data_8YO1 # _model_server_result.job_id M4PL1oC69Dmh32W16ewcGA _model_server_result.datetime_utc '2024-10-10 11:26:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yo1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8YO1 # _exptl.entry_id 8YO1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YO1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O1G _struct_conn.ptnr1_label_comp_id ANP _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id ANP _struct_conn.ptnr1_auth_seq_id 701 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 702 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.918 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8YO1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP C 1 701 401 ANP ANP . D 3 MG C 1 702 1 MG MG . E 2 ANP D 1 701 401 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 102.209 95.524 113.836 1 64.11 ? PG ANP 701 C 1 HETATM 2 O O1G ANP . . . C 2 102.836 96.853 114.137 1 76.02 ? O1G ANP 701 C 1 HETATM 3 O O2G ANP . . . C 2 100.845 95.545 113.223 1 75.64 ? O2G ANP 701 C 1 HETATM 4 O O3G ANP . . . C 2 103.127 94.616 113.127 1 68.59 ? O3G ANP 701 C 1 HETATM 5 P PB ANP . . . C 2 101.816 93.046 115.541 1 78.1 ? PB ANP 701 C 1 HETATM 6 O O1B ANP . . . C 2 101.727 92.707 116.983 1 78.19 ? O1B ANP 701 C 1 HETATM 7 O O2B ANP . . . C 2 100.625 92.672 114.733 1 81.77 ? O2B ANP 701 C 1 HETATM 8 N N3B ANP . . . C 2 101.97 94.774 115.387 1 71.33 ? N3B ANP 701 C 1 HETATM 9 P PA ANP . . . C 2 104.4 91.927 115.859 1 77.64 ? PA ANP 701 C 1 HETATM 10 O O1A ANP . . . C 2 105.493 91.328 115.049 1 70.61 ? O1A ANP 701 C 1 HETATM 11 O O2A ANP . . . C 2 104.787 93.052 116.742 1 74.73 ? O2A ANP 701 C 1 HETATM 12 O O3A ANP . . . C 2 103.139 92.339 114.953 1 78.11 ? O3A ANP 701 C 1 HETATM 13 O O5' ANP . . . C 2 103.803 90.791 116.791 1 77.43 ? O5' ANP 701 C 1 HETATM 14 C C5' ANP . . . C 2 104.098 90.864 118.174 1 79.56 ? C5' ANP 701 C 1 HETATM 15 C C4' ANP . . . C 2 103.189 89.964 118.988 1 77.96 ? C4' ANP 701 C 1 HETATM 16 O O4' ANP . . . C 2 103.804 89.883 120.257 1 71.58 ? O4' ANP 701 C 1 HETATM 17 C C3' ANP . . . C 2 101.787 90.499 119.2 1 76.32 ? C3' ANP 701 C 1 HETATM 18 O O3' ANP . . . C 2 100.834 89.505 118.837 1 77.08 ? O3' ANP 701 C 1 HETATM 19 C C2' ANP . . . C 2 101.67 90.82 120.662 1 76.49 ? C2' ANP 701 C 1 HETATM 20 O O2' ANP . . . C 2 100.571 90.135 121.227 1 75.24 ? O2' ANP 701 C 1 HETATM 21 C C1' ANP . . . C 2 102.915 90.266 121.302 1 76.89 ? C1' ANP 701 C 1 HETATM 22 N N9 ANP . . . C 2 103.646 91.219 122.179 1 81.35 ? N9 ANP 701 C 1 HETATM 23 C C8 ANP . . . C 2 104.738 91.932 121.853 1 80.76 ? C8 ANP 701 C 1 HETATM 24 N N7 ANP . . . C 2 105.166 92.674 122.9 1 80.42 ? N7 ANP 701 C 1 HETATM 25 C C5 ANP . . . C 2 104.342 92.418 123.92 1 77.51 ? C5 ANP 701 C 1 HETATM 26 C C6 ANP . . . C 2 104.221 92.851 125.314 1 72.98 ? C6 ANP 701 C 1 HETATM 27 N N6 ANP . . . C 2 105.099 93.735 125.816 1 75.01 ? N6 ANP 701 C 1 HETATM 28 N N1 ANP . . . C 2 103.223 92.352 126.059 1 71.96 ? N1 ANP 701 C 1 HETATM 29 C C2 ANP . . . C 2 102.357 91.471 125.553 1 77.68 ? C2 ANP 701 C 1 HETATM 30 N N3 ANP . . . C 2 102.396 91.035 124.292 1 82.55 ? N3 ANP 701 C 1 HETATM 31 C C4 ANP . . . C 2 103.352 91.459 123.447 1 81.82 ? C4 ANP 701 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #