data_8YL3 # _model_server_result.job_id P8G51jeT0YPD4A_RNoWG6Q _model_server_result.datetime_utc '2024-12-05 04:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yl3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8YL3 # _exptl.entry_id 8YL3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YL3 _cell.length_a 42.911 _cell.length_b 57.154 _cell.length_c 63.007 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YL3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 23 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc2 B O1B GDP . A GDP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc3 C MG MG . A MG 202 1_555 D O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc4 C MG MG . A MG 202 1_555 D O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 C MG MG . A MG 202 1_555 D O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8YL3 _atom_sites.fract_transf_matrix[1][1] 0.023304 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP A 1 201 201 GDP GDP . C 3 MG A 1 202 1 MG MG . D 4 HOH A 1 301 135 HOH HOH . D 4 HOH A 2 302 250 HOH HOH . D 4 HOH A 3 303 147 HOH HOH . D 4 HOH A 4 304 223 HOH HOH . D 4 HOH A 5 305 226 HOH HOH . D 4 HOH A 6 306 4 HOH HOH . D 4 HOH A 7 307 183 HOH HOH . D 4 HOH A 8 308 230 HOH HOH . D 4 HOH A 9 309 202 HOH HOH . D 4 HOH A 10 310 182 HOH HOH . D 4 HOH A 11 311 199 HOH HOH . D 4 HOH A 12 312 79 HOH HOH . D 4 HOH A 13 313 25 HOH HOH . D 4 HOH A 14 314 211 HOH HOH . D 4 HOH A 15 315 91 HOH HOH . D 4 HOH A 16 316 95 HOH HOH . D 4 HOH A 17 317 92 HOH HOH . D 4 HOH A 18 318 140 HOH HOH . D 4 HOH A 19 319 35 HOH HOH . D 4 HOH A 20 320 30 HOH HOH . D 4 HOH A 21 321 77 HOH HOH . D 4 HOH A 22 322 149 HOH HOH . D 4 HOH A 23 323 40 HOH HOH . D 4 HOH A 24 324 27 HOH HOH . D 4 HOH A 25 325 6 HOH HOH . D 4 HOH A 26 326 28 HOH HOH . D 4 HOH A 27 327 10 HOH HOH . D 4 HOH A 28 328 54 HOH HOH . D 4 HOH A 29 329 107 HOH HOH . D 4 HOH A 30 330 100 HOH HOH . D 4 HOH A 31 331 206 HOH HOH . D 4 HOH A 32 332 73 HOH HOH . D 4 HOH A 33 333 196 HOH HOH . D 4 HOH A 34 334 157 HOH HOH . D 4 HOH A 35 335 23 HOH HOH . D 4 HOH A 36 336 167 HOH HOH . D 4 HOH A 37 337 123 HOH HOH . D 4 HOH A 38 338 60 HOH HOH . D 4 HOH A 39 339 39 HOH HOH . D 4 HOH A 40 340 166 HOH HOH . D 4 HOH A 41 341 197 HOH HOH . D 4 HOH A 42 342 36 HOH HOH . D 4 HOH A 43 343 97 HOH HOH . D 4 HOH A 44 344 116 HOH HOH . D 4 HOH A 45 345 38 HOH HOH . D 4 HOH A 46 346 31 HOH HOH . D 4 HOH A 47 347 7 HOH HOH . D 4 HOH A 48 348 26 HOH HOH . D 4 HOH A 49 349 76 HOH HOH . D 4 HOH A 50 350 1 HOH HOH . D 4 HOH A 51 351 145 HOH HOH . D 4 HOH A 52 352 81 HOH HOH . D 4 HOH A 53 353 52 HOH HOH . D 4 HOH A 54 354 34 HOH HOH . D 4 HOH A 55 355 53 HOH HOH . D 4 HOH A 56 356 64 HOH HOH . D 4 HOH A 57 357 3 HOH HOH . D 4 HOH A 58 358 20 HOH HOH . D 4 HOH A 59 359 126 HOH HOH . D 4 HOH A 60 360 14 HOH HOH . D 4 HOH A 61 361 225 HOH HOH . D 4 HOH A 62 362 221 HOH HOH . D 4 HOH A 63 363 106 HOH HOH . D 4 HOH A 64 364 41 HOH HOH . D 4 HOH A 65 365 119 HOH HOH . D 4 HOH A 66 366 19 HOH HOH . D 4 HOH A 67 367 44 HOH HOH . D 4 HOH A 68 368 68 HOH HOH . D 4 HOH A 69 369 111 HOH HOH . D 4 HOH A 70 370 5 HOH HOH . D 4 HOH A 71 371 104 HOH HOH . D 4 HOH A 72 372 17 HOH HOH . D 4 HOH A 73 373 86 HOH HOH . D 4 HOH A 74 374 112 HOH HOH . D 4 HOH A 75 375 42 HOH HOH . D 4 HOH A 76 376 11 HOH HOH . D 4 HOH A 77 377 43 HOH HOH . D 4 HOH A 78 378 48 HOH HOH . D 4 HOH A 79 379 94 HOH HOH . D 4 HOH A 80 380 232 HOH HOH . D 4 HOH A 81 381 189 HOH HOH . D 4 HOH A 82 382 65 HOH HOH . D 4 HOH A 83 383 51 HOH HOH . D 4 HOH A 84 384 2 HOH HOH . D 4 HOH A 85 385 8 HOH HOH . D 4 HOH A 86 386 93 HOH HOH . D 4 HOH A 87 387 110 HOH HOH . D 4 HOH A 88 388 229 HOH HOH . D 4 HOH A 89 389 101 HOH HOH . D 4 HOH A 90 390 139 HOH HOH . D 4 HOH A 91 391 228 HOH HOH . D 4 HOH A 92 392 98 HOH HOH . D 4 HOH A 93 393 45 HOH HOH . D 4 HOH A 94 394 161 HOH HOH . D 4 HOH A 95 395 89 HOH HOH . D 4 HOH A 96 396 209 HOH HOH . D 4 HOH A 97 397 171 HOH HOH . D 4 HOH A 98 398 24 HOH HOH . D 4 HOH A 99 399 150 HOH HOH . D 4 HOH A 100 400 168 HOH HOH . D 4 HOH A 101 401 88 HOH HOH . D 4 HOH A 102 402 90 HOH HOH . D 4 HOH A 103 403 72 HOH HOH . D 4 HOH A 104 404 13 HOH HOH . D 4 HOH A 105 405 204 HOH HOH . D 4 HOH A 106 406 103 HOH HOH . D 4 HOH A 107 407 237 HOH HOH . D 4 HOH A 108 408 15 HOH HOH . D 4 HOH A 109 409 70 HOH HOH . D 4 HOH A 110 410 124 HOH HOH . D 4 HOH A 111 411 78 HOH HOH . D 4 HOH A 112 412 179 HOH HOH . D 4 HOH A 113 413 148 HOH HOH . D 4 HOH A 114 414 108 HOH HOH . D 4 HOH A 115 415 203 HOH HOH . D 4 HOH A 116 416 191 HOH HOH . D 4 HOH A 117 417 136 HOH HOH . D 4 HOH A 118 418 61 HOH HOH . D 4 HOH A 119 419 180 HOH HOH . D 4 HOH A 120 420 56 HOH HOH . D 4 HOH A 121 421 21 HOH HOH . D 4 HOH A 122 422 47 HOH HOH . D 4 HOH A 123 423 117 HOH HOH . D 4 HOH A 124 424 66 HOH HOH . D 4 HOH A 125 425 59 HOH HOH . D 4 HOH A 126 426 57 HOH HOH . D 4 HOH A 127 427 46 HOH HOH . D 4 HOH A 128 428 9 HOH HOH . D 4 HOH A 129 429 115 HOH HOH . D 4 HOH A 130 430 151 HOH HOH . D 4 HOH A 131 431 82 HOH HOH . D 4 HOH A 132 432 96 HOH HOH . D 4 HOH A 133 433 227 HOH HOH . D 4 HOH A 134 434 224 HOH HOH . D 4 HOH A 135 435 33 HOH HOH . D 4 HOH A 136 436 102 HOH HOH . D 4 HOH A 137 437 87 HOH HOH . D 4 HOH A 138 438 16 HOH HOH . D 4 HOH A 139 439 122 HOH HOH . D 4 HOH A 140 440 134 HOH HOH . D 4 HOH A 141 441 188 HOH HOH . D 4 HOH A 142 442 37 HOH HOH . D 4 HOH A 143 443 55 HOH HOH . D 4 HOH A 144 444 208 HOH HOH . D 4 HOH A 145 445 249 HOH HOH . D 4 HOH A 146 446 186 HOH HOH . D 4 HOH A 147 447 29 HOH HOH . D 4 HOH A 148 448 12 HOH HOH . D 4 HOH A 149 