data_8YOX # _model_server_result.job_id yfBaxToHlmbsMRVMr8kNsA _model_server_result.datetime_utc '2025-02-05 12:58:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8YOX # _exptl.entry_id 8YOX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 801.549 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8YOX _cell.length_a 60.36 _cell.length_b 60.36 _cell.length_c 194.38 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YOX _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O16 P2' _chem_comp.formula_weight 801.549 _chem_comp.id 6FA _chem_comp.mon_nstd_flag . _chem_comp.name '6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 6FA sing 1 n n N1 C10 6FA doub 2 n n C2 O2 6FA doub 3 n n C2 N3 6FA sing 4 n n N3 C4 6FA sing 5 n n N3 HN3 6FA sing 6 n n C4 O4 6FA doub 7 n n C4 C4A 6FA sing 8 n n C4A N5 6FA doub 9 n n C4A C10 6FA sing 10 n n N5 C5A 6FA sing 11 n n C5A C6 6FA doub 12 n y C5A C9A 6FA sing 13 n y C6 O6 6FA sing 14 n n C6 C7 6FA sing 15 n y O6 HO6 6FA sing 16 n n C7 C7M 6FA sing 17 n n C7 C8 6FA doub 18 n y C7M HM71 6FA sing 19 n n C7M HM72 6FA sing 20 n n C7M HM73 6FA sing 21 n n C8 C8M 6FA sing 22 n n C8 C9 6FA sing 23 n y C8M HM81 6FA sing 24 n n C8M HM82 6FA sing 25 n n C8M HM83 6FA sing 26 n n C9 C9A 6FA doub 27 n y C9 H9 6FA sing 28 n n C9A N10 6FA sing 29 n n N10 C10 6FA sing 30 n n N10 C1' 6FA sing 31 n n C1' C2' 6FA sing 32 n n C1' "H1'1" 6FA sing 33 n n C1' "H1'2" 6FA sing 34 n n C2' O2' 6FA sing 35 n n C2' C3' 6FA sing 36 n n C2' H2' 6FA sing 37 n n O2' HO2' 6FA sing 38 n n C3' O3' 6FA sing 39 n n C3' C4' 6FA sing 40 n n C3' H3' 6FA sing 41 n n O3' HO3' 6FA sing 42 n n C4' O4' 6FA sing 43 n n C4' C5' 6FA sing 44 n n C4' H4' 6FA sing 45 n n O4' HO4' 6FA sing 46 n n C5' O5' 6FA sing 47 n n C5' "H5'1" 6FA sing 48 n n C5' "H5'2" 6FA sing 49 n n O5' P 6FA sing 50 n n P O1P 6FA doub 51 n n P O2P 6FA sing 52 n n P O3P 6FA sing 53 n n O2P HOP2 6FA sing 54 n n O3P PA 6FA sing 55 n n PA O1A 6FA doub 56 n n PA O2A 6FA sing 57 n n PA O5B 6FA sing 58 n n O2A HOA2 6FA sing 59 n n O5B C5B 6FA sing 60 n n C5B C4B 6FA sing 61 n n C5B H51A 6FA sing 62 n n C5B H52A 6FA sing 63 n n C4B O4B 6FA sing 64 n n C4B C3B 6FA sing 65 n n C4B H4B 6FA sing 66 n n O4B C1B 6FA sing 67 n n C3B O3B 6FA sing 68 n n C3B C2B 6FA sing 69 n n C3B H3B 6FA sing 70 n n O3B HO3A 6FA sing 71 n n C2B O2B 6FA sing 72 n n C2B C1B 6FA sing 73 n n C2B H2B 6FA sing 74 n n O2B HO2A 6FA sing 75 n n C1B N9A 6FA sing 76 n n C1B H1B 6FA sing 77 n n N9A C8A 6FA sing 78 n y N9A C4X 6FA sing 79 n y C8A N7A 6FA doub 80 n y C8A H8A 6FA sing 81 n n N7A C5X 6FA sing 82 n y C5X C6A 6FA sing 83 n y C5X C4X 6FA doub 84 n y C6A N6A 6FA sing 85 n n C6A N1A 6FA doub 86 n y N6A H61A 6FA sing 87 n n N6A H62A 6FA sing 88 n n N1A C2A 6FA sing 89 n y C2A N3A 6FA doub 90 n y C2A H2A 6FA sing 91 n n N3A C4X 6FA sing 92 n y # _atom_sites.entry_id 8YOX _atom_sites.fract_transf_matrix[1][1] 0.016567 _atom_sites.fract_transf_matrix[1][2] 0.009565 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01913 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005145 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6FA A 1 401 401 6FA 6FA . C 3 SO4 A 1 402 1 SO4 SO4 . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 16 HOH HOH . D 4 HOH A 3 503 13 HOH HOH . D 4 HOH A 4 504 11 HOH HOH . D 4 HOH A 5 505 30 HOH HOH . D 4 HOH A 6 506 5 HOH HOH . D 4 HOH A 7 507 3 HOH HOH . D 4 HOH A 8 508 7 HOH HOH . D 4 HOH A 9 509 19 HOH HOH . D 4 HOH A 10 510 2 HOH HOH . D 4 HOH A 11 511 21 HOH HOH . D 4 HOH A 12 512 29 HOH HOH . D 4 HOH A 13 513 4 HOH HOH . D 4 HOH A 14 514 15 HOH HOH . D 4 HOH A 15 515 33 HOH HOH . D 4 HOH A 16 516 18 HOH HOH . D 4 HOH A 17 517 12 HOH HOH . D 4 HOH A 18 518 8 HOH HOH . D 4 HOH A 19 519 6 HOH HOH . D 4 HOH A 20 520 9 HOH HOH . D 4 HOH A 21 521 32 HOH HOH . D 4 HOH A 22 522 34 HOH HOH . D 4 HOH A 23 523 25 HOH HOH . D 4 HOH A 24 524 22 HOH HOH . D 4 HOH A 25 525 10 HOH HOH . D 4 HOH A 26 526 23 HOH HOH . D 4 HOH A 27 527 24 HOH HOH . D 4 HOH A 28 528 20 HOH HOH . D 4 HOH A 29 529 27 HOH HOH . D 4 HOH A 30 530 14 HOH HOH . D 4 HOH A 31 531 17 HOH HOH . D 4 HOH A 32 532 26 HOH HOH . D 4 HOH A 33 533 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 6FA . . . B 2 16.339 14.68 20.968 1 52.23 ? N1 6FA 401 A 1 HETATM 2 C C2 6FA . . . B 2 15.418 15.671 20.953 1 52.2 ? C2 6FA 401 A 1 HETATM 3 O O2 6FA . . . B 2 15.401 16.535 21.84 1 53.07 ? O2 6FA 401 A 1 HETATM 4 N N3 6FA . . . B 2 14.471 15.752 19.98 1 48.85 ? N3 6FA 401 A 1 HETATM 5 C C4 6FA . . . B 2 14.413 14.856 18.946 1 48.91 ? C4 6FA 401 A 1 HETATM 6 O O4 6FA . . . B 2 13.542 14.963 18.097 1 47.65 ? O4 6FA 401 A 1 HETATM 7 C C4A 6FA . . . B 2 15.349 13.816 18.928 1 50.64 ? C4A 6FA 401 A 1 HETATM 8 N N5 6FA . . . B 2 15.297 12.95 17.954 1 51.71 ? N5 6FA 401 A 1 HETATM 9 C C5A 6FA . . . B 2 16.187 11.943 17.953 1 51.11 ? C5A 6FA 401 A 1 HETATM 10 C C6 6FA . . . B 2 16.12 10.989 16.894 1 53.78 ? C6 6FA 401 A 1 HETATM 11 O O6 6FA . . . B 2 15.162 11.161 15.948 1 58.85 ? O6 6FA 401 A 1 HETATM 12 C C7 6FA . . . B 2 17.007 9.932 16.867 1 50.37 ? C7 6FA 401 A 1 HETATM 13 C C7M 6FA . . . B 2 16.948 8.916 15.758 1 52.84 ? C7M 6FA 401 A 1 HETATM 14 C C8 6FA . . . B 2 17.972 9.795 17.878 1 53.3 ? C8 6FA 401 A 1 HETATM 15 C C8M 6FA . . . B 2 18.941 8.644 17.847 1 50.33 ? C8M 6FA 401 A 1 HETATM 16 C C9 6FA . . . B 2 18.06 10.727 18.89 1 54.51 ? C9 6FA 401 A 1 HETATM 17 C C9A 6FA . . . B 2 17.169 11.808 18.951 1 52.27 ? C9A 6FA 401 A 1 HETATM 18 N N10 6FA . . . B 2 17.226 12.752 19.967 1 52.88 ? N10 6FA 401 A 1 HETATM 19 C C10 6FA . . . B 2 16.309 13.791 19.999 1 52.6 ? C10 6FA 401 A 1 HETATM 20 C C1' 6FA . . . B 2 18.233 12.601 21.032 1 48.77 ? C1' 6FA 401 A 1 HETATM 21 C C2' 6FA . . . B 2 19.445 13.469 20.826 1 49.26 ? C2' 6FA 401 A 1 HETATM 22 O O2' 6FA . . . B 2 20.035 13.146 19.583 1 52.01 ? O2' 6FA 401 A 1 HETATM 23 C C3' 6FA . . . B 2 20.455 13.237 21.95 1 51.84 ? C3' 6FA 401 A 1 HETATM 24 O O3' 6FA . . . B 2 19.779 13.009 23.184 1 51.86 ? O3' 6FA 401 A 1 HETATM 25 C C4' 6FA . . . B 2 21.372 14.441 22.138 1 51.29 ? C4' 6FA 401 A 1 HETATM 26 O O4' 6FA . . . B 2 22.246 14.537 21.012 1 49.53 ? O4' 6FA 401 A 1 HETATM 27 C C5' 6FA . . . B 2 22.16 14.362 23.426 1 47.59 ? C5' 6FA 401 A 1 HETATM 28 O O5' 6FA . . . B 2 22.843 15.626 23.652 1 43.71 ? O5' 6FA 401 A 1 HETATM 29 P P 6FA . . . B 2 24.203 15.616 24.485 1 42.64 ? P 6FA 401 A 1 HETATM 30 O O1P 6FA . . . B 2 24.825 16.975 24.448 1 46.47 -1 O1P 6FA 401 A 1 HETATM 31 O O2P 6FA . . . B 2 23.937 14.962 25.807 1 54.9 ? O2P 6FA 401 A 1 HETATM 32 O O3P 6FA . . . B 2 25.111 14.629 23.62 1 49.57 ? O3P 6FA 401 A 1 HETATM 33 P PA 6FA . . . B 2 25.711 14.712 22.135 1 42.22 ? PA 6FA 401 A 1 HETATM 34 O O1A 6FA . . . B 2 26.057 13.319 21.722 1 53.89 -1 O1A 6FA 401 A 1 HETATM 35 O O2A 6FA . . . B 2 24.784 15.547 21.325 1 43.57 ? O2A 6FA 401 A 1 HETATM 36 O O5B 6FA . . . B 2 27.082 15.495 22.341 1 43.22 ? O5B 6FA 401 A 1 HETATM 37 C C5B 6FA . . . B 2 28.153 14.793 22.991 1 42.38 ? C5B 6FA 401 A 1 HETATM 38 C C4B 6FA . . . B 2 29.452 15.348 22.475 1 43.93 ? C4B 6FA 401 A 1 HETATM 39 O O4B 6FA . . . B 2 30.517 14.927 23.359 1 44.29 ? O4B 6FA 401 A 1 HETATM 40 C C3B 6FA . . . B 2 29.882 14.885 21.072 1 44.06 ? C3B 6FA 401 A 1 HETATM 41 O O3B 6FA . . . B 2 30.315 15.993 20.301 1 43.51 ? O3B 6FA 401 A 1 HETATM 42 C C2B 6FA . . . B 2 31.123 14.03 21.352 1 52.35 ? C2B 6FA 401 A 1 HETATM 43 O O2B 6FA . . . B 2 32.02 13.939 20.263 1 52.36 ? O2B 6FA 401 A 1 HETATM 44 C C1B 6FA . . . B 2 31.675 14.721 22.596 1 47.58 ? C1B 6FA 401 A 1 HETATM 45 N N9A 6FA . . . B 2 32.549 13.866 23.386 1 51.48 ? N9A 6FA 401 A 1 HETATM 46 C C8A 6FA . . . B 2 32.138 12.76 24.083 1 49.18 ? C8A 6FA 401 A 1 HETATM 47 N N7A 6FA . . . B 2 33.115 12.145 24.694 1 54.2 ? N7A 6FA 401 A 1 HETATM 48 C C5X 6FA . . . B 2 34.238 12.905 24.404 1 52.04 ? C5X 6FA 401 A 1 HETATM 49 C C6A 6FA . . . B 2 35.585 12.771 24.785 1 55.46 ? C6A 6FA 401 A 1 HETATM 50 N N6A 6FA . . . B 2 36.032 11.788 25.56 1 57.36 ? N6A 6FA 401 A 1 HETATM 51 N N1A 6FA . . . B 2 36.458 13.7 24.329 1 57.59 ? N1A 6FA 401 A 1 HETATM 52 C C2A 6FA . . . B 2 35.988 14.682 23.548 1 55.71 ? C2A 6FA 401 A 1 HETATM 53 N N3A 6FA . . . B 2 34.746 14.908 23.123 1 53.12 ? N3A 6FA 401 A 1 HETATM 54 C C4X 6FA . . . B 2 33.904 13.975 23.598 1 50.43 ? C4X 6FA 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 54 #