data_8YOD
#
_model_server_result.job_id            BNQYZGzDEhstYti5KgZYgg 
_model_server_result.datetime_utc      '2024-11-05 00:56:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yod 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    8YOD 
#
_exptl.entry_id    8YOD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8YOD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ANP C 1 701 2 ANP ANP . 
F 3 ANP D 1 701 1 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . F 3 150.509 144.468 79.552 1 326.52 ? PG ANP 701 D 1 
HETATM 2 O O1G ANP . . . F 3 151.99 144.282 79.344 1 326.52 ? O1G ANP 701 D 1 
HETATM 3 O O2G ANP . . . F 3 150.005 143.295 80.353 1 326.52 ? O2G ANP 701 D 1 
HETATM 4 O O3G ANP . . . F 3 150.313 145.715 80.375 1 326.52 ? O3G ANP 701 D 1 
HETATM 5 P PB ANP . . . F 3 148.741 143.563 77.364 1 326.52 ? PB ANP 701 D 1 
HETATM 6 O O1B ANP . . . F 3 147.797 144.234 76.406 1 326.52 ? O1B ANP 701 D 1 
HETATM 7 O O2B ANP . . . F 3 148.209 142.471 78.249 1 326.52 ? O2B ANP 701 D 1 
HETATM 8 N N3B ANP . . . F 3 149.732 144.624 78.121 1 326.52 ? N3B ANP 701 D 1 
HETATM 9 P PA ANP . . . F 3 151.162 142.132 76.771 1 326.52 ? PA ANP 701 D 1 
HETATM 10 O O1A ANP . . . F 3 151.057 141.459 78.098 1 326.52 ? O1A ANP 701 D 1 
HETATM 11 O O2A ANP . . . F 3 152.213 143.172 76.572 1 326.52 ? O2A ANP 701 D 1 
HETATM 12 O O3A ANP . . . F 3 149.761 142.805 76.408 1 326.52 ? O3A ANP 701 D 1 
HETATM 13 O O5' ANP . . . F 3 151.268 141.022 75.62 1 326.52 ? O5' ANP 701 D 1 
HETATM 14 C C5' ANP . . . F 3 150.537 139.784 75.799 1 326.52 ? C5' ANP 701 D 1 
HETATM 15 C C4' ANP . . . F 3 149.173 139.905 75.163 1 326.52 ? C4' ANP 701 D 1 
HETATM 16 O O4' ANP . . . F 3 148.962 138.789 74.262 1 326.52 ? O4' ANP 701 D 1 
HETATM 17 C C3' ANP . . . F 3 147.979 139.917 76.129 1 326.52 ? C3' ANP 701 D 1 
HETATM 18 O O3' ANP . . . F 3 147.255 141.135 76.01 1 326.52 ? O3' ANP 701 D 1 
HETATM 19 C C2' ANP . . . F 3 147.1 138.732 75.711 1 326.52 ? C2' ANP 701 D 1 
HETATM 20 O O2' ANP . . . F 3 145.921 139.133 75.047 1 326.52 ? O2' ANP 701 D 1 
HETATM 21 C C1' ANP . . . F 3 147.998 137.908 74.788 1 326.52 ? C1' ANP 701 D 1 
HETATM 22 N N9 ANP . . . F 3 148.705 136.785 75.413 1 326.52 ? N9 ANP 701 D 1 
HETATM 23 C C8 ANP . . . F 3 150.019 136.442 75.227 1 326.52 ? C8 ANP 701 D 1 
HETATM 24 N N7 ANP . . . F 3 150.367 135.38 75.913 1 326.52 ? N7 ANP 701 D 1 
HETATM 25 C C5 ANP . . . F 3 149.209 134.994 76.574 1 326.52 ? C5 ANP 701 D 1 
HETATM 26 C C6 ANP . . . F 3 148.928 133.933 77.454 1 326.52 ? C6 ANP 701 D 1 
HETATM 27 N N6 ANP . . . F 3 149.828 133.032 77.836 1 326.52 ? N6 ANP 701 D 1 
HETATM 28 N N1 ANP . . . F 3 147.666 133.841 77.935 1 326.52 ? N1 ANP 701 D 1 
HETATM 29 C C2 ANP . . . F 3 146.766 134.754 77.548 1 326.52 ? C2 ANP 701 D 1 
HETATM 30 N N3 ANP . . . F 3 146.915 135.788 76.726 1 326.52 ? N3 ANP 701 D 1 
HETATM 31 C C4 ANP . . . F 3 148.176 135.854 76.269 1 326.52 ? C4 ANP 701 D 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#