data_8YLL # _model_server_result.job_id 4R4wHQFpwY38yHFrnrgH9Q _model_server_result.datetime_utc '2024-11-16 16:45:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8YLL # _exptl.entry_id 8YLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.111 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description XANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8YLL _cell.length_a 62.462 _cell.length_b 62.462 _cell.length_c 77.06 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 77.06 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N4 O2' _chem_comp.formula_weight 152.111 _chem_comp.id XAN _chem_comp.mon_nstd_flag . _chem_comp.name XANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C4 XAN sing 363 n y N9 C8 XAN sing 364 n y N9 HN9 XAN sing 365 n n C4 N3 XAN sing 366 n y C4 C5 XAN doub 367 n y N3 C2 XAN sing 368 n y N3 HN3 XAN sing 369 n n C2 O2 XAN doub 370 n n C2 N1 XAN sing 371 n y N1 C6 XAN sing 372 n y N1 HN1 XAN sing 373 n n C6 O6 XAN doub 374 n n C6 C5 XAN sing 375 n y C5 N7 XAN sing 376 n y N7 C8 XAN doub 377 n y C8 H8 XAN sing 378 n n # _atom_sites.entry_id 8YLL _atom_sites.fract_transf_matrix[1][1] 0.01601 _atom_sites.fract_transf_matrix[1][2] 0.009243 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XAN A 1 201 1 XAN XAN . C 3 HOH A 1 301 17 HOH HOH . C 3 HOH A 2 302 30 HOH HOH . C 3 HOH A 3 303 13 HOH HOH . C 3 HOH A 4 304 8 HOH HOH . C 3 HOH A 5 305 3 HOH HOH . C 3 HOH A 6 306 7 HOH HOH . C 3 HOH A 7 307 2 HOH HOH . C 3 HOH A 8 308 9 HOH HOH . C 3 HOH A 9 309 10 HOH HOH . C 3 HOH A 10 310 16 HOH HOH . C 3 HOH A 11 311 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 XAN . . . B 2 31.388 29.519 34.439 1 53.65 ? N9 XAN 201 A 1 HETATM 2 C C4 XAN . . . B 2 32.573 30.078 34.034 1 53.39 ? C4 XAN 201 A 1 HETATM 3 N N3 XAN . . . B 2 33.874 29.72 34.201 1 51.67 ? N3 XAN 201 A 1 HETATM 4 C C2 XAN . . . B 2 34.881 30.484 33.668 1 53.07 ? C2 XAN 201 A 1 HETATM 5 O O2 XAN . . . B 2 36.046 30.156 33.829 1 46.05 ? O2 XAN 201 A 1 HETATM 6 N N1 XAN . . . B 2 34.541 31.618 32.962 1 54.8 ? N1 XAN 201 A 1 HETATM 7 C C6 XAN . . . B 2 33.229 32.061 32.745 1 52.84 ? C6 XAN 201 A 1 HETATM 8 O O6 XAN . . . B 2 33.034 33.099 32.101 1 43.17 ? O6 XAN 201 A 1 HETATM 9 C C5 XAN . . . B 2 32.231 31.227 33.321 1 53.01 ? C5 XAN 201 A 1 HETATM 10 N N7 XAN . . . B 2 30.845 31.351 33.306 1 60.18 ? N7 XAN 201 A 1 HETATM 11 C C8 XAN . . . B 2 30.405 30.311 33.978 1 52.62 ? C8 XAN 201 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 942 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 11 #