data_8YLE
#
_model_server_result.job_id            dOuhBjsImzEzP4TSSMSenw 
_model_server_result.datetime_utc      '2025-03-06 13:03:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yle 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8YLE 
#
_exptl.entry_id    8YLE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.88 
_cell.angle_gamma         90 
_cell.entry_id            8YLE 
_cell.length_a            49.663 
_cell.length_b            89.561 
_cell.length_c            54.359 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YLE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 42 A HIS 41 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc2 A OE2 GLU 47 A GLU 46 1_555 F ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc3 A NE2 HIS 292 A HIS 291 1_555 F ZN ZN . A ZN 505 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc4 A OE1 GLU 298 A GLU 297 1_555 F ZN ZN . A ZN 505 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc5 A OE2 GLU 298 A GLU 297 1_555 F ZN ZN . A ZN 505 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc6 A SG CYS 392 A CYS 391 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc7 A SG CYS 419 A CYS 418 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc8 A SG CYS 420 A CYS 419 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc9 A SG CYS 423 A CYS 422 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 134 n n 
C1 C2 EDO sing 135 n n 
C1 H11 EDO sing 136 n n 
C1 H12 EDO sing 137 n n 
O1 HO1 EDO sing 138 n n 
C2 O2 EDO sing 139 n n 
C2 H21 EDO sing 140 n n 
C2 H22 EDO sing 141 n n 
O2 HO2 EDO sing 142 n n 
#
_atom_sites.entry_id                     8YLE 
_atom_sites.fract_transf_matrix[1][1]    0.020136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004604 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011166 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018871 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACP A 1 501 501 ACP ACP . 
C 3 EDO A 1 502 502 EDO EDO . 
D 3 EDO A 1 503 503 EDO EDO . 
E 4 ZN A 1 504 1 ZN ZN . 
F 4 ZN A 1 505 2 ZN ZN . 
G 5 HOH A 1 601 99 HOH HOH . 
G 5 HOH A 2 602 173 HOH HOH . 
G 5 HOH A 3 603 189 HOH HOH . 
G 5 HOH A 4 604 6 HOH HOH . 
G 5 HOH A 5 605 205 HOH HOH . 
G 5 HOH A 6 606 104 HOH HOH . 
G 5 HOH A 7 607 157 HOH HOH . 
G 5 HOH A 8 608 228 HOH HOH . 
G 5 HOH A 9 609 136 HOH HOH . 
G 5 HOH A 10 610 50 HOH HOH . 
G 5 HOH A 11 611 32 HOH HOH . 
G 5 HOH A 12 612 164 HOH HOH . 
G 5 HOH A 13 613 11 HOH HOH . 
G 5 HOH A 14 614 134 HOH HOH . 
G 5 HOH A 15 615 33 HOH HOH . 
G 5 HOH A 16 616 24 HOH HOH . 
G 5 HOH A 17 617 92 HOH HOH . 
G 5 HOH A 18 618 63 HOH HOH . 
G 5 HOH A 19 619 233 HOH HOH . 
G 5 HOH A 20 620 90 HOH HOH . 
G 5 HOH A 21 621 10 HOH HOH . 
G 5 HOH A 22 622 200 HOH HOH . 
G 5 HOH A 23 623 129 HOH HOH . 
G 5 HOH A 24 624 36 HOH HOH . 
G 5 HOH A 25 625 114 HOH HOH . 
G 5 HOH A 26 626 18 HOH HOH . 
G 5 HOH A 27 627 39 HOH HOH . 
G 5 HOH A 28 628 161 HOH HOH . 
G 5 HOH A 29 629 29 HOH HOH . 
G 5 HOH A 30 630 17 HOH HOH . 
G 5 HOH A 31 631 56 HOH HOH . 
G 5 HOH A 32 632 70 HOH HOH . 
G 5 HOH A 33 633 117 HOH HOH . 
G 5 HOH A 34 634 101 HOH HOH . 
G 5 HOH A 35 635 138 HOH HOH . 
G 5 HOH A 36 636 51 HOH HOH . 
G 5 HOH A 37 637 61 HOH HOH . 
G 5 HOH A 38 638 81 HOH HOH . 
G 5 HOH A 39 639 180 HOH HOH . 
G 5 HOH A 40 640 5 HOH HOH . 
G 5 HOH A 41 641 89 HOH HOH . 
G 5 HOH A 42 642 168 HOH HOH . 
G 5 HOH A 43 643 107 HOH HOH . 
G 5 HOH A 44 644 79 HOH HOH . 
G 5 HOH A 45 645 153 HOH HOH . 
G 5 HOH A 46 646 178 HOH HOH . 
G 5 HOH A 47 647 71 HOH HOH . 
G 5 HOH A 48 648 143 HOH HOH . 
G 5 HOH A 49 649 20 HOH HOH . 
G 5 HOH A 50 650 211 HOH HOH . 
G 5 HOH A 51 651 43 HOH HOH . 
G 5 HOH A 52 652 156 HOH HOH . 
G 5 HOH A 53 653 154 HOH HOH . 
G 5 HOH A 54 654 14 HOH HOH . 
G 5 HOH A 55 655 2 HOH HOH . 
G 5 HOH A 56 656 9 HOH HOH . 
G 5 HOH A 57 657 30 HOH HOH . 
G 5 HOH A 58 658 44 HOH HOH . 
G 5 HOH A 59 659 47 HOH HOH . 
G 5 HOH A 60 660 119 HOH HOH . 
G 5 HOH A 61 661 105 HOH HOH . 
G 5 HOH A 62 662 25 HOH HOH . 
G 5 HOH A 63 663 57 HOH HOH . 
G 5 HOH A 64 664 40 HOH HOH . 
G 5 HOH A 65 665 4 HOH HOH . 
G 5 HOH A 66 666 3 HOH HOH . 
G 5 HOH A 67 667 141 HOH HOH . 
G 5 HOH A 68 668 77 HOH HOH . 
G 5 HOH A 69 669 34 HOH HOH . 
G 5 HOH A 70 670 68 HOH HOH . 
G 5 HOH A 71 671 73 HOH HOH . 
G 5 HOH A 72 672 115 HOH HOH . 
G 5 HOH A 73 673 76 HOH HOH . 
G 5 HOH A 74 674 42 HOH HOH . 
G 5 HOH A 75 675 41 HOH HOH . 
G 5 HOH A 76 676 234 HOH HOH . 
G 5 HOH A 77 677 78 HOH HOH . 
G 5 HOH A 78 678 121 HOH HOH . 
G 5 HOH A 79 679 27 HOH HOH . 
G 5 HOH A 80 680 1 HOH HOH . 
G 5 HOH A 81 681 196 HOH HOH . 
G 5 HOH A 82 682 8 HOH HOH . 
G 5 HOH A 83 683 112 HOH HOH . 
G 5 HOH A 84 684 130 HOH HOH . 
G 5 HOH A 85 685 60 HOH HOH . 
G 5 HOH A 86 686 28 HOH HOH . 
G 5 HOH A 87 687 72 HOH HOH . 
G 5 HOH A 88 688 209 HOH HOH . 
G 5 HOH A 89 689 184 HOH HOH . 
G 5 HOH A 90 690 131 HOH HOH . 
G 5 HOH A 91 691 66 HOH HOH . 
G 5 HOH A 92 692 98 HOH HOH . 
G 5 HOH A 93 693 159 HOH HOH . 
G 5 HOH A 94 694 163 HOH HOH . 
G 5 HOH A 95 695 213 HOH HOH . 
G 5 HOH A 96 696 23 HOH HOH . 
G 5 HOH A 97 697 124 HOH HOH . 
G 5 HOH A 98 698 225 HOH HOH . 
G 5 HOH A 99 699 55 HOH HOH . 
G 5 HOH A 100 700 202 HOH HOH . 
G 5 HOH A 101 701 230 HOH HOH . 
G 5 HOH A 102 702 38 HOH HOH . 
G 5 HOH A 103 703 48 HOH HOH . 
G 5 HOH A 104 704 183 HOH HOH . 
G 5 HOH A 105 705 165 HOH HOH . 
G 5 HOH A 106 706 118 HOH HOH . 
G 5 HOH A 107 707 94 HOH HOH . 
G 5 HOH A 108 708 174 HOH HOH . 
G 5 HOH A 109 709 182 HOH HOH . 
G 5 HOH A 110 710 53 HOH HOH . 
G 5 HOH A 111 711 204 HOH HOH . 
G 5 HOH A 112 712 13 HOH HOH . 
G 5 HOH A 113 713 35 HOH HOH . 
G 5 HOH A 114 714 82 HOH HOH . 
G 5 HOH A 115 715 169 HOH HOH . 
G 5 HOH A 116 716 12 HOH HOH . 
G 5 HOH A 117 717 147 HOH HOH . 
G 5 HOH A 118 718 84 HOH HOH . 
G 5 HOH A 119 719 74 HOH HOH . 
G 5 HOH A 120 720 128 HOH HOH . 
G 5 HOH A 121 721 19 HOH HOH . 
G 5 HOH A 122 722 146 HOH HOH . 
G 5 HOH A 123 723 102 HOH HOH . 
G 5 HOH A 124 724 88 HOH HOH . 
G 5 HOH A 125 725 15 HOH HOH . 
G 5 HOH A 126 726 46 HOH HOH . 
G 5 HOH A 127 727 126 HOH HOH . 
G 5 HOH A 128 728 187 HOH HOH . 
G 5 HOH A 129 729 188 HOH HOH . 
G 5 HOH A 130 730 110 HOH HOH . 
G 5 HOH A 131 731 222 HOH HOH . 
G 5 HOH A 132 732 192 HOH HOH . 
G 5 HOH A 133 733 16 HOH HOH . 
G 5 HOH A 134 734 21 HOH HOH . 
G 5 HOH A 135 735 140 HOH HOH . 
G 5 HOH A 136 736 217 HOH HOH . 
G 5 HOH A 137 737 64 HOH HOH . 
G 5 HOH A 138 738 155 HOH HOH . 
G 5 HOH A 139 739 139 HOH HOH . 
G 5 HOH A 140 740 127 HOH HOH . 
G 5 HOH A 141 741 231 HOH HOH . 
G 5 HOH A 142 742 144 HOH HOH . 
G 5 HOH A 143 743 194 HOH HOH . 
G 5 HOH A 144 744 100 HOH HOH . 
G 5 HOH A 145 745 7 HOH HOH . 
G 5 HOH A 146 746 108 HOH HOH . 
G 5 HOH A 147 747 26 HOH HOH . 
G 5 HOH A 148 748 172 HOH HOH . 
G 5 HOH A 149 749 85 HOH HOH . 
G 5 HOH A 150 750 69 HOH HOH . 
G 5 HOH A 151 751 123 HOH HOH . 
G 5 HOH A 152 752 96 HOH HOH . 
G 5 HOH A 153 753 199 HOH HOH . 
G 5 HOH A 154 754 22 HOH HOH . 
G 5 HOH A 155 755 31 HOH HOH . 
G 5 HOH A 156 756 203 HOH HOH . 
G 5 HOH A 157 757 93 HOH HOH . 
G 5 HOH A 158 758 170 HOH HOH . 
G 5 HOH A 159 759 67 HOH HOH . 
G 5 HOH A 160 760 190 HOH HOH . 
G 5 HOH A 161 761 65 HOH HOH . 
G 5 HOH A 162 762 80 HOH HOH . 
G 5 HOH A 163 763 86 HOH HOH . 
G 5 HOH A 164 764 152 HOH HOH . 
G 5 HOH A 165 765 151 HOH HOH . 
G 5 HOH A 166 766 103 HOH HOH . 
G 5 HOH A 167 767 216 HOH HOH . 
G 5 HOH A 168 768 158 HOH HOH . 
G 5 HOH A 169 769 58 HOH HOH . 
G 5 HOH A 170 770 210 HOH HOH . 
G 5 HOH A 171 771 106 HOH HOH . 
G 5 HOH A 172 772 111 HOH HOH . 
G 5 HOH A 173 773 83 HOH HOH . 
G 5 HOH A 174 774 176 HOH HOH . 
G 5 HOH A 175 775 132 HOH HOH . 
G 5 HOH A 176 776 91 HOH HOH . 
G 5 HOH A 177 777 49 HOH HOH . 
G 5 HOH A 178 778 193 HOH HOH . 
G 5 HOH A 179 779 122 HOH HOH . 
G 5 HOH A 180 780 148 HOH HOH . 
G 5 HOH A 181 781 179 HOH HOH . 
G 5 HOH A 182 782 133 HOH HOH . 
G 5 HOH A 183 783 175 HOH HOH . 
G 5 HOH A 184 784 226 HOH HOH . 
G 5 HOH A 185 785 37 HOH HOH . 
G 5 HOH A 186 786 149 HOH HOH . 
G 5 HOH A 187 787 54 HOH HOH . 
G 5 HOH A 188 788 166 HOH HOH . 
G 5 HOH A 189 789 137 HOH HOH . 
G 5 HOH A 190 790 185 HOH HOH . 
G 5 HOH A 191 791 120 HOH HOH . 
G 5 HOH A 192 792 116 HOH HOH . 
G 5 HOH A 193 793 45 HOH HOH . 
G 5 HOH A 194 794 218 HOH HOH . 
G 5 HOH A 195 795 212 HOH HOH . 
G 5 HOH A 196 796 223 HOH HOH . 
G 5 HOH A 197 797 181 HOH HOH . 
G 5 HOH A 198 798 87 HOH HOH . 
G 5 HOH A 199 799 162 HOH HOH . 
G 5 HOH A 200 800 62 HOH HOH . 
G 5 HOH A 201 801 195 HOH HOH . 
G 5 HOH A 202 802 227 HOH HOH . 
G 5 HOH A 203 803 235 HOH HOH . 
G 5 HOH A 204 804 145 HOH HOH . 
G 5 HOH A 205 805 150 HOH HOH . 
G 5 HOH A 206 806 191 HOH HOH . 
G 5 HOH A 207 807 59 HOH HOH . 
G 5 HOH A 208 808 186 HOH HOH . 
G 5 HOH A 209 809 215 HOH HOH . 
G 5 HOH A 210 810 52 HOH HOH . 
G 5 HOH A 211 811 220 HOH HOH . 
G 5 HOH A 212 812 125 HOH HOH . 
G 5 HOH A 213 813 75 HOH HOH . 
G 5 HOH A 214 814 160 HOH HOH . 
G 5 HOH A 215 815 97 HOH HOH . 
G 5 HOH A 216 816 113 HOH HOH . 
G 5 HOH A 217 817 197 HOH HOH . 
G 5 HOH A 218 818 207 HOH HOH . 
G 5 HOH A 219 819 177 HOH HOH . 
G 5 HOH A 220 820 109 HOH HOH . 
G 5 HOH A 221 821 201 HOH HOH . 
G 5 HOH A 222 822 95 HOH HOH . 
G 5 HOH A 223 823 142 HOH HOH . 
G 5 HOH A 224 824 219 HOH HOH . 
G 5 HOH A 225 825 135 HOH HOH . 
G 5 HOH A 226 826 206 HOH HOH . 
G 5 HOH A 227 827 224 HOH HOH . 
G 5 HOH A 228 828 221 HOH HOH . 
G 5 HOH A 229 829 171 HOH HOH . 
G 5 HOH A 230 830 198 HOH HOH . 
G 5 HOH A 231 831 232 HOH HOH . 
G 5 HOH A 232 832 214 HOH HOH . 
G 5 HOH A 233 833 167 HOH HOH . 
G 5 HOH A 234 834 229 HOH HOH . 
G 5 HOH A 235 835 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 -12.404 -12.534 6.683 1 33.92 ? C1 EDO 502 A 1 
HETATM 2 O O1 EDO . . . C 3 -12.139 -11.904 7.945 1 27.01 ? O1 EDO 502 A 1 
HETATM 3 C C2 EDO . . . C 3 -11.198 -13.308 6.165 1 34.99 ? C2 EDO 502 A 1 
HETATM 4 O O2 EDO . . . C 3 -10.05 -12.456 6.037 1 27.16 ? O2 EDO 502 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#