data_8YNR
#
_model_server_result.job_id            2y1ItUTG0Y7q5yta77u40Q 
_model_server_result.datetime_utc      '2024-12-12 16:32:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ynr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    8YNR 
#
_exptl.entry_id    8YNR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YNR 
_cell.length_a            38.677 
_cell.length_b            61.333 
_cell.length_c            70.601 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YNR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 23 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc2 A OG1 THR 36 A THR 41 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc3 B O2G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc4 B O1B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc5 C MG MG . A MG 202 1_555 D O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc6 C MG MG . A MG 202 1_555 D O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8YNR 
_atom_sites.fract_transf_matrix[1][1]    0.025855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 201 201 GNP GNP . 
C 3 MG A 1 202 1 MG MG . 
D 4 HOH A 1 301 94 HOH HOH . 
D 4 HOH A 2 302 108 HOH HOH . 
D 4 HOH A 3 303 76 HOH HOH . 
D 4 HOH A 4 304 109 HOH HOH . 
D 4 HOH A 5 305 59 HOH HOH . 
D 4 HOH A 6 306 75 HOH HOH . 
D 4 HOH A 7 307 35 HOH HOH . 
D 4 HOH A 8 308 47 HOH HOH . 
D 4 HOH A 9 309 84 HOH HOH . 
D 4 HOH A 10 310 38 HOH HOH . 
D 4 HOH A 11 311 15 HOH HOH . 
D 4 HOH A 12 312 3 HOH HOH . 
D 4 HOH A 13 313 25 HOH HOH . 
D 4 HOH A 14 314 91 HOH HOH . 
D 4 HOH A 15 315 95 HOH HOH . 
D 4 HOH A 16 316 21 HOH HOH . 
D 4 HOH A 17 317 23 HOH HOH . 
D 4 HOH A 18 318 37 HOH HOH . 
D 4 HOH A 19 319 9 HOH HOH . 
D 4 HOH A 20 320 7 HOH HOH . 
D 4 HOH A 21 321 13 HOH HOH . 
D 4 HOH A 22 322 12 HOH HOH . 
D 4 HOH A 23 323 103 HOH HOH . 
D 4 HOH A 24 324 120 HOH HOH . 
D 4 HOH A 25 325 1 HOH HOH . 
D 4 HOH A 26 326 18 HOH HOH . 
D 4 HOH A 27 327 45 HOH HOH . 
D 4 HOH A 28 328 24 HOH HOH . 
D 4 HOH A 29 329 2 HOH HOH . 
D 4 HOH A 30 330 90 HOH HOH . 
D 4 HOH A 31 331 29 HOH HOH . 
D 4 HOH A 32 332 41 HOH HOH . 
D 4 HOH A 33 333 5 HOH HOH . 
D 4 HOH A 34 334 83 HOH HOH . 
D 4 HOH A 35 335 8 HOH HOH . 
D 4 HOH A 36 336 14 HOH HOH . 
D 4 HOH A 37 337 57 HOH HOH . 
D 4 HOH A 38 338 88 HOH HOH . 
D 4 HOH A 39 339 68 HOH HOH . 
D 4 HOH A 40 340 46 HOH HOH . 
D 4 HOH A 41 341 4 HOH HOH . 
D 4 HOH A 42 342 32 HOH HOH . 
D 4 HOH A 43 343 60 HOH HOH . 
D 4 HOH A 44 344 48 HOH HOH . 
D 4 HOH A 45 345 16 HOH HOH . 
D 4 HOH A 46 346 36 HOH HOH . 
D 4 HOH A 47 347 92 HOH HOH . 
D 4 HOH A 48 348 89 HOH HOH . 
D 4 HOH A 49 349 111 HOH HOH . 
D 4 HOH A 50 350 26 HOH HOH . 
D 4 HOH A 51 351 11 HOH HOH . 
D 4 HOH A 52 352 69 HOH HOH . 
D 4 HOH A 53 353 28 HOH HOH . 
D 4 HOH A 54 354 74 HOH HOH . 
D 4 HOH A 55 355 10 HOH HOH . 
D 4 HOH A 56 356 33 HOH HOH . 
D 4 HOH A 57 357 53 HOH HOH . 
D 4 HOH A 58 358 50 HOH HOH . 
D 4 HOH A 59 359 107 HOH HOH . 
D 4 HOH A 60 360 22 HOH HOH . 
D 4 HOH A 61 361 17 HOH HOH . 
D 4 HOH A 62 362 123 HOH HOH . 
D 4 HOH A 63 363 49 HOH HOH . 
D 4 HOH A 64 364 20 HOH HOH . 
D 4 HOH A 65 365 110 HOH HOH . 
D 4 HOH A 66 366 102 HOH HOH . 
D 4 HOH A 67 367 43 HOH HOH . 
D 4 HOH A 68 368 67 HOH HOH . 
D 4 HOH A 69 369 54 HOH HOH . 
D 4 HOH A 70 370 62 HOH HOH . 
D 4 HOH A 71 371 114 HOH HOH . 
D 4 HOH A 72 372 19 HOH HOH . 
D 4 HOH A 73 373 27 HOH HOH . 
D 4 HOH A 74 374 6 HOH HOH . 
D 4 HOH A 75 375 81 HOH HOH . 
D 4 HOH A 76 376 44 HOH HOH . 
D 4 HOH A 77 377 100 HOH HOH . 
D 4 HOH A 78 378 64 HOH HOH . 
D 4 HOH A 79 379 116 HOH HOH . 
D 4 HOH A 80 380 99 HOH HOH . 
D 4 HOH A 81 381 66 HOH HOH . 
D 4 HOH A 82 382 85 HOH HOH . 
D 4 HOH A 83 383 30 HOH HOH . 
D 4 HOH A 84 384 55 HOH HOH . 
D 4 HOH A 85 385 121 HOH HOH . 
D 4 HOH A 86 386 122 HOH HOH . 
D 4 HOH A 87 387 105 HOH HOH . 
D 4 HOH A 88 388 71 HOH HOH . 
D 4 HOH A 89 389 93 HOH HOH . 
D 4 HOH A 90 390 39 HOH HOH . 
D 4 HOH A 91 391 106 HOH HOH . 
D 4 HOH A 92 392 40 HOH HOH . 
D 4 HOH A 93 393 51 HOH HOH . 
D 4 HOH A 94 394 77 HOH HOH . 
D 4 HOH A 95 395 52 HOH HOH . 
D 4 HOH A 96 396 78 HOH HOH . 
D 4 HOH A 97 397 42 HOH HOH . 
D 4 HOH A 98 398 61 HOH HOH . 
D 4 HOH A 99 399 104 HOH HOH . 
D 4 HOH A 100 400 82 HOH HOH . 
D 4 HOH A 101 401 34 HOH HOH . 
D 4 HOH A 102 402 63 HOH HOH . 
D 4 HOH A 103 403 72 HOH HOH . 
D 4 HOH A 104 404 70 HOH HOH . 
D 4 HOH A 105 405 118 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -2.962 
_atom_site.Cartn_y               -16.005 
_atom_site.Cartn_z               11.138 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.13 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           1 
#