data_8YN1
#
_model_server_result.job_id            9XBTkOi5CdWZrL07riMu4w 
_model_server_result.datetime_utc      '2025-03-04 19:07:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yn1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    8YN1 
#
_exptl.entry_id    8YN1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YN1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YN1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            C1D 
_struct_conn.ptnr1_label_comp_id            APR 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             APR 
_struct_conn.ptnr1_auth_seq_id              701 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            O2' 
_struct_conn.ptnr2_label_comp_id            ATP 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             ATP 
_struct_conn.ptnr2_auth_seq_id              601 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.373 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 132 n n 
PG O2G ATP sing 133 n n 
PG O3G ATP sing 134 n n 
PG O3B ATP sing 135 n n 
O2G HOG2 ATP sing 136 n n 
O3G HOG3 ATP sing 137 n n 
PB O1B ATP doub 138 n n 
PB O2B ATP sing 139 n n 
PB O3B ATP sing 140 n n 
PB O3A ATP sing 141 n n 
O2B HOB2 ATP sing 142 n n 
PA O1A ATP doub 143 n n 
PA O2A ATP sing 144 n n 
PA O3A ATP sing 145 n n 
PA O5' ATP sing 146 n n 
O2A HOA2 ATP sing 147 n n 
O5' C5' ATP sing 148 n n 
C5' C4' ATP sing 149 n n 
C5' "H5'1" ATP sing 150 n n 
C5' "H5'2" ATP sing 151 n n 
C4' O4' ATP sing 152 n n 
C4' C3' ATP sing 153 n n 
C4' H4' ATP sing 154 n n 
O4' C1' ATP sing 155 n n 
C3' O3' ATP sing 156 n n 
C3' C2' ATP sing 157 n n 
C3' H3' ATP sing 158 n n 
O3' HO3' ATP sing 159 n n 
C2' O2' ATP sing 160 n n 
C2' C1' ATP sing 161 n n 
C2' H2' ATP sing 162 n n 
O2' HO2' ATP sing 163 n n 
C1' N9 ATP sing 164 n n 
C1' H1' ATP sing 165 n n 
N9 C8 ATP sing 166 n y 
N9 C4 ATP sing 167 n y 
C8 N7 ATP doub 168 n y 
C8 H8 ATP sing 169 n n 
N7 C5 ATP sing 170 n y 
C5 C6 ATP sing 171 n y 
C5 C4 ATP doub 172 n y 
C6 N6 ATP sing 173 n n 
C6 N1 ATP doub 174 n y 
N6 HN61 ATP sing 175 n n 
N6 HN62 ATP sing 176 n n 
N1 C2 ATP sing 177 n y 
C2 N3 ATP doub 178 n y 
C2 H2 ATP sing 179 n n 
N3 C4 ATP sing 180 n y 
#
_atom_sites.entry_id                     8YN1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 APR A 1 701 702 APR APR . 
E 5 ATP B 1 601 601 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . E 5 102.525 101.905 92.074 1 14.8 ? PG ATP 601 B 1 
HETATM 2 O O1G ATP . . . E 5 101.529 102.904 91.577 1 14.8 ? O1G ATP 601 B 1 
HETATM 3 O O2G ATP . . . E 5 103.898 102.058 91.505 1 14.8 ? O2G ATP 601 B 1 
HETATM 4 O O3G ATP . . . E 5 102.051 100.486 92.068 1 14.8 ? O3G ATP 601 B 1 
HETATM 5 P PB ATP . . . E 5 101.561 102.642 94.642 1 14.8 ? PB ATP 601 B 1 
HETATM 6 O O1B ATP . . . E 5 100.209 102.459 94.016 1 14.8 ? O1B ATP 601 B 1 
HETATM 7 O O2B ATP . . . E 5 101.897 101.929 95.91 1 14.8 ? O2B ATP 601 B 1 
HETATM 8 O O3B ATP . . . E 5 102.739 102.291 93.614 1 14.8 ? O3B ATP 601 B 1 
HETATM 9 P PA ATP . . . E 5 100.641 105.222 95.264 1 14.8 ? PA ATP 601 B 1 
HETATM 10 O O1A ATP . . . E 5 99.74 105.399 94.099 1 14.8 ? O1A ATP 601 B 1 
HETATM 11 O O2A ATP . . . E 5 100.075 104.8 96.571 1 14.8 ? O2A ATP 601 B 1 
HETATM 12 O O3A ATP . . . E 5 101.8 104.213 94.848 1 14.8 ? O3A ATP 601 B 1 
HETATM 13 O O5' ATP . . . E 5 101.461 106.562 95.506 1 14.8 ? O5' ATP 601 B 1 
HETATM 14 C C5' ATP . . . E 5 102.862 106.489 95.675 1 14.8 ? C5' ATP 601 B 1 
HETATM 15 C C4' ATP . . . E 5 103.293 107.111 96.984 1 14.8 ? C4' ATP 601 B 1 
HETATM 16 O O4' ATP . . . E 5 104.699 107.282 96.919 1 14.8 ? O4' ATP 601 B 1 
HETATM 17 C C3' ATP . . . E 5 102.688 108.477 97.222 1 14.8 ? C3' ATP 601 B 1 
HETATM 18 O O3' ATP . . . E 5 102.137 108.556 98.526 1 14.8 ? O3' ATP 601 B 1 
HETATM 19 C C2' ATP . . . E 5 103.841 109.428 97.211 1 14.8 ? C2' ATP 601 B 1 
HETATM 20 O O2' ATP . . . E 5 103.632 110.481 98.152 1 14.8 ? O2' ATP 601 B 1 
HETATM 21 C C1' ATP . . . E 5 105.005 108.513 97.546 1 14.8 ? C1' ATP 601 B 1 
HETATM 22 N N9 ATP . . . E 5 106.285 109.097 97.097 1 14.8 ? N9 ATP 601 B 1 
HETATM 23 C C8 ATP . . . E 5 106.581 109.527 95.878 1 14.8 ? C8 ATP 601 B 1 
HETATM 24 N N7 ATP . . . E 5 107.824 110.027 95.843 1 14.8 ? N7 ATP 601 B 1 
HETATM 25 C C5 ATP . . . E 5 108.335 109.933 97.069 1 14.8 ? C5 ATP 601 B 1 
HETATM 26 C C6 ATP . . . E 5 109.595 110.283 97.724 1 14.8 ? C6 ATP 601 B 1 
HETATM 27 N N6 ATP . . . E 5 110.601 110.84 97.036 1 14.8 ? N6 ATP 601 B 1 
HETATM 28 N N1 ATP . . . E 5 109.71 110.018 99.025 1 14.8 ? N1 ATP 601 B 1 
HETATM 29 C C2 ATP . . . E 5 108.734 109.456 99.735 1 14.8 ? C2 ATP 601 B 1 
HETATM 30 N N3 ATP . . . E 5 107.568 109.108 99.205 1 14.8 ? N3 ATP 601 B 1 
HETATM 31 C C4 ATP . . . E 5 107.313 109.328 97.898 1 14.8 ? C4 ATP 601 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#