449 165 HOH HOH . D 4 HOH A 150 450 181 HOH HOH . D 4 HOH A 151 451 212 HOH HOH . D 4 HOH A 152 452 71 HOH HOH . D 4 HOH A 153 453 172 HOH HOH . D 4 HOH A 154 454 58 HOH HOH . D 4 HOH A 155 455 146 HOH HOH . D 4 HOH A 156 456 184 HOH HOH . D 4 HOH A 157 457 128 HOH HOH . D 4 HOH A 158 458 18 HOH HOH . D 4 HOH A 159 459 63 HOH HOH . D 4 HOH A 160 460 198 HOH HOH . D 4 HOH A 161 461 80 HOH HOH . D 4 HOH A 162 462 143 HOH HOH . D 4 HOH A 163 463 50 HOH HOH . D 4 HOH A 164 464 75 HOH HOH . D 4 HOH A 165 465 49 HOH HOH . D 4 HOH A 166 466 121 HOH HOH . D 4 HOH A 167 467 22 HOH HOH . D 4 HOH A 168 468 170 HOH HOH . D 4 HOH A 169 469 160 HOH HOH . D 4 HOH A 170 470 67 HOH HOH . D 4 HOH A 171 471 241 HOH HOH . D 4 HOH A 172 472 138 HOH HOH . D 4 HOH A 173 473 187 HOH HOH . D 4 HOH A 174 474 243 HOH HOH . D 4 HOH A 175 475 141 HOH HOH . D 4 HOH A 176 476 127 HOH HOH . D 4 HOH A 177 477 164 HOH HOH . D 4 HOH A 178 478 120 HOH HOH . D 4 HOH A 179 479 153 HOH HOH . D 4 HOH A 180 480 185 HOH HOH . D 4 HOH A 181 481 62 HOH HOH . D 4 HOH A 182 482 32 HOH HOH . D 4 HOH A 183 483 177 HOH HOH . D 4 HOH A 184 484 137 HOH HOH . D 4 HOH A 185 485 142 HOH HOH . D 4 HOH A 186 486 85 HOH HOH . D 4 HOH A 187 487 113 HOH HOH . D 4 HOH A 188 488 118 HOH HOH . D 4 HOH A 189 489 133 HOH HOH . D 4 HOH A 190 490 236 HOH HOH . D 4 HOH A 191 491 114 HOH HOH . D 4 HOH A 192 492 156 HOH HOH . D 4 HOH A 193 493 155 HOH HOH . D 4 HOH A 194 494 154 HOH HOH . D 4 HOH A 195 495 218 HOH HOH . D 4 HOH A 196 496 238 HOH HOH . D 4 HOH A 197 497 176 HOH HOH . D 4 HOH A 198 498 152 HOH HOH . D 4 HOH A 199 499 246 HOH HOH . D 4 HOH A 200 500 162 HOH HOH . D 4 HOH A 201 501 159 HOH HOH . D 4 HOH A 202 502 99 HOH HOH . D 4 HOH A 203 503 125 HOH HOH . D 4 HOH A 204 504 169 HOH HOH . D 4 HOH A 205 505 131 HOH HOH . D 4 HOH A 206 506 144 HOH HOH . D 4 HOH A 207 507 84 HOH HOH . D 4 HOH A 208 508 130 HOH HOH . D 4 HOH A 209 509 109 HOH HOH . D 4 HOH A 210 510 244 HOH HOH . D 4 HOH A 211 511 194 HOH HOH . D 4 HOH A 212 512 200 HOH HOH . D 4 HOH A 213 513 192 HOH HOH . D 4 HOH A 214 514 69 HOH HOH . D 4 HOH A 215 515 231 HOH HOH . D 4 HOH A 216 516 207 HOH HOH . D 4 HOH A 217 517 105 HOH HOH . D 4 HOH A 218 518 83 HOH HOH . D 4 HOH A 219 519 178 HOH HOH . D 4 HOH A 220 520 129 HOH HOH . D 4 HOH A 221 521 132 HOH HOH . D 4 HOH A 222 522 163 HOH HOH . D 4 HOH A 223 523 174 HOH HOH . D 4 HOH A 224 524 219 HOH HOH . D 4 HOH A 225 525 217 HOH HOH . D 4 HOH A 226 526 193 HOH HOH . D 4 HOH A 227 527 158 HOH HOH . D 4 HOH A 228 528 173 HOH HOH . D 4 HOH A 229 529 215 HOH HOH . D 4 HOH A 230 530 205 HOH HOH . D 4 HOH A 231 531 74 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 16.777 _atom_site.Cartn_y -9.883 _atom_site.Cartn_z -11.671 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #