data_8YNT
#
_model_server_result.job_id            -XkBPdaFVbyYutn5q0ucjw 
_model_server_result.datetime_utc      '2024-12-22 07:54:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ynt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    8YNT 
#
_exptl.entry_id    8YNT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              478.573 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[3-[1-[[4-[3,4-bis(fluoranyl)phenoxy]phenyl]methyl]piperidin-4-yl]-4-methyl-phenyl]-2-methyl-propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YNT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YNT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 H CYS 25 1_555 A SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 152 H CYS 152 1_555 A SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 23 L CYS 24 1_555 B SG CYS 88 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 B SG CYS 137 L CYS 138 1_555 B SG CYS 197 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 D SG CYS 231 R CYS 185 1_555 D SG CYS 309 R CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C29 H32 F2 N2 O2' 
_chem_comp.formula_weight    478.573 
_chem_comp.id                A1D6T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[3-[1-[[4-[3,4-bis(fluoranyl)phenoxy]phenyl]methyl]piperidin-4-yl]-4-methyl-phenyl]-2-methyl-propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SNAP-94847 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C26 C25 A1D6T doub 1 n y 
C26 C21 A1D6T sing 2 n y 
C25 C24 A1D6T sing 3 n y 
C20 C21 A1D6T sing 4 n n 
C20 N17 A1D6T sing 5 n n 
C21 C22 A1D6T doub 6 n y 
C24 O27 A1D6T sing 7 n n 
C24 C23 A1D6T doub 8 n y 
O27 C28 A1D6T sing 9 n n 
N17 C18 A1D6T sing 10 n n 
N17 C16 A1D6T sing 11 n n 
C18 C19 A1D6T sing 12 n n 
C22 C23 A1D6T sing 13 n y 
C16 C15 A1D6T sing 14 n n 
C28 C33 A1D6T doub 15 n y 
C28 C29 A1D6T sing 16 n y 
C01 C02 A1D6T sing 17 n n 
C19 C14 A1D6T sing 18 n n 
C14 C15 A1D6T sing 19 n n 
C14 C03 A1D6T sing 20 n n 
C33 C32 A1D6T sing 21 n y 
C29 C30 A1D6T doub 22 n y 
C02 C03 A1D6T doub 23 n y 
C02 C07 A1D6T sing 24 n y 
C03 C04 A1D6T sing 25 n y 
C32 C31 A1D6T doub 26 n y 
C30 C31 A1D6T sing 27 n y 
C30 F35 A1D6T sing 28 n n 
C07 C06 A1D6T doub 29 n y 
C31 F34 A1D6T sing 30 n n 
C04 C05 A1D6T doub 31 n y 
C06 C05 A1D6T sing 32 n y 
C05 N08 A1D6T sing 33 n n 
N08 C09 A1D6T sing 34 n n 
O10 C09 A1D6T doub 35 n n 
C09 C11 A1D6T sing 36 n n 
C11 C13 A1D6T sing 37 n n 
C11 C12 A1D6T sing 38 n n 
C13 H1 A1D6T sing 39 n n 
C13 H2 A1D6T sing 40 n n 
C13 H3 A1D6T sing 41 n n 
C15 H4 A1D6T sing 42 n n 
C15 H5 A1D6T sing 43 n n 
C20 H6 A1D6T sing 44 n n 
C20 H7 A1D6T sing 45 n n 
C22 H8 A1D6T sing 46 n n 
C26 H9 A1D6T sing 47 n n 
C01 H10 A1D6T sing 48 n n 
C01 H11 A1D6T sing 49 n n 
C01 H12 A1D6T sing 50 n n 
C04 H13 A1D6T sing 51 n n 
C06 H14 A1D6T sing 52 n n 
C07 H15 A1D6T sing 53 n n 
C11 H16 A1D6T sing 54 n n 
C12 H17 A1D6T sing 55 n n 
C12 H18 A1D6T sing 56 n n 
C12 H19 A1D6T sing 57 n n 
C14 H20 A1D6T sing 58 n n 
C16 H21 A1D6T sing 59 n n 
C16 H22 A1D6T sing 60 n n 
C18 H23 A1D6T sing 61 n n 
C18 H24 A1D6T sing 62 n n 
C19 H25 A1D6T sing 63 n n 
C19 H26 A1D6T sing 64 n n 
C23 H27 A1D6T sing 65 n n 
C25 H28 A1D6T sing 66 n n 
C29 H29 A1D6T sing 67 n n 
C32 H30 A1D6T sing 68 n n 
C33 H31 A1D6T sing 69 n n 
N08 H32 A1D6T sing 70 n n 
#
_atom_sites.entry_id                     8YNT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          E 
_pdbx_nonpoly_scheme.entity_id        5 
_pdbx_nonpoly_scheme.mon_id           A1D6T 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     601 
_pdbx_nonpoly_scheme.pdb_mon_id       A1D6T 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 A1D6T . . . E 5 135.882 142.415 110.351 1 106.35 ? C13 A1D6T 601 R 1 
HETATM 2 C C15 A1D6T . . . E 5 137.37 142.915 101.731 1 105.88 ? C15 A1D6T 601 R 1 
HETATM 3 C C20 A1D6T . . . E 5 136.312 145.443 99.475 1 106.44 ? C20 A1D6T 601 R 1 
HETATM 4 C C21 A1D6T . . . E 5 135.82 146.927 99.723 1 106.67 ? C21 A1D6T 601 R 1 
HETATM 5 C C22 A1D6T . . . E 5 136.622 147.818 100.453 1 106.35 ? C22 A1D6T 601 R 1 
HETATM 6 C C24 A1D6T . . . E 5 134.935 149.559 100.156 1 106.29 ? C24 A1D6T 601 R 1 
HETATM 7 C C26 A1D6T . . . E 5 134.582 147.353 99.211 1 106.31 ? C26 A1D6T 601 R 1 
HETATM 8 C C28 A1D6T . . . E 5 134.567 151.204 101.774 1 106.35 ? C28 A1D6T 601 R 1 
HETATM 9 C C01 A1D6T . . . E 5 134.387 139.884 101.729 1 106.33 ? C01 A1D6T 601 R 1 
HETATM 10 C C02 A1D6T . . . E 5 135.089 140.23 103.057 1 105.92 ? C02 A1D6T 601 R 1 
HETATM 11 C C03 A1D6T . . . E 5 135.878 141.395 103.163 1 105.93 ? C03 A1D6T 601 R 1 
HETATM 12 C C04 A1D6T . . . E 5 136.511 141.7 104.372 1 105.78 ? C04 A1D6T 601 R 1 
HETATM 13 C C05 A1D6T . . . E 5 136.356 140.844 105.477 1 105.61 ? C05 A1D6T 601 R 1 
HETATM 14 C C06 A1D6T . . . E 5 135.571 139.689 105.37 1 105.7 ? C06 A1D6T 601 R 1 
HETATM 15 C C07 A1D6T . . . E 5 134.94 139.381 104.16 1 105.6 ? C07 A1D6T 601 R 1 
HETATM 16 C C09 A1D6T . . . E 5 136.204 141.615 107.954 1 105.54 ? C09 A1D6T 601 R 1 
HETATM 17 C C11 A1D6T . . . E 5 136.906 141.926 109.287 1 105.7 ? C11 A1D6T 601 R 1 
HETATM 18 C C12 A1D6T . . . E 5 137.641 140.714 109.786 1 105.78 ? C12 A1D6T 601 R 1 
HETATM 19 C C14 A1D6T . . . E 5 136.043 142.358 101.902 1 106.08 ? C14 A1D6T 601 R 1 
HETATM 20 C C16 A1D6T . . . E 5 137.402 143.837 100.501 1 105.99 ? C16 A1D6T 601 R 1 
HETATM 21 C C18 A1D6T . . . E 5 135.045 144.321 100.838 1 106.36 ? C18 A1D6T 601 R 1 
HETATM 22 C C19 A1D6T . . . E 5 135.073 143.418 102.089 1 106.35 ? C19 A1D6T 601 R 1 
HETATM 23 C C23 A1D6T . . . E 5 136.188 149.128 100.672 1 106.05 ? C23 A1D6T 601 R 1 
HETATM 24 C C25 A1D6T . . . E 5 134.142 148.677 99.433 1 106.33 ? C25 A1D6T 601 R 1 
HETATM 25 C C29 A1D6T . . . E 5 133.753 150.566 102.659 1 106.2 ? C29 A1D6T 601 R 1 
HETATM 26 C C30 A1D6T . . . E 5 133.833 150.87 104.025 1 106.58 ? C30 A1D6T 601 R 1 
HETATM 27 C C31 A1D6T . . . E 5 134.724 151.809 104.468 1 106.99 ? C31 A1D6T 601 R 1 
HETATM 28 C C32 A1D6T . . . E 5 135.543 152.457 103.571 1 106.66 ? C32 A1D6T 601 R 1 
HETATM 29 C C33 A1D6T . . . E 5 135.466 152.156 102.222 1 106.43 ? C33 A1D6T 601 R 1 
HETATM 30 F F34 A1D6T . . . E 5 134.797 152.103 105.797 1 107.58 ? F34 A1D6T 601 R 1 
HETATM 31 F F35 A1D6T . . . E 5 133.018 150.229 104.925 1 106.6 ? F35 A1D6T 601 R 1 
HETATM 32 N N08 A1D6T . . . E 5 137.022 141.153 106.762 1 105.43 ? N08 A1D6T 601 R 1 
HETATM 33 N N17 A1D6T . . . E 5 136.349 144.848 100.53 1 106.3 ? N17 A1D6T 601 R 1 
HETATM 34 O O10 A1D6T . . . E 5 135.035 141.731 107.86 1 105.86 ? O10 A1D6T 601 R 1 
HETATM 35 O O27 A1D6T . . . E 5 134.489 150.899 100.379 1 106.45 ? O27 A1D6T 601 R 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           35 
#