data_8YN6
#
_model_server_result.job_id            WDOT9hpg6YDqRUNJDV6BXA 
_model_server_result.datetime_utc      '2024-12-22 07:19:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yn6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    8YN6 
#
_exptl.entry_id    8YN6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              170.235 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(1~{H}-imidazol-5-yl)ethyl carbamimidothioate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YN6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YN6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 D SG CYS 159 E CYS 159 1_555 D SG CYS 229 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 E SG CYS 160 R CYS 107 1_555 E SG CYS 241 R CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 E SG CYS 437 R CYS 384 1_555 E SG CYS 441 R CYS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C6 H10 N4 S' 
_chem_comp.formula_weight    170.235 
_chem_comp.id                ITF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(1~{H}-imidazol-5-yl)ethyl carbamimidothioate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C04 N03 ITF sing 248 n y 
C04 N05 ITF doub 249 n y 
N03 C02 ITF sing 250 n y 
N10 C09 ITF doub 251 n n 
N05 C01 ITF sing 252 n y 
C02 C06 ITF sing 253 n n 
C02 C01 ITF doub 254 n y 
C06 C07 ITF sing 255 n n 
C09 N11 ITF sing 256 n n 
C09 S08 ITF sing 257 n n 
C07 S08 ITF sing 258 n n 
C01 H1 ITF sing 259 n n 
C04 H2 ITF sing 260 n n 
C06 H3 ITF sing 261 n n 
C06 H4 ITF sing 262 n n 
C07 H5 ITF sing 263 n n 
C07 H6 ITF sing 264 n n 
N03 H7 ITF sing 265 n n 
N10 H9 ITF sing 266 n n 
N11 H10 ITF sing 267 n n 
N11 H11 ITF sing 268 n n 
#
_atom_sites.entry_id                     8YN6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 ITF R 1 701 701 ITF LIG . 
G 7 CLR R 1 702 801 CLR CLR . 
H 7 CLR R 1 703 802 CLR CLR . 
I 7 CLR R 1 704 803 CLR CLR . 
J 7 CLR R 1 705 804 CLR CLR . 
K 7 CLR R 1 706 805 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 ITF . . . F 6 85.294 125.564 116.339 1 91.22 ? C01 ITF 701 R 1 
HETATM 2 C C02 ITF . . . F 6 86.052 124.669 117.073 1 90.78 ? C02 ITF 701 R 1 
HETATM 3 C C04 ITF . . . F 6 84.192 123.74 116.51 1 91.12 ? C04 ITF 701 R 1 
HETATM 4 C C06 ITF . . . F 6 87.457 124.924 117.66 1 90.35 ? C06 ITF 701 R 1 
HETATM 5 C C07 ITF . . . F 6 88.525 124.707 116.571 1 92.02 ? C07 ITF 701 R 1 
HETATM 6 C C09 ITF . . . F 6 89.989 127.286 116.722 1 92.97 ? C09 ITF 701 R 1 
HETATM 7 N N03 ITF . . . F 6 85.349 123.568 117.151 1 90.64 ? N03 ITF 701 R 1 
HETATM 8 N N05 ITF . . . F 6 84.166 124.952 116.01 1 92.85 ? N05 ITF 701 R 1 
HETATM 9 N N10 ITF . . . F 6 90.138 127.695 115.545 1 91.69 ? N10 ITF 701 R 1 
HETATM 10 N N11 ITF . . . F 6 89.76 128.236 117.826 1 90.42 ? N11 ITF 701 R 1 
HETATM 11 S S08 ITF . . . F 6 90.076 125.503 117.003 1 95.03 ? S08 ITF 701 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#