data_8YLK # _model_server_result.job_id 9WFjuw_5lzKuwQfJAnADIA _model_server_result.datetime_utc '2025-07-07 19:16:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ylk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8YLK # _exptl.entry_id 8YLK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'URIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8YLK _cell.length_a 62.942 _cell.length_b 62.942 _cell.length_c 77.568 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YLK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 25.856 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N4 O3' _chem_comp.formula_weight 168.11 _chem_comp.id URC _chem_comp.mon_nstd_flag . _chem_comp.name 'URIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,9-DIHYDRO-1H-PURINE-2,6,8(3H)-TRIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URC sing 345 n y N1 C6 URC sing 346 n y N1 HN1 URC sing 347 n n C2 N3 URC sing 348 n y C2 O11 URC doub 349 n n C6 C5 URC sing 350 n y C6 O13 URC doub 351 n n N3 C4 URC sing 352 n y N3 HN3 URC sing 353 n n C4 C5 URC doub 354 n y C4 N9 URC sing 355 n y C5 N7 URC sing 356 n y N9 C8 URC sing 357 n y N9 HN9 URC sing 358 n n N7 C8 URC sing 359 n y N7 HN7 URC sing 360 n n C8 O24 URC doub 361 n n # _atom_sites.entry_id 8YLK _atom_sites.fract_transf_matrix[1][1] 0.015888 _atom_sites.fract_transf_matrix[1][2] 0.009173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URC A 1 201 1 URC URC . C 3 HOH A 1 301 11 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 21 HOH HOH . C 3 HOH A 4 304 6 HOH HOH . C 3 HOH A 5 305 10 HOH HOH . C 3 HOH A 6 306 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URC . . . B 2 21.382 -8.606 7.308 1 50.1 ? N1 URC 201 A 1 HETATM 2 C C2 URC . . . B 2 22.593 -8.896 7.895 1 48.24 ? C2 URC 201 A 1 HETATM 3 C C6 URC . . . B 2 20.337 -9.516 7.134 1 49.86 ? C6 URC 201 A 1 HETATM 4 N N3 URC . . . B 2 22.811 -10.171 8.351 1 48.98 ? N3 URC 201 A 1 HETATM 5 O O11 URC . . . B 2 23.465 -8.05 8.014 1 46.84 ? O11 URC 201 A 1 HETATM 6 C C4 URC . . . B 2 21.851 -11.119 8.225 1 49 ? C4 URC 201 A 1 HETATM 7 C C5 URC . . . B 2 20.616 -10.818 7.627 1 51.78 ? C5 URC 201 A 1 HETATM 8 N N9 URC . . . B 2 21.818 -12.444 8.59 1 49.75 ? N9 URC 201 A 1 HETATM 9 O O13 URC . . . B 2 19.284 -9.151 6.596 1 45.48 ? O13 URC 201 A 1 HETATM 10 N N7 URC . . . B 2 19.869 -11.972 7.648 1 53.14 ? N7 URC 201 A 1 HETATM 11 C C8 URC . . . B 2 20.603 -12.964 8.238 1 50.31 ? C8 URC 201 A 1 HETATM 12 O O24 URC . . . B 2 20.235 -14.13 8.418 1 49.72 ? O24 URC 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #