data_8YLC # _model_server_result.job_id JWSOXtZz5cgq9nFQePFCdw _model_server_result.datetime_utc '2024-10-10 12:22:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ylc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 8YLC # _exptl.entry_id 8YLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YLC _cell.length_a 57.901 _cell.length_b 78.791 _cell.length_c 162.394 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 164 A HIS 164 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 A NE2 HIS 200 A HIS 200 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc3 A OD2 ASP 201 A ASP 201 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc4 A OD1 ASP 201 A ASP 201 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc5 A OD2 ASP 318 A ASP 318 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc6 C ZN ZN . A ZN 601 1_555 I O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc7 C ZN ZN . A ZN 601 1_555 I O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc8 D MG MG . A MG 602 1_555 I O HOH . A HOH 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc9 D MG MG . A MG 602 1_555 I O HOH . A HOH 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc10 D MG MG . A MG 602 1_555 I O HOH . A HOH 723 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc11 D MG MG . A MG 602 1_555 I O HOH . A HOH 740 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc12 D MG MG . A MG 602 1_555 I O HOH . A HOH 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc13 B NE2 HIS 164 B HIS 164 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc14 B NE2 HIS 200 B HIS 200 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc15 B OD2 ASP 201 B ASP 201 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc16 B OD1 ASP 201 B ASP 201 1_555 G MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc17 B OD1 ASP 318 B ASP 318 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc18 F ZN ZN . B ZN 601 1_555 J O HOH . B HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc19 F ZN ZN . B ZN 601 1_555 J O HOH . B HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc20 G MG MG . B MG 602 1_555 J O HOH . B HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc21 G MG MG . B MG 602 1_555 J O HOH . B HOH 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc22 G MG MG . B MG 602 1_555 J O HOH . B HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc23 G MG MG . B MG 602 1_555 J O HOH . B HOH 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc24 G MG MG . B MG 602 1_555 J O HOH . B HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8YLC _atom_sites.fract_transf_matrix[1][1] 0.017271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 1 ZN ZN . D 3 MG A 1 602 1 MG MG . E 4 A1D6Q A 1 603 1 A1D6Q AME . F 2 ZN B 1 601 2 ZN ZN . G 3 MG B 1 602 2 MG MG . H 4 A1D6Q B 1 603 2 A1D6Q AME . I 5 HOH A 1 701 15 HOH HOH . I 5 HOH A 2 702 20 HOH HOH . I 5 HOH A 3 703 1 HOH HOH . I 5 HOH A 4 704 16 HOH HOH . I 5 HOH A 5 705 76 HOH HOH . I 5 HOH A 6 706 6 HOH HOH . I 5 HOH A 7 707 12 HOH HOH . I 5 HOH A 8 708 67 HOH HOH . I 5 HOH A 9 709 42 HOH HOH . I 5 HOH A 10 710 16 HOH HOH . I 5 HOH A 11 711 69 HOH HOH . I 5 HOH A 12 712 53 HOH HOH . I 5 HOH A 13 713 5 HOH HOH . I 5 HOH A 14 714 31 HOH HOH . I 5 HOH A 15 715 5 HOH HOH . I 5 HOH A 16 716 32 HOH HOH . I 5 HOH A 17 717 2 HOH HOH . I 5 HOH A 18 718 19 HOH HOH . I 5 HOH A 19 719 77 HOH HOH . I 5 HOH A 20 720 14 HOH HOH . I 5 HOH A 21 721 11 HOH HOH . I 5 HOH A 22 722 1 HOH HOH . I 5 HOH A 23 723 4 HOH HOH . I 5 HOH A 24 724 48 HOH HOH . I 5 HOH A 25 725 61 HOH HOH . I 5 HOH A 26 726 57 HOH HOH . I 5 HOH A 27 727 13 HOH HOH . I 5 HOH A 28 728 46 HOH HOH . I 5 HOH A 29 729 30 HOH HOH . I 5 HOH A 30 730 31 HOH HOH . I 5 HOH A 31 731 8 HOH HOH . I 5 HOH A 32 732 9 HOH HOH . I 5 HOH A 33 733 22 HOH HOH . I 5 HOH A 34 734 3 HOH HOH . I 5 HOH A 35 735 3 HOH HOH . I 5 HOH A 36 736 52 HOH HOH . I 5 HOH A 37 737 63 HOH HOH . I 5 HOH A 38 738 33 HOH HOH . I 5 HOH A 39 739 39 HOH HOH . I 5 HOH A 40 740 6 HOH HOH . I 5 HOH A 41 741 12 HOH HOH . I 5 HOH A 42 742 23 HOH HOH . I 5 HOH A 43 743 47 HOH HOH . I 5 HOH A 44 744 10 HOH HOH . I 5 HOH A 45 745 30 HOH HOH . I 5 HOH A 46 746 6 HOH HOH . I 5 HOH A 47 747 24 HOH HOH . I 5 HOH A 48 748 79 HOH HOH . I 5 HOH A 49 749 21 HOH HOH . I 5 HOH A 50 750 3 HOH HOH . I 5 HOH A 51 751 5 HOH HOH . I 5 HOH A 52 752 7 HOH HOH . I 5 HOH A 53 753 36 HOH HOH . I 5 HOH A 54 754 20 HOH HOH . I 5 HOH A 55 755 18 HOH HOH . I 5 HOH A 56 756 29 HOH HOH . I 5 HOH A 57 757 71 HOH HOH . I 5 HOH A 58 758 10 HOH HOH . I 5 HOH A 59 759 3 HOH HOH . I 5 HOH A 60 760 43 HOH HOH . I 5 HOH A 61 761 11 HOH HOH . I 5 HOH A 62 762 26 HOH HOH . I 5 HOH A 63 763 78 HOH HOH . I 5 HOH A 64 764 2 HOH HOH . I 5 HOH A 65 765 54 HOH HOH . I 5 HOH A 66 766 9 HOH HOH . I 5 HOH A 67 767 15 HOH HOH . I 5 HOH A 68 768 1 HOH HOH . I 5 HOH A 69 769 56 HOH HOH . I 5 HOH A 70 770 21 HOH HOH . I 5 HOH A 71 771 2 HOH HOH . I 5 HOH A 72 772 49 HOH HOH . I 5 HOH A 73 773 80 HOH HOH . I 5 HOH A 74 774 64 HOH HOH . I 5 HOH A 75 775 70 HOH HOH . I 5 HOH A 76 776 83 HOH HOH . I 5 HOH A 77 777 3 HOH HOH . I 5 HOH A 78 778 11 HOH HOH . I 5 HOH A 79 779 10 HOH HOH . J 5 HOH B 1 701 4 HOH HOH . J 5 HOH B 2 702 65 HOH HOH . J 5 HOH B 3 703 13 HOH HOH . J 5 HOH B 4 704 10 HOH HOH . J 5 HOH B 5 705 13 HOH HOH . J 5 HOH B 6 706 3 HOH HOH . J 5 HOH B 7 707 41 HOH HOH . J 5 HOH B 8 708 2 HOH HOH . J 5 HOH B 9 709 23 HOH HOH . J 5 HOH B 10 710 6 HOH HOH . J 5 HOH B 11 711 81 HOH HOH . J 5 HOH B 12 712 2 HOH HOH . J 5 HOH B 13 713 4 HOH HOH . J 5 HOH B 14 714 1 HOH HOH . J 5 HOH B 15 715 51 HOH HOH . J 5 HOH B 16 716 68 HOH HOH . J 5 HOH B 17 717 40 HOH HOH . J 5 HOH B 18 718 1 HOH HOH . J 5 HOH B 19 719 6 HOH HOH . J 5 HOH B 20 720 8 HOH HOH . J 5 HOH B 21 721 7 HOH HOH . J 5 HOH B 22 722 22 HOH HOH . J 5 HOH B 23 723 8 HOH HOH . J 5 HOH B 24 724 12 HOH HOH . J 5 HOH B 25 725 14 HOH HOH . J 5 HOH B 26 726 18 HOH HOH . J 5 HOH B 27 727 17 HOH HOH . J 5 HOH B 28 728 60 HOH HOH . J 5 HOH B 29 729 58 HOH HOH . J 5 HOH B 30 730 44 HOH HOH . J 5 HOH B 31 731 25 HOH HOH . J 5 HOH B 32 732 7 HOH HOH . J 5 HOH B 33 733 55 HOH HOH . J 5 HOH B 34 734 5 HOH HOH . J 5 HOH B 35 735 7 HOH HOH . J 5 HOH B 36 736 17 HOH HOH . J 5 HOH B 37 737 11 HOH HOH . J 5 HOH B 38 738 26 HOH HOH . J 5 HOH B 39 739 24 HOH HOH . J 5 HOH B 40 740 27 HOH HOH . J 5 HOH B 41 741 1 HOH HOH . J 5 HOH B 42 742 28 HOH HOH . J 5 HOH B 43 743 50 HOH HOH . J 5 HOH B 44 744 8 HOH HOH . J 5 HOH B 45 745 19 HOH HOH . J 5 HOH B 46 746 66 HOH HOH . J 5 HOH B 47 747 59 HOH HOH . J 5 HOH B 48 748 12 HOH HOH . J 5 HOH B 49 749 9 HOH HOH . J 5 HOH B 50 750 38 HOH HOH . J 5 HOH B 51 751 34 HOH HOH . J 5 HOH B 52 752 2 HOH HOH . J 5 HOH B 53 753 14 HOH HOH . J 5 HOH B 54 754 37 HOH HOH . J 5 HOH B 55 755 4 HOH HOH . J 5 HOH B 56 756 72 HOH HOH . J 5 HOH B 57 757 29 HOH HOH . J 5 HOH B 58 758 28 HOH HOH . J 5 HOH B 59 759 27 HOH HOH . J 5 HOH B 60 760 35 HOH HOH . J 5 HOH B 61 761 32 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x -23.021 _atom_site.Cartn_y -6.297 _atom_site.Cartn_z 64.888 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #