data_8YM7
#
_model_server_result.job_id            TLGCHvQSFuHSArdjAiWrXQ 
_model_server_result.datetime_utc      '2024-10-10 17:11:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ym7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    8YM7 
#
_exptl.entry_id    8YM7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YM7 
_cell.length_a            120.674 
_cell.length_b            178.038 
_cell.length_c            234.346 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YM7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 143 n n 
PA O2A FAD sing 144 n n 
PA O5B FAD sing 145 n n 
PA O3P FAD sing 146 n n 
O2A HOA2 FAD sing 147 n n 
O5B C5B FAD sing 148 n n 
C5B C4B FAD sing 149 n n 
C5B H51A FAD sing 150 n n 
C5B H52A FAD sing 151 n n 
C4B O4B FAD sing 152 n n 
C4B C3B FAD sing 153 n n 
C4B H4B FAD sing 154 n n 
O4B C1B FAD sing 155 n n 
C3B O3B FAD sing 156 n n 
C3B C2B FAD sing 157 n n 
C3B H3B FAD sing 158 n n 
O3B HO3A FAD sing 159 n n 
C2B O2B FAD sing 160 n n 
C2B C1B FAD sing 161 n n 
C2B H2B FAD sing 162 n n 
O2B HO2A FAD sing 163 n n 
C1B N9A FAD sing 164 n n 
C1B H1B FAD sing 165 n n 
N9A C8A FAD sing 166 n y 
N9A C4A FAD sing 167 n y 
C8A N7A FAD doub 168 n y 
C8A H8A FAD sing 169 n n 
N7A C5A FAD sing 170 n y 
C5A C6A FAD sing 171 n y 
C5A C4A FAD doub 172 n y 
C6A N6A FAD sing 173 n n 
C6A N1A FAD doub 174 n y 
N6A H61A FAD sing 175 n n 
N6A H62A FAD sing 176 n n 
N1A C2A FAD sing 177 n y 
C2A N3A FAD doub 178 n y 
C2A H2A FAD sing 179 n n 
N3A C4A FAD sing 180 n y 
N1 C2 FAD sing 181 n n 
N1 C10 FAD doub 182 n n 
C2 O2 FAD doub 183 n n 
C2 N3 FAD sing 184 n n 
N3 C4 FAD sing 185 n n 
N3 HN3 FAD sing 186 n n 
C4 O4 FAD doub 187 n n 
C4 C4X FAD sing 188 n n 
C4X N5 FAD doub 189 n n 
C4X C10 FAD sing 190 n n 
N5 C5X FAD sing 191 n n 
C5X C6 FAD doub 192 n y 
C5X C9A FAD sing 193 n y 
C6 C7 FAD sing 194 n y 
C6 H6 FAD sing 195 n n 
C7 C7M FAD sing 196 n n 
C7 C8 FAD doub 197 n y 
C7M HM71 FAD sing 198 n n 
C7M HM72 FAD sing 199 n n 
C7M HM73 FAD sing 200 n n 
C8 C8M FAD sing 201 n n 
C8 C9 FAD sing 202 n y 
C8M HM81 FAD sing 203 n n 
C8M HM82 FAD sing 204 n n 
C8M HM83 FAD sing 205 n n 
C9 C9A FAD doub 206 n y 
C9 H9 FAD sing 207 n n 
C9A N10 FAD sing 208 n n 
N10 C10 FAD sing 209 n n 
N10 C1' FAD sing 210 n n 
C1' C2' FAD sing 211 n n 
C1' "H1'1" FAD sing 212 n n 
C1' "H1'2" FAD sing 213 n n 
C2' O2' FAD sing 214 n n 
C2' C3' FAD sing 215 n n 
C2' H2' FAD sing 216 n n 
O2' HO2' FAD sing 217 n n 
C3' O3' FAD sing 218 n n 
C3' C4' FAD sing 219 n n 
C3' H3' FAD sing 220 n n 
O3' HO3' FAD sing 221 n n 
C4' O4' FAD sing 222 n n 
C4' C5' FAD sing 223 n n 
C4' H4' FAD sing 224 n n 
O4' HO4' FAD sing 225 n n 
C5' O5' FAD sing 226 n n 
C5' "H5'1" FAD sing 227 n n 
C5' "H5'2" FAD sing 228 n n 
O5' P FAD sing 229 n n 
P O1P FAD doub 230 n n 
P O2P FAD sing 231 n n 
P O3P FAD sing 232 n n 
O2P HOP2 FAD sing 233 n n 
#
_atom_sites.entry_id                     8YM7 
_atom_sites.fract_transf_matrix[1][1]    0.008287 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005617 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FAD A 1 901 901 FAD FAD . 
D 4 A1LZJ A 1 902 902 A1LZJ LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 3 -67.037 -21.808 -28.657 1 46.8 ? PA FAD 901 A 1 
HETATM 2 O O1A FAD . . . C 3 -66.131 -21.381 -29.746 1 42.01 -1 O1A FAD 901 A 1 
HETATM 3 O O2A FAD . . . C 3 -68.394 -22.507 -28.939 1 47.93 ? O2A FAD 901 A 1 
HETATM 4 O O5B FAD . . . C 3 -67.382 -20.5 -27.816 1 49.94 ? O5B FAD 901 A 1 
HETATM 5 C C5B FAD . . . C 3 -66.426 -19.428 -27.674 1 43.84 ? C5B FAD 901 A 1 
HETATM 6 C C4B FAD . . . C 3 -67.16 -18.143 -27.901 1 42.08 ? C4B FAD 901 A 1 
HETATM 7 O O4B FAD . . . C 3 -66.262 -17.046 -27.64 1 45.22 ? O4B FAD 901 A 1 
HETATM 8 C C3B FAD . . . C 3 -67.69 -17.939 -29.321 1 45.63 ? C3B FAD 901 A 1 
HETATM 9 O O3B FAD . . . C 3 -69.045 -17.504 -29.326 1 46.95 ? O3B FAD 901 A 1 
HETATM 10 C C2B FAD . . . C 3 -66.78 -16.843 -29.88 1 48.25 ? C2B FAD 901 A 1 
HETATM 11 O O2B FAD . . . C 3 -67.445 -16.039 -30.846 1 47.91 ? O2B FAD 901 A 1 
HETATM 12 C C1B FAD . . . C 3 -66.507 -16.058 -28.61 1 48.46 ? C1B FAD 901 A 1 
HETATM 13 N N9A FAD . . . C 3 -65.372 -15.143 -28.669 1 45.5 ? N9A FAD 901 A 1 
HETATM 14 C C8A FAD . . . C 3 -64.18 -15.308 -29.324 1 46.43 ? C8A FAD 901 A 1 
HETATM 15 N N7A FAD . . . C 3 -63.35 -14.298 -29.19 1 45.68 ? N7A FAD 901 A 1 
HETATM 16 C C5A FAD . . . C 3 -64.053 -13.403 -28.397 1 47.51 ? C5A FAD 901 A 1 
HETATM 17 C C6A FAD . . . C 3 -63.733 -12.126 -27.887 1 47.06 ? C6A FAD 901 A 1 
HETATM 18 N N6A FAD . . . C 3 -62.576 -11.501 -28.117 1 42.2 ? N6A FAD 901 A 1 
HETATM 19 N N1A FAD . . . C 3 -64.661 -11.508 -27.119 1 47.21 ? N1A FAD 901 A 1 
HETATM 20 C C2A FAD . . . C 3 -65.828 -12.122 -26.89 1 45.98 ? C2A FAD 901 A 1 
HETATM 21 N N3A FAD . . . C 3 -66.242 -13.315 -27.32 1 46.83 ? N3A FAD 901 A 1 
HETATM 22 C C4A FAD . . . C 3 -65.3 -13.912 -28.067 1 45.64 ? C4A FAD 901 A 1 
HETATM 23 N N1 FAD . . . C 3 -68.503 -31.352 -31.649 1 54.04 ? N1 FAD 901 A 1 
HETATM 24 C C2 FAD . . . C 3 -69.313 -32.458 -31.561 1 56.19 ? C2 FAD 901 A 1 
HETATM 25 O O2 FAD . . . C 3 -69.605 -33.007 -30.49 1 53.87 ? O2 FAD 901 A 1 
HETATM 26 N N3 FAD . . . C 3 -69.851 -32.991 -32.713 1 58.41 ? N3 FAD 901 A 1 
HETATM 27 C C4 FAD . . . C 3 -69.677 -32.504 -33.998 1 53.77 ? C4 FAD 901 A 1 
HETATM 28 O O4 FAD . . . C 3 -70.215 -33.033 -34.963 1 55.62 ? O4 FAD 901 A 1 
HETATM 29 C C4X FAD . . . C 3 -68.829 -31.358 -34.097 1 54.63 ? C4X FAD 901 A 1 
HETATM 30 N N5 FAD . . . C 3 -68.622 -30.875 -35.272 1 54.71 ? N5 FAD 901 A 1 
HETATM 31 C C5X FAD . . . C 3 -67.829 -29.752 -35.385 1 59.28 ? C5X FAD 901 A 1 
HETATM 32 C C6 FAD . . . C 3 -67.624 -29.22 -36.655 1 57.57 ? C6 FAD 901 A 1 
HETATM 33 C C7 FAD . . . C 3 -66.839 -28.092 -36.839 1 62 ? C7 FAD 901 A 1 
HETATM 34 C C7M FAD . . . C 3 -66.638 -27.562 -38.234 1 53.78 ? C7M FAD 901 A 1 
HETATM 35 C C8 FAD . . . C 3 -66.247 -27.465 -35.724 1 65.86 ? C8 FAD 901 A 1 
HETATM 36 C C8M FAD . . . C 3 -65.379 -26.234 -35.895 1 48.53 ? C8M FAD 901 A 1 
HETATM 37 C C9 FAD . . . C 3 -66.458 -27.992 -34.445 1 60.33 ? C9 FAD 901 A 1 
HETATM 38 C C9A FAD . . . C 3 -67.241 -29.129 -34.268 1 60.17 ? C9A FAD 901 A 1 
HETATM 39 N N10 FAD . . . C 3 -67.481 -29.7 -32.995 1 58.54 ? N10 FAD 901 A 1 
HETATM 40 C C10 FAD . . . C 3 -68.284 -30.828 -32.874 1 56.83 ? C10 FAD 901 A 1 
HETATM 41 C C1' FAD . . . C 3 -66.879 -29.129 -31.786 1 49.87 ? C1' FAD 901 A 1 
HETATM 42 C C2' FAD . . . C 3 -67.838 -28.251 -31.013 1 49.15 ? C2' FAD 901 A 1 
HETATM 43 O O2' FAD . . . C 3 -68.485 -27.422 -31.976 1 55.45 ? O2' FAD 901 A 1 
HETATM 44 C C3' FAD . . . C 3 -67.043 -27.375 -30.047 1 48.96 ? C3' FAD 901 A 1 
HETATM 45 O O3' FAD . . . C 3 -66.121 -28.129 -29.273 1 47.56 ? O3' FAD 901 A 1 
HETATM 46 C C4' FAD . . . C 3 -67.873 -26.536 -29.086 1 47.46 ? C4' FAD 901 A 1 
HETATM 47 O O4' FAD . . . C 3 -69.101 -26.168 -29.711 1 51.78 ? O4' FAD 901 A 1 
HETATM 48 C C5' FAD . . . C 3 -67.108 -25.285 -28.719 1 50.43 ? C5' FAD 901 A 1 
HETATM 49 O O5' FAD . . . C 3 -67.523 -24.848 -27.415 1 49.1 ? O5' FAD 901 A 1 
HETATM 50 P P FAD . . . C 3 -66.676 -23.812 -26.598 1 46.36 ? P FAD 901 A 1 
HETATM 51 O O1P FAD . . . C 3 -67.86 -23.336 -25.742 1 49.25 -1 O1P FAD 901 A 1 
HETATM 52 O O2P FAD . . . C 3 -65.49 -24.354 -25.945 1 47.7 ? O2P FAD 901 A 1 
HETATM 53 O O3P FAD . . . C 3 -66.225 -22.704 -27.632 1 44.58 ? O3P FAD 901 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           53 
#