data_8YM3 # _model_server_result.job_id TTiQ54iYC3z4b8U8g9mqIw _model_server_result.datetime_utc '2025-05-14 05:59:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ym3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8YM3 # _exptl.entry_id 8YM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.74 _cell.angle_gamma 90 _cell.entry_id 8YM3 _cell.length_a 54.897 _cell.length_b 86.548 _cell.length_c 60.775 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 25 A THR 26 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc2 D O2B GDP . A GDP 503 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc3 G MG MG . A MG 506 1_555 H O HOH . A HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc4 G MG MG . A MG 506 1_555 H O HOH . A HOH 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc5 G MG MG . A MG 506 1_555 H O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 G MG MG . A MG 506 1_555 H O HOH . A HOH 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 92 n n PB O2B GDP sing 93 n n PB O3B GDP sing 94 n n PB O3A GDP sing 95 n n O2B HOB2 GDP sing 96 n n O3B HOB3 GDP sing 97 n n O3A PA GDP sing 98 n n PA O1A GDP doub 99 n n PA O2A GDP sing 100 n n PA O5' GDP sing 101 n n O2A HOA2 GDP sing 102 n n O5' C5' GDP sing 103 n n C5' C4' GDP sing 104 n n C5' H5' GDP sing 105 n n C5' "H5''" GDP sing 106 n n C4' O4' GDP sing 107 n n C4' C3' GDP sing 108 n n C4' H4' GDP sing 109 n n O4' C1' GDP sing 110 n n C3' O3' GDP sing 111 n n C3' C2' GDP sing 112 n n C3' H3' GDP sing 113 n n O3' HO3' GDP sing 114 n n C2' O2' GDP sing 115 n n C2' C1' GDP sing 116 n n C2' H2' GDP sing 117 n n O2' HO2' GDP sing 118 n n C1' N9 GDP sing 119 n n C1' H1' GDP sing 120 n n N9 C8 GDP sing 121 n y N9 C4 GDP sing 122 n y C8 N7 GDP doub 123 n y C8 H8 GDP sing 124 n n N7 C5 GDP sing 125 n y C5 C6 GDP sing 126 n n C5 C4 GDP doub 127 n y C6 O6 GDP doub 128 n n C6 N1 GDP sing 129 n n N1 C2 GDP sing 130 n n N1 HN1 GDP sing 131 n n C2 N2 GDP sing 132 n n C2 N3 GDP doub 133 n n N2 HN21 GDP sing 134 n n N2 HN22 GDP sing 135 n n N3 C4 GDP sing 136 n n # _atom_sites.entry_id 8YM3 _atom_sites.fract_transf_matrix[1][1] 0.018216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001829 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 504 GOL GOL . C 2 GOL A 1 502 507 GOL GOL . D 3 GDP A 1 503 508 GDP GDP . E 4 BME A 1 504 509 BME BME . F 4 BME A 1 505 510 BME BME . G 5 MG A 1 506 2 MG MG . H 6 HOH A 1 601 314 HOH HOH . H 6 HOH A 2 602 440 HOH HOH . H 6 HOH A 3 603 359 HOH HOH . H 6 HOH A 4 604 439 HOH HOH . H 6 HOH A 5 605 264 HOH HOH . H 6 HOH A 6 606 407 HOH HOH . H 6 HOH A 7 607 350 HOH HOH . H 6 HOH A 8 608 137 HOH HOH . H 6 HOH A 9 609 414 HOH HOH . H 6 HOH A 10 610 124 HOH HOH . H 6 HOH A 11 611 229 HOH HOH . H 6 HOH A 12 612 231 HOH HOH . H 6 HOH A 13 613 424 HOH HOH . H 6 HOH A 14 614 377 HOH HOH . H 6 HOH A 15 615 172 HOH HOH . H 6 HOH A 16 616 311 HOH HOH . H 6 HOH A 17 617 399 HOH HOH . H 6 HOH A 18 618 382 HOH HOH . H 6 HOH A 19 619 192 HOH HOH . H 6 HOH A 20 620 125 HOH HOH . H 6 HOH A 21 621 73 HOH HOH . H 6 HOH A 22 622 397 HOH HOH . H 6 HOH A 23 623 308 HOH HOH . H 6 HOH A 24 624 389 HOH HOH . H 6 HOH A 25 625 208 HOH HOH . H 6 HOH A 26 626 263 HOH HOH . H 6 HOH A 27 627 272 HOH HOH . H 6 HOH A 28 628 152 HOH HOH . H 6 HOH A 29 629 391 HOH HOH . H 6 HOH A 30 630 220 HOH HOH . H 6 HOH A 31 631 79 HOH HOH . H 6 HOH A 32 632 67 HOH HOH . H 6 HOH A 33 633 184 HOH HOH . H 6 HOH A 34 634 84 HOH HOH . H 6 HOH A 35 635 129 HOH HOH . H 6 HOH A 36 636 162 HOH HOH . H 6 HOH A 37 637 320 HOH HOH . H 6 HOH A 38 638 193 HOH HOH . H 6 HOH A 39 639 132 HOH HOH . H 6 HOH A 40 640 147 HOH HOH . H 6 HOH A 41 641 145 HOH HOH . H 6 HOH A 42 642 401 HOH HOH . H 6 HOH A 43 643 49 HOH HOH . H 6 HOH A 44 644 57 HOH HOH . H 6 HOH A 45 645 356 HOH HOH . H 6 HOH A 46 646 249 HOH HOH . H 6 HOH A 47 647 161 HOH HOH . H 6 HOH A 48 648 142 HOH HOH . H 6 HOH A 49 649 72 HOH HOH . H 6 HOH A 50 650 167 HOH HOH . H 6 HOH A 51 651 118 HOH HOH . H 6 HOH A 52 652 241 HOH HOH . H 6 HOH A 53 653 257 HOH HOH . H 6 HOH A 54 654 237 HOH HOH . H 6 HOH A 55 655 386 HOH HOH . H 6 HOH A 56 656 48 HOH HOH . H 6 HOH A 57 657 151 HOH HOH . H 6 HOH A 58 658 163 HOH HOH . H 6 HOH A 59 659 400 HOH HOH . H 6 HOH A 60 660 387 HOH HOH . H 6 HOH A 61 661 160 HOH HOH . H 6 HOH A 62 662 381 HOH HOH . H 6 HOH A 63 663 18 HOH HOH . H 6 HOH A 64 664 22 HOH HOH . H 6 HOH A 65 665 105 HOH HOH . H 6 HOH A 66 666 157 HOH HOH . H 6 HOH A 67 667 187 HOH HOH . H 6 HOH A 68 668 434 HOH HOH . H 6 HOH A 69 669 59 HOH HOH . H 6 HOH A 70 670 374 HOH HOH . H 6 HOH A 71 671 70 HOH HOH . H 6 HOH A 72 672 98 HOH HOH . H 6 HOH A 73 673 93 HOH HOH . H 6 HOH A 74 674 33 HOH HOH . H 6 HOH A 75 675 177 HOH HOH . H 6 HOH A 76 676 310 HOH HOH . H 6 HOH A 77 677 32 HOH HOH . H 6 HOH A 78 678 56 HOH HOH . H 6 HOH A 79 679 66 HOH HOH . H 6 HOH A 80 680 334 HOH HOH . H 6 HOH A 81 681 3 HOH HOH . H 6 HOH A 82 682 139 HOH HOH . H 6 HOH A 83 683 80 HOH HOH . H 6 HOH A 84 684 222 HOH HOH . H 6 HOH A 85 685 27 HOH HOH . H 6 HOH A 86 686 104 HOH HOH . H 6 HOH A 87 687 130 HOH HOH . H 6 HOH A 88 688 388 HOH HOH . H 6 HOH A 89 689 252 HOH HOH . H 6 HOH A 90 690 51 HOH HOH . H 6 HOH A 91 691 101 HOH HOH . H 6 HOH A 92 692 81 HOH HOH . H 6 HOH A 93 693 176 HOH HOH . H 6 HOH A 94 694 10 HOH HOH . H 6 HOH A 95 695 166 HOH HOH . H 6 HOH A 96 696 109 HOH HOH . H 6 HOH A 97 697 210 HOH HOH . H 6 HOH A 98 698 134 HOH HOH . H 6 HOH A 99 699 277 HOH HOH . H 6 HOH A 100 700 188 HOH HOH . H 6 HOH A 101 701 69 HOH HOH . H 6 HOH A 102 702 38 HOH HOH . H 6 HOH A 103 703 50 HOH HOH . H 6 HOH A 104 704 6 HOH HOH . H 6 HOH A 105 705 44 HOH HOH . H 6 HOH A 106 706 116 HOH HOH . H 6 HOH A 107 707 209 HOH HOH . H 6 HOH A 108 708 90 HOH HOH . H 6 HOH A 109 709 34 HOH HOH . H 6 HOH A 110 710 64 HOH HOH . H 6 HOH A 111 711 221 HOH HOH . H 6 HOH A 112 712 45 HOH HOH . H 6 HOH A 113 713 12 HOH HOH . H 6 HOH A 114 714 375 HOH HOH . H 6 HOH A 115 715 20 HOH HOH . H 6 HOH A 116 716 108 HOH HOH . H 6 HOH A 117 717 29 HOH HOH . H 6 HOH A 118 718 240 HOH HOH . H 6 HOH A 119 719 354 HOH HOH . H 6 HOH A 120 720 36 HOH HOH . H 6 HOH A 121 721 289 HOH HOH . H 6 HOH A 122 722 15 HOH HOH . H 6 HOH A 123 723 143 HOH HOH . H 6 HOH A 124 724 191 HOH HOH . H 6 HOH A 125 725 31 HOH HOH . H 6 HOH A 126 726 202 HOH HOH . H 6 HOH A 127 727 261 HOH HOH . H 6 HOH A 128 728 133 HOH HOH . H 6 HOH A 129 729 205 HOH HOH . H 6 HOH A 130 730 62 HOH HOH . H 6 HOH A 131 731 26 HOH HOH . H 6 HOH A 132 732 43 HOH HOH . H 6 HOH A 133 733 301 HOH HOH . H 6 HOH A 134 734 183 HOH HOH . H 6 HOH A 135 735 4 HOH HOH . H 6 HOH A 136 736 19 HOH HOH . H 6 HOH A 137 737 61 HOH HOH . H 6 HOH A 138 738 422 HOH HOH . H 6 HOH A 139 739 149 HOH HOH . H 6 HOH A 140 740 195 HOH HOH . H 6 HOH A 141 741 299 HOH HOH . H 6 HOH A 142 742 91 HOH HOH . H 6 HOH A 143 743 330 HOH HOH . H 6 HOH A 144 744 77 HOH HOH . H 6 HOH A 145 745 39 HOH HOH . H 6 HOH A 146 746 35 HOH HOH . H 6 HOH A 147 747 71 HOH HOH . H 6 HOH A 148 748 154 HOH HOH . H 6 HOH A 149 749 225 HOH HOH . H 6 HOH A 150 750 25 HOH HOH . H 6 HOH A 151 751 182 HOH HOH . H 6 HOH A 152 752 75 HOH HOH . H 6 HOH A 153 753 85 HOH HOH . H 6 HOH A 154 754 24 HOH HOH . H 6 HOH A 155 755 404 HOH HOH . H 6 HOH A 156 756 175 HOH HOH . H 6 HOH A 157 757 8 HOH HOH . H 6 HOH A 158 758 110 HOH HOH . H 6 HOH A 159 759 115 HOH HOH . H 6 HOH A 160 760 312 HOH HOH . H 6 HOH A 161 761 55 HOH HOH . H 6 HOH A 162 762 250 HOH HOH . H 6 HOH A 163 763 113 HOH HOH . H 6 HOH A 164 764 135 HOH HOH . H 6 HOH A 165 765 60 HOH HOH . H 6 HOH A 166 766 376 HOH HOH . H 6 HOH A 167 767 144 HOH HOH . H 6 HOH A 168 768 245 HOH HOH . H 6 HOH A 169 769 13 HOH HOH . H 6 HOH A 170 770 148 HOH HOH . H 6 HOH A 171 771 122 HOH HOH . H 6 HOH A 172 772 197 HOH HOH . H 6 HOH A 173 773 420 HOH HOH . H 6 HOH A 174 774 159 HOH HOH . H 6 HOH A 175 775 121 HOH HOH . H 6 HOH A 176 776 14 HOH HOH . H 6 HOH A 177 777 169 HOH HOH . H 6 HOH A 178 778 47 HOH HOH . H 6 HOH A 179 779 396 HOH HOH . H 6 HOH A 180 780 114 HOH HOH . H 6 HOH A 181 781 186 HOH HOH . H 6 HOH A 182 782 21 HOH HOH . H 6 HOH A 183 783 281 HOH HOH . H 6 HOH A 184 784 155 HOH HOH . H 6 HOH A 185 785 16 HOH HOH . H 6 HOH A 186 786 54 HOH HOH . H 6 HOH A 187 787 317 HOH HOH . H 6 HOH A 188 788 367 HOH HOH . H 6 HOH A 189 789 9 HOH HOH . H 6 HOH A 190 790 247 HOH HOH . H 6 HOH A 191 791 347 HOH HOH . H 6 HOH A 192 792 362 HOH HOH . H 6 HOH A 193 793 146 HOH HOH . H 6 HOH A 194 794 150 HOH HOH . H 6 HOH A 195 795 23 HOH HOH . H 6 HOH A 196 796 204 HOH HOH . H 6 HOH A 197 797 319 HOH HOH . H 6 HOH A 198 798 17 HOH HOH . H 6 HOH A 199 799 199 HOH HOH . H 6 HOH A 200 800 258 HOH HOH . H 6 HOH A 201 801 53 HOH HOH . H 6 HOH A 202 802 82 HOH HOH . H 6 HOH A 203 803 78 HOH HOH . H 6 HOH A 204 804 358 HOH HOH . H 6 HOH A 205 805 111 HOH HOH . H 6 HOH A 206 806 65 HOH HOH . H 6 HOH A 207 807 294 HOH HOH . H 6 HOH A 208 808 92 HOH HOH . H 6 HOH A 209 809 211 HOH HOH . H 6 HOH A 210 810 46 HOH HOH . H 6 HOH A 211 811 428 HOH HOH . H 6 HOH A 212 812 106 HOH HOH . H 6 HOH A 213 813 89 HOH HOH . H 6 HOH A 214 814 408 HOH HOH . H 6 HOH A 215 815 7 HOH HOH . H 6 HOH A 216 816 190 HOH HOH . H 6 HOH A 217 817 117 HOH HOH . H 6 HOH A 218 818 343 HOH HOH . H 6 HOH A 219 819 335 HOH HOH . H 6 HOH A 220 820 37 HOH HOH . H 6 HOH A 221 821 185 HOH HOH . H 6 HOH A 222 822 236 HOH HOH . H 6 HOH A 223 823 100 HOH HOH . H 6 HOH A 224 824 418 HOH HOH . H 6 HOH A 225 825 348 HOH HOH . H 6 HOH A 226 826 103 HOH HOH . H 6 HOH A 227 827 306 HOH HOH . H 6 HOH A 228 828 28 HOH HOH . H 6 HOH A 229 829 74 HOH HOH . H 6 HOH A 230 830 304 HOH HOH . H 6 HOH A 231 831 253 HOH HOH . H 6 HOH A 232 832 284 HOH HOH . H 6 HOH A 233 833 200 HOH HOH . H 6 HOH A 234 834 291 HOH HOH . H 6 HOH A 235 835 140 HOH HOH . H 6 HOH A 236 836 76 HOH HOH . H 6 HOH A 237 837 11 HOH HOH . H 6 HOH A 238 838 339 HOH HOH . H 6 HOH A 239 839 58 HOH HOH . H 6 HOH A 240 840 216 HOH HOH . H 6 HOH A 241 841 201 HOH HOH . H 6 HOH A 242 842 429 HOH HOH . H 6 HOH A 243 843 196 HOH HOH . H 6 HOH A 244 844 68 HOH HOH . H 6 HOH A 245 845 321 HOH HOH . H 6 HOH A 246 846 262 HOH HOH . H 6 HOH A 247 847 212 HOH HOH . H 6 HOH A 248 848 207 HOH HOH . H 6 HOH A 249 849 136 HOH HOH . H 6 HOH A 250 850 214 HOH HOH . H 6 HOH A 251 851 198 HOH HOH . H 6 HOH A 252 852 52 HOH HOH . H 6 HOH A 253 853 5 HOH HOH . H 6 HOH A 254 854 344 HOH HOH . H 6 HOH A 255 855 41 HOH HOH . H 6 HOH A 256 856 254 HOH HOH . H 6 HOH A 257 857 2 HOH HOH . H 6 HOH A 258 858 87 HOH HOH . H 6 HOH A 259 859 227 HOH HOH . H 6 HOH A 260 860 244 HOH HOH . H 6 HOH A 261 861 276 HOH HOH . H 6 HOH A 262 862 1 HOH HOH . H 6 HOH A 263 863 238 HOH HOH . H 6 HOH A 264 864 346 HOH HOH . H 6 HOH A 265 865 165 HOH HOH . H 6 HOH A 266 866 448 HOH HOH . H 6 HOH A 267 867 371 HOH HOH . H 6 HOH A 268 868 309 HOH HOH . H 6 HOH A 269 869 411 HOH HOH . H 6 HOH A 270 870 278 HOH HOH . H 6 HOH A 271 871 131 HOH HOH . H 6 HOH A 272 872 323 HOH HOH . H 6 HOH A 273 873 96 HOH HOH . H 6 HOH A 274 874 170 HOH HOH . H 6 HOH A 275 875 385 HOH HOH . H 6 HOH A 276 876 88 HOH HOH . H 6 HOH A 277 877 86 HOH HOH . H 6 HOH A 278 878 181 HOH HOH . H 6 HOH A 279 879 224 HOH HOH . H 6 HOH A 280 880 379 HOH HOH . H 6 HOH A 281 881 235 HOH HOH . H 6 HOH A 282 882 361 HOH HOH . H 6 HOH A 283 883 349 HOH HOH . H 6 HOH A 284 884 394 HOH HOH . H 6 HOH A 285 885 226 HOH HOH . H 6 HOH A 286 886 328 HOH HOH . H 6 HOH A 287 887 325 HOH HOH . H 6 HOH A 288 888 426 HOH HOH . H 6 HOH A 289 889 402 HOH HOH . H 6 HOH A 290 890 395 HOH HOH . H 6 HOH A 291 891 338 HOH HOH . H 6 HOH A 292 892 219 HOH HOH . H 6 HOH A 293 893 415 HOH HOH . H 6 HOH A 294 894 341 HOH HOH . H 6 HOH A 295 895 373 HOH HOH . H 6 HOH A 296 896 102 HOH HOH . H 6 HOH A 297 897 357 HOH HOH . H 6 HOH A 298 898 30 HOH HOH . H 6 HOH A 299 899 298 HOH HOH . H 6 HOH A 300 900 419 HOH HOH . H 6 HOH A 301 901 318 HOH HOH . H 6 HOH A 302 902 366 HOH HOH . H 6 HOH A 303 903 119 HOH HOH . H 6 HOH A 304 904 234 HOH HOH . H 6 HOH A 305 905 83 HOH HOH . H 6 HOH A 306 906 42 HOH HOH . H 6 HOH A 307 907 270 HOH HOH . H 6 HOH A 308 908 315 HOH HOH . H 6 HOH A 309 909 329 HOH HOH . H 6 HOH A 310 910 337 HOH HOH . H 6 HOH A 311 911 126 HOH HOH . H 6 HOH A 312 912 390 HOH HOH . H 6 HOH A 313 913 403 HOH HOH . H 6 HOH A 314 914 443 HOH HOH . H 6 HOH A 315 915 267 HOH HOH . H 6 HOH A 316 916 97 HOH HOH . H 6 HOH A 317 917 413 HOH HOH . H 6 HOH A 318 918 168 HOH HOH . H 6 HOH A 319 919 265 HOH HOH . H 6 HOH A 320 920 293 HOH HOH . H 6 HOH A 321 921 259 HOH HOH . H 6 HOH A 322 922 40 HOH HOH . H 6 HOH A 323 923 444 HOH HOH . H 6 HOH A 324 924 164 HOH HOH . H 6 HOH A 325 925 416 HOH HOH . H 6 HOH A 326 926 189 HOH HOH . H 6 HOH A 327 927 363 HOH HOH . H 6 HOH A 328 928 268 HOH HOH . H 6 HOH A 329 929 345 HOH HOH . H 6 HOH A 330 930 331 HOH HOH . H 6 HOH A 331 931 368 HOH HOH . H 6 HOH A 332 932 156 HOH HOH . H 6 HOH A 333 933 425 HOH HOH . H 6 HOH A 334 934 138 HOH HOH . H 6 HOH A 335 935 112 HOH HOH . H 6 HOH A 336 936 206 HOH HOH . H 6 HOH A 337 937 128 HOH HOH . H 6 HOH A 338 938 336 HOH HOH . H 6 HOH A 339 939 290 HOH HOH . H 6 HOH A 340 940 430 HOH HOH . H 6 HOH A 341 941 99 HOH HOH . H 6 HOH A 342 942 123 HOH HOH . H 6 HOH A 343 943 194 HOH HOH . H 6 HOH A 344 944 421 HOH HOH . H 6 HOH A 345 945 393 HOH HOH . H 6 HOH A 346 946 378 HOH HOH . H 6 HOH A 347 947 406 HOH HOH . H 6 HOH A 348 948 230 HOH HOH . H 6 HOH A 349 949 340 HOH HOH . H 6 HOH A 350 950 365 HOH HOH . H 6 HOH A 351 951 313 HOH HOH . H 6 HOH A 352 952 180 HOH HOH . H 6 HOH A 353 953 423 HOH HOH . H 6 HOH A 354 954 383 HOH HOH . H 6 HOH A 355 955 282 HOH HOH . H 6 HOH A 356 956 286 HOH HOH . H 6 HOH A 357 957 372 HOH HOH . H 6 HOH A 358 958 251 HOH HOH . H 6 HOH A 359 959 445 HOH HOH . H 6 HOH A 360 960 352 HOH HOH . H 6 HOH A 361 961 307 HOH HOH . H 6 HOH A 362 962 392 HOH HOH . H 6 HOH A 363 963 285 HOH HOH . H 6 HOH A 364 964 398 HOH HOH . H 6 HOH A 365 965 427 HOH HOH . H 6 HOH A 366 966 248 HOH HOH . H 6 HOH A 367 967 333 HOH HOH . H 6 HOH A 368 968 213 HOH HOH . H 6 HOH A 369 969 412 HOH HOH . H 6 HOH A 370 970 280 HOH HOH . H 6 HOH A 371 971 246 HOH HOH . H 6 HOH A 372 972 153 HOH HOH . H 6 HOH A 373 973 95 HOH HOH . H 6 HOH A 374 974 107 HOH HOH . H 6 HOH A 375 975 94 HOH HOH . H 6 HOH A 376 976 300 HOH HOH . H 6 HOH A 377 977 370 HOH HOH . H 6 HOH A 378 978 292 HOH HOH . H 6 HOH A 379 979 120 HOH HOH . H 6 HOH A 380 980 438 HOH HOH . H 6 HOH A 381 981 380 HOH HOH . H 6 HOH A 382 982 351 HOH HOH . H 6 HOH A 383 983 275 HOH HOH . H 6 HOH A 384 984 332 HOH HOH . H 6 HOH A 385 985 305 HOH HOH . H 6 HOH A 386 986 243 HOH HOH . H 6 HOH A 387 987 446 HOH HOH . H 6 HOH A 388 988 327 HOH HOH . H 6 HOH A 389 989 255 HOH HOH . H 6 HOH A 390 990 436 HOH HOH . H 6 HOH A 391 991 266 HOH HOH . H 6 HOH A 392 992 239 HOH HOH . H 6 HOH A 393 993 353 HOH HOH . H 6 HOH A 394 994 179 HOH HOH . H 6 HOH A 395 995 360 HOH HOH . H 6 HOH A 396 996 203 HOH HOH . H 6 HOH A 397 997 417 HOH HOH . H 6 HOH A 398 998 432 HOH HOH . H 6 HOH A 399 999 158 HOH HOH . H 6 HOH A 400 1000 232 HOH HOH . H 6 HOH A 401 1001 409 HOH HOH . H 6 HOH A 402 1002 171 HOH HOH . H 6 HOH A 403 1003 342 HOH HOH . H 6 HOH A 404 1004 369 HOH HOH . H 6 HOH A 405 1005 364 HOH HOH . H 6 HOH A 406 1006 442 HOH HOH . H 6 HOH A 407 1007 63 HOH HOH . H 6 HOH A 408 1008 242 HOH HOH . H 6 HOH A 409 1009 303 HOH HOH . H 6 HOH A 410 1010 302 HOH HOH . H 6 HOH A 411 1011 410 HOH HOH . H 6 HOH A 412 1012 435 HOH HOH . H 6 HOH A 413 1013 295 HOH HOH . H 6 HOH A 414 1014 233 HOH HOH . H 6 HOH A 415 1015 431 HOH HOH . H 6 HOH A 416 1016 127 HOH HOH . H 6 HOH A 417 1017 271 HOH HOH . H 6 HOH A 418 1018 173 HOH HOH . H 6 HOH A 419 1019 215 HOH HOH . H 6 HOH A 420 1020 288 HOH HOH . H 6 HOH A 421 1021 223 HOH HOH . H 6 HOH A 422 1022 384 HOH HOH . H 6 HOH A 423 1023 174 HOH HOH . H 6 HOH A 424 1024 441 HOH HOH . H 6 HOH A 425 1025 218 HOH HOH . H 6 HOH A 426 1026 433 HOH HOH . H 6 HOH A 427 1027 326 HOH HOH . H 6 HOH A 428 1028 273 HOH HOH . H 6 HOH A 429 1029 260 HOH HOH . H 6 HOH A 430 1030 296 HOH HOH . H 6 HOH A 431 1031 287 HOH HOH . H 6 HOH A 432 1032 217 HOH HOH . H 6 HOH A 433 1033 297 HOH HOH . H 6 HOH A 434 1034 269 HOH HOH . H 6 HOH A 435 1035 355 HOH HOH . H 6 HOH A 436 1036 274 HOH HOH . H 6 HOH A 437 1037 178 HOH HOH . H 6 HOH A 438 1038 256 HOH HOH . H 6 HOH A 439 1039 228 HOH HOH . H 6 HOH A 440 1040 316 HOH HOH . H 6 HOH A 441 1041 141 HOH HOH . H 6 HOH A 442 1042 322 HOH HOH . H 6 HOH A 443 1043 324 HOH HOH . H 6 HOH A 444 1044 283 HOH HOH . H 6 HOH A 445 1045 279 HOH HOH . H 6 HOH A 446 1046 447 HOH HOH . H 6 HOH A 447 1047 437 HOH HOH . H 6 HOH A 448 1048 405 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . D 3 27.549 -9.938 -11.916 1 8.12 ? PB GDP 503 A 1 HETATM 2 O O1B GDP . . . D 3 27.327 -8.56 -12.429 1 4.79 ? O1B GDP 503 A 1 HETATM 3 O O2B GDP . . . D 3 28.348 -9.97 -10.663 1 5.42 ? O2B GDP 503 A 1 HETATM 4 O O3B GDP . . . D 3 26.286 -10.722 -11.811 1 4.58 ? O3B GDP 503 A 1 HETATM 5 O O3A GDP . . . D 3 28.446 -10.666 -13.01 1 4.72 ? O3A GDP 503 A 1 HETATM 6 P PA GDP . . . D 3 29.682 -11.667 -12.881 1 8.93 ? PA GDP 503 A 1 HETATM 7 O O1A GDP . . . D 3 30.842 -10.938 -12.312 1 12.77 ? O1A GDP 503 A 1 HETATM 8 O O2A GDP . . . D 3 29.216 -12.9 -12.207 1 13.22 ? O2A GDP 503 A 1 HETATM 9 O O5' GDP . . . D 3 29.944 -11.969 -14.418 1 11.89 ? O5' GDP 503 A 1 HETATM 10 C C5' GDP . . . D 3 28.906 -12.674 -15.132 1 8.4 ? C5' GDP 503 A 1 HETATM 11 C C4' GDP . . . D 3 29.548 -13.59 -16.138 1 14.52 ? C4' GDP 503 A 1 HETATM 12 O O4' GDP . . . D 3 30.245 -12.788 -17.123 1 8.92 ? O4' GDP 503 A 1 HETATM 13 C C3' GDP . . . D 3 30.584 -14.564 -15.56 1 14.53 ? C3' GDP 503 A 1 HETATM 14 O O3' GDP . . . D 3 30.49 -15.849 -16.154 1 15.71 ? O3' GDP 503 A 1 HETATM 15 C C2' GDP . . . D 3 31.914 -13.883 -15.888 1 12.9 ? C2' GDP 503 A 1 HETATM 16 O O2' GDP . . . D 3 32.994 -14.766 -16.074 1 13.51 ? O2' GDP 503 A 1 HETATM 17 C C1' GDP . . . D 3 31.595 -13.169 -17.194 1 4.36 ? C1' GDP 503 A 1 HETATM 18 N N9 GDP . . . D 3 32.421 -11.986 -17.37 1 5.38 ? N9 GDP 503 A 1 HETATM 19 C C8 GDP . . . D 3 32.703 -11.044 -16.417 1 5.33 ? C8 GDP 503 A 1 HETATM 20 N N7 GDP . . . D 3 33.511 -10.107 -16.838 1 5.5 ? N7 GDP 503 A 1 HETATM 21 C C5 GDP . . . D 3 33.789 -10.464 -18.148 1 3.43 ? C5 GDP 503 A 1 HETATM 22 C C6 GDP . . . D 3 34.606 -9.826 -19.11 1 6.91 ? C6 GDP 503 A 1 HETATM 23 O O6 GDP . . . D 3 35.261 -8.789 -18.983 1 3.61 ? O6 GDP 503 A 1 HETATM 24 N N1 GDP . . . D 3 34.619 -10.532 -20.312 1 9.06 ? N1 GDP 503 A 1 HETATM 25 C C2 GDP . . . D 3 33.924 -11.687 -20.563 1 11.45 ? C2 GDP 503 A 1 HETATM 26 N N2 GDP . . . D 3 34.053 -12.216 -21.786 1 15.7 ? N2 GDP 503 A 1 HETATM 27 N N3 GDP . . . D 3 33.158 -12.292 -19.662 1 12.51 ? N3 GDP 503 A 1 HETATM 28 C C4 GDP . . . D 3 33.136 -11.628 -18.485 1 8.99 ? C4 GDP 503 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #