 X77 . . . B 2 9.089 -1.529 22.373 1 50.66 ? C20 X77 401 A 1 HETATM 16 C C21 X77 . . . B 2 9.244 -1.214 23.849 1 47.66 ? C21 X77 401 A 1 HETATM 17 C C22 X77 . . . B 2 10.612 -1.37 24.5 1 46.59 ? C22 X77 401 A 1 HETATM 18 C C23 X77 . . . B 2 11.796 -1.842 23.666 1 42.5 ? C23 X77 401 A 1 HETATM 19 C C24 X77 . . . B 2 13.125 -1.974 24.401 1 44.54 ? C24 X77 401 A 1 HETATM 20 C C25 X77 . . . B 2 13.02 -3.06 25.456 1 50.24 ? C25 X77 401 A 1 HETATM 21 C C26 X77 . . . B 2 13.342 -0.643 25.064 1 45.2 ? C26 X77 401 A 1 HETATM 22 C C27 X77 . . . B 2 14.259 -2.318 23.413 1 47.82 ? C27 X77 401 A 1 HETATM 23 C C28 X77 . . . B 2 11.656 -2.155 22.191 1 47.25 ? C28 X77 401 A 1 HETATM 24 C C29 X77 . . . B 2 10.279 -1.995 21.522 1 46.82 ? C29 X77 401 A 1 HETATM 25 C C30 X77 . . . B 2 7.099 -3.902 22.122 1 44.76 ? C30 X77 401 A 1 HETATM 26 C C31 X77 . . . B 2 6.255 -4.97 21.943 1 49.55 ? C31 X77 401 A 1 HETATM 27 C C33 X77 . . . B 2 8.029 -5.661 22.965 1 45.55 ? C33 X77 401 A 1 HETATM 28 N N03 X77 . . . B 2 7.764 -1.343 21.781 1 44.56 ? N03 X77 401 A 1 HETATM 29 N N06 X77 . . . B 2 8.577 1.911 22.612 1 46.78 ? N06 X77 401 A 1 HETATM 30 N N18 X77 . . . B 2 6.908 -0.061 17.451 1 43.62 ? N18 X77 401 A 1 HETATM 31 N N32 X77 . . . B 2 6.839 -6.039 22.454 1 53.9 ? N32 X77 401 A 1 HETATM 32 N N34 X77 . . . B 2 8.163 -4.334 22.748 1 44.42 ? N34 X77 401 A 1 HETATM 33 O O01 X77 . . . B 2 5.748 -2.237 21.209 1 52.1 ? O01 X77 401 A 1 HETATM 34 O O13 X77 . . . B 2 9.489 0.928 20.763 1 47.77 ? O13 X77 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